Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

24409494 .. 24410108

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00236940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTAAAAGGAAGGTGAGATTGCACCACATTACCAATGAGACTTCCCGACGAATGACATTTAGAAAAAGAAAGAAAGGCCTTCTGAAGAAGGTGGGTGAGATAACCACTCTCTGTGACATCAAGGCCACGATGATCATCTACAGCCCCTTTGACACGGAGCCGGAGGTGTTCCTAAGTCATCTAGAAGTCCACGATCTAGTAACGAAGTTCCGAGATATGCCGCAGATGGACAAGACAAGAAAGATGATCACCCAGGAGACCTTCTTACGACAGCGAATTGACAAAGTCCGGGACCTTATCAGAAAGCAAAGAAGAGACAACCGAGAAAAGGAGATCACTCAAGTTCTGAAGAAGGTGGATGAGATAACCACTCTCTGTGACATCAAGGCCGCGGCGATCATCTACAACCCCTTTGACTCAGAGCCGGAGGTGTTCCCAAGTCATCCGAAAGTCCACGAACTACTAACGAAGTTCCGAGATATGCCGCAGATGGACAAGACAAGAAAGATGGTTGACCAGAAGACATTCTCTGACAACGAATCGACAAAATCCTGGAGCAGATCAAAAACCAAAGAAGAGACAACCGAGAAAATGAGATCACTCAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

204

Amino Acids

24.39

Weight (kDa)

