Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008767.1

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

41020 .. 42408

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008767.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgaagacaatttctagggaggaggcggcagagccggaggaagagctcggcgtcatagagaagagggaatgtggcgcagaggaatgggatcttggaaaaaggaaggagggccttctgaagaaggtgtacgagatcaccactctatgtgacatcaaggctgcggcgatcatctacagtccctttgacttcgagctggaggtcttcccaagtcatttcgaagtccacgaaatgttgatgaggttccaagatatgtcggagaaggacaagacaaaaaacatggtcaaccaggaggcctttttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

100

Amino Acids

11.69

Weight (kDa)

4.73

Isoelectric Point (pI)

57.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	26, 161
AclWI	GGATC	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	285
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	2 cut(s)	46, 193
AluI	AGCT	2 cut(s)	46, 193
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	96
AoxI	GGCC	2 cut(s)	109, 291
ApeKI	GCWGC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	127
AsuII	TTCGAA	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	48
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
BbsI	GAAGAC	2 cut(s)	11, 193
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	287
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	172
BisI	GCNGC	3 cut(s)	27, 159, 162
BlsI	GCNGC	3 cut(s)	28, 160, 163
Bme1390I	CCNGG	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	287
BpiI	GAAGAC	2 cut(s)	11, 193
BpmI	CTGGAG	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	2 cut(s)	111, 293
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	111, 293
Bsp119I	TTCGAA	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	88, 132, 165
BspACI	CCGC	2 cut(s)	26, 161
BspANI	GGCC	2 cut(s)	111, 293
BspLI	GGNNCC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	96
BspQI	GCTCTTC	1 cut(s)	36
BspT104I	TTCGAA	1 cut(s)	216
BssMI	GATC	3 cut(s)	88, 132, 165
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	2 cut(s)	36, 56
BstACI	GRCGYC	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	3 cut(s)	91, 135, 168
BstMBI	GATC	3 cut(s)	88, 132, 165
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	145
BstV2I	GAAGAC	2 cut(s)	11, 193
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	111, 293
CfoI	GCGC	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	109
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	6 cut(s)	34, 46, 111, 158, 193, 293
CviKI_1	RGCY	6 cut(s)	34, 46, 111, 158, 193, 293
CviQI	GTAC	1 cut(s)	127
DpnI	GATC	3 cut(s)	90, 134, 167
DpnII	GATC	3 cut(s)	88, 132, 165
Eam1104I	CTCTTC	2 cut(s)	36, 56
EarI	CTCTTC	2 cut(s)	36, 56
Ecl136II	GAGCTC	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	1 cut(s)	280
FaiI	YATR	5 cut(s)	56, 145, 251, 278, 301
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	1 cut(s)	276
Fnu4HI	GCNGC	3 cut(s)	27, 159, 162
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	3 cut(s)	27, 159, 162
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	3 cut(s)	27, 159, 162
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	111, 293
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	3 cut(s)	127, 223, 283
Hpy188I	TCNGA	2 cut(s)	117, 256
Hpy8I	GTNNAC	3 cut(s)	127, 223, 283
HpyAV	CCTTC	4 cut(s)	97, 115, 122, 253
HpyCH4III	ACNGT	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	1 cut(s)	75
Kzo9I	GATC	3 cut(s)	88, 132, 165
LguI	GCTCTTC	1 cut(s)	36
LpnPI	CCDG	4 cut(s)	48, 179, 272, 299
Lsp1109I	GCAGC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	3 cut(s)	90, 134, 167
MboI	GATC	3 cut(s)	88, 132, 165
MboII	GAAGA	5 cut(s)	16, 53, 73, 130, 193
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	9
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	9 cut(s)	13, 16, 31, 57, 73, 100, 190, 231, 283
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
NdeII	GATC	3 cut(s)	88, 132, 165
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	1 cut(s)	242
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	146
NspV	TTCGAA	1 cut(s)	216
PceI	AGGCCT	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	28, 160, 163
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SacI	GAGCTC	1 cut(s)	48
SapI	GCTCTTC	1 cut(s)	36
SatI	GCNGC	3 cut(s)	27, 159, 162
Sau3AI	GATC	3 cut(s)	88, 132, 165
Sau96I	GGNCC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	5 cut(s)	48, 126, 195, 201, 242
SfcI	CTRYAG	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	216
Sse9I	AATT	1 cut(s)	9
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	2 cut(s)	26, 161
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	189, 216
TasI	AATT	1 cut(s)	9
TauI	GCSGC	2 cut(s)	29, 164
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	17
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.