9.86

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 50	1.2e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	395
AciI	CCGC	4 cut(s)	224, 393, 395, 488
AcuI	CTGAAG	2 cut(s)	107, 371
AfiI	CCNNNNNNNGG	1 cut(s)	331
AjnI	CCWGG	2 cut(s)	255, 554
Alw26I	GTCTC	4 cut(s)	35, 254, 312, 575
AoxI	GGCC	3 cut(s)	79, 126, 390
Asp700I	GAANNNNTTC	1 cut(s)	527
AspS9I	GGNCC	1 cut(s)	295
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	3 cut(s)	28, 110, 244
AvaII	GGWCC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	530
BccI	CCATC	3 cut(s)	223, 487, 505
BciT130I	CCWGG	2 cut(s)	257, 556
BclI	TGATCA	2 cut(s)	135, 249
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	4 cut(s)	35, 254, 312, 575
BfaI	CTAG	2 cut(s)	185, 200
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	4 cut(s)	224, 393, 396, 488
BlsI	GCNGC	4 cut(s)	225, 394, 397, 489
Bme1390I	CCNGG	3 cut(s)	257, 293, 556
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	162, 296
BmrFI	CCNGG	3 cut(s)	257, 293, 556
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	577
BpuEI	CTTGAG	2 cut(s)	327, 590
BpuMI	CCSGG	1 cut(s)	293
BsaBI	GATNNNNATC	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	255, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse8I	GATNNNNATC	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	257, 556
BseDI	CCNNGG	2 cut(s)	255, 393
BseGI	GGATG	2 cut(s)	367, 445
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	3 cut(s)	81, 128, 392
BsiSI	CCGG	3 cut(s)	164, 292, 428
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	4 cut(s)	35, 254, 312, 575
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	3 cut(s)	81, 128, 392
Bso31I	GGTCTC	1 cut(s)	254
Bsp143I	GATC	7 cut(s)	135, 196, 249, 336, 399, 563, 599
BspACI	CCGC	4 cut(s)	224, 393, 395, 488
BspANI	GGCC	3 cut(s)	81, 128, 392
BspCNI	CTCAG	1 cut(s)	434
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	162, 296
BspTNI	GGTCTC	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	255, 393
BssMI	GATC	7 cut(s)	135, 196, 249, 336, 399, 563, 599
Bst2UI	CCWGG	2 cut(s)	257, 556
Bst6I	CTCTTC	2 cut(s)	310, 573
BstDEI	CTNAG	2 cut(s)	176, 421
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	2 cut(s)	367, 445
BstFNI	CGCG	1 cut(s)	395
BstKTI	GATC	7 cut(s)	138, 199, 252, 339, 402, 566, 602
BstMAI	GTCTC	4 cut(s)	35, 254, 312, 575
BstMBI	GATC	7 cut(s)	135, 196, 249, 336, 399, 563, 599
BstNI	CCWGG	2 cut(s)	257, 556
BstSCI	CCNGG	3 cut(s)	255, 291, 554
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	395
BstV2I	GAAGAC	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	81, 128, 392
BtgI	CCRYGG	1 cut(s)	393
BtsCI	GGATG	2 cut(s)	367, 445
Cfr13I	GGNCC	1 cut(s)	295
Cfr42I	CCGCGG	1 cut(s)	396
CviJI	RGCY	7 cut(s)	5, 81, 128, 147, 163, 392, 427
CviKI_1	RGCY	7 cut(s)	5, 81, 128, 147, 163, 392, 427
DdeI	CTNAG	2 cut(s)	176, 421
DpnI	GATC	7 cut(s)	137, 198, 251, 338, 401, 565, 601
DpnII	GATC	7 cut(s)	135, 196, 249, 336, 399, 563, 599
Eam1104I	CTCTTC	2 cut(s)	310, 573
EarI	CTCTTC	2 cut(s)	310, 573
Eco147I	AGGCCT	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	295
Eco57I	CTGAAG	2 cut(s)	107, 371
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRII	CCWGG	2 cut(s)	255, 554
FaiI	YATR	2 cut(s)	221, 485
FaqI	GGGAC	1 cut(s)	308
FbaI	TGATCA	2 cut(s)	135, 249
Fnu4HI	GCNGC	4 cut(s)	224, 393, 396, 488
FokI	GGATG	2 cut(s)	374, 432
Fsp4HI	GCNGC	4 cut(s)	224, 393, 396, 488
FspBI	CTAG	2 cut(s)	185, 200
GluI	GCNGC	4 cut(s)	224, 393, 396, 488
GsuI	CTGGAG	1 cut(s)	577
HaeIII	GGCC	3 cut(s)	81, 128, 392
HapII	CCGG	3 cut(s)	164, 292, 428
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HinfI	GANTC	2 cut(s)	419, 542
HpaII	CCGG	3 cut(s)	164, 292, 428
HphI	GGTGA	3 cut(s)	28, 110, 244
Hpy166II	GTNNAC	3 cut(s)	193, 457, 517
Hpy188I	TCNGA	9 cut(s)	87, 215, 305, 351, 424, 450, 479, 535, 614
Hpy188III	TCNNGA	2 cut(s)	48, 185
Hpy8I	GTNNAC	3 cut(s)	193, 457, 517
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	5 cut(s)	7, 85, 92, 274, 349
HpyCH4V	TGCA	1 cut(s)	25
HpyF3I	CTNAG	2 cut(s)	176, 421
Ksp22I	TGATCA	2 cut(s)	135, 249
KspI	CCGCGG	1 cut(s)	396
Kzo9I	GATC	7 cut(s)	135, 196, 249, 336, 399, 563, 599
LmnI	GCTCC	2 cut(s)	160, 558
LpnPI	CCDG	8 cut(s)	177, 242, 269, 305, 441, 533, 541, 568
MaeI	CTAG	2 cut(s)	185, 200
MaeIII	GTNAC	3 cut(s)	116, 202, 380
MalI	GATC	7 cut(s)	137, 198, 251, 338, 401, 565, 601
MboI	GATC	7 cut(s)	135, 196, 249, 336, 399, 563, 599
MboII	GAAGA	5 cut(s)	100, 327, 364, 535, 590
MluCI	AATT	1 cut(s)	279
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	2 cut(s)	160, 424
MroXI	GAANNNNTTC	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	3 cut(s)	164, 292, 428
MspR9I	CCNGG	3 cut(s)	257, 293, 556
MvaI	CCWGG	2 cut(s)	257, 556
MvnI	CGCG	1 cut(s)	395
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	7 cut(s)	135, 196, 249, 336, 399, 563, 599
NlaIV	GGNNCC	2 cut(s)	162, 296
NmuCI	GTSAC	2 cut(s)	116, 380
PceI	AGGCCT	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	1 cut(s)	542
PflFI	GACNNNGTC	1 cut(s)	287
PfoI	TCCNGGA	2 cut(s)	291, 554
PkrI	GCNGC	4 cut(s)	225, 394, 397, 489
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PpuMI	RGGWCCY	1 cut(s)	295
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	2 cut(s)	255, 554
PspGI	CCWGG	2 cut(s)	255, 554
PspN4I	GGNNCC	2 cut(s)	162, 296
PspPI	GGNCC	1 cut(s)	295
PspPPI	RGGWCCY	1 cut(s)	295
PsyI	GACNNNGTC	1 cut(s)	287
SacII	CCGCGG	1 cut(s)	396
SatI	GCNGC	4 cut(s)	224, 393, 396, 488
Sau3AI	GATC	7 cut(s)	135, 196, 249, 336, 399, 563, 599
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	3 cut(s)	257, 293, 556
SetI	ASST	7 cut(s)	18, 96, 171, 266, 300, 360, 435
SfcI	CTRYAG	1 cut(s)	142
Sfr303I	CCGCGG	1 cut(s)	396
SgrBI	CCGCGG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	295
SmlI	CTYRAG	2 cut(s)	342, 605
SmoI	CTYRAG	2 cut(s)	342, 605
Sse9I	AATT	1 cut(s)	279
SseBI	AGGCCT	1 cut(s)	81
SsiI	CCGC	4 cut(s)	224, 393, 395, 488
SspMI	CTAG	2 cut(s)	185, 200
StuI	AGGCCT	1 cut(s)	81
StyD4I	CCNGG	3 cut(s)	255, 291, 554
TaqI	TCGA	1 cut(s)	545
TasI	AATT	1 cut(s)	279
TauI	GCSGC	4 cut(s)	226, 395, 398, 490
TfiI	GAWTC	1 cut(s)	542
TseFI	GTSAC	2 cut(s)	116, 380
Tsp45I	GTSAC	2 cut(s)	116, 380
TspGWI	ACGGA	1 cut(s)	173
Tth111I	GACNNNGTC	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	295
XbaI	TCTAGA	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	2 cut(s)	185, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.