Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

43943621 .. 43944412

Gene Structure 792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19914

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTAGAAGGAAGGTGAGACTGCACTATATTGCCAATGAGAGTTCCCGACGAACGACATTTAGAAAAAGAAAGAAGGGTCTTCTGAAGAAGGTGGGAGAGATAACCACTCTCTATGACATCAAGGCCGCGGTGATCATCTACAGTCCCTTTGATGGAGAGCCGAAGGTGTTCCCAAGTCATCCAGAAGTCCACGAAGTGCTGACGAAGTTTCGAGATATGTCGCAGATGGACAAGACAAGAAAGATGGTCGACCAGGAGACATTCTTACGACAGCGAATCGACAAAGTCCGGGAGCAGATCAGAAAGTTGAAAAGAGACAACCGAGAAAAGGAGATCACTCAAGTCATGTTCGGTTGTTTGAAGGGGAGAACACTCTCTGACCTAGAAATGAAGGATCTGCAAGACCTCAATTTTATCATCGAACGCAACCTCAGGGAGCTTGAAATCAAACAGCGGGATGTCGATGAGCAGAATGCTGATGAGCAAAAGCAGGAGGAAAACCAGGAGAACCAGCTCAACCAAGTGCAAGCTGAATCGATTGTGGTGGAGCTCGGTCTGACGACGAGGAATGCATTTGGGGAGGGAACCAACAGAGGTGTGCAGCAACAACACCACCAAGCCGCGATGGAGTCGCAAAGCATGGAGCAGTGGCAGTACCAAATGATGCAGGTTACAGCTCAGAGGCAGCAACATCAGCAGTTGTTCCAGCAGCAACCATGGTTCGTGGACATCATGAATCCACCATCGCCCCAAACGAGGGACTTCTTGCACCCACTACCACCGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

263

Amino Acids

31.26

Weight (kDa)

9.08

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 56	4.1e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	661
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	2 cut(s)	131, 626
AciI	CCGC	5 cut(s)	129, 131, 457, 624, 785
AclWI	GGATC	1 cut(s)	405
AcuI	CTGAAG	1 cut(s)	107
AdeI	CACNNNGTG	1 cut(s)	199
AfaI	GTAC	1 cut(s)	659
AfiI	CCNNNNNNNGG	4 cut(s)	155, 331, 759, 760
AgsI	TTSAA	3 cut(s)	313, 364, 446
AjnI	CCWGG	2 cut(s)	255, 504
AluBI	AGCT	5 cut(s)	442, 517, 533, 553, 680
AluI	AGCT	5 cut(s)	442, 517, 533, 553, 680
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	3 cut(s)	13, 254, 312
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	3 cut(s)	604, 688, 712
Asp700I	GAANNNNTTC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	28, 145
AxyI	CCTNAGG	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	3 cut(s)	616, 700, 724
BccI	CCATC	5 cut(s)	149, 223, 241, 622, 754
BciT130I	CCWGG	2 cut(s)	257, 506
BclI	TGATCA	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	3 cut(s)	13, 254, 312
BfaI	CTAG	2 cut(s)	6, 386
BfmI	CTRYAG	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	661
BisI	GCNGC	5 cut(s)	129, 605, 624, 689, 713
BlsI	GCNGC	5 cut(s)	130, 606, 625, 690, 714
Bme1390I	CCNGG	3 cut(s)	257, 293, 506
BmiI	GGNNCC	1 cut(s)	589
BmrFI	CCNGG	3 cut(s)	257, 293, 506
BmsI	GCATC	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	293
Bsa29I	ATCGAT	1 cut(s)	539
BsaJI	CCNNGG	2 cut(s)	129, 719
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 331, 759, 760
Bse21I	CCTNAGG	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	257, 506
BseCI	ATCGAT	1 cut(s)	539
BseDI	CCNNGG	2 cut(s)	129, 719
BseGI	GGATG	2 cut(s)	181, 466
BseLI	CCNNNNNNNGG	4 cut(s)	155, 331, 759, 760
BseMII	CTCAG	2 cut(s)	448, 695
BseXI	GCAGC	3 cut(s)	616, 700, 724
BsgI	GTGCAG	2 cut(s)	8, 623
Bsh1236I	CGCG	2 cut(s)	131, 626
BshFI	GGCC	1 cut(s)	128
BshVI	ATCGAT	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	292
BslFI	GGGAC	2 cut(s)	132, 776
BslI	CCNNNNNNNGG	4 cut(s)	155, 331, 759, 760
BsmAI	GTCTC	3 cut(s)	13, 254, 312
BsmFI	GGGAC	2 cut(s)	132, 776
BsmI	GAATGC	2 cut(s)	481, 577
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	4 cut(s)	135, 300, 336, 397
Bsp19I	CCATGG	1 cut(s)	719
BspACI	CCGC	5 cut(s)	129, 131, 457, 624, 785
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	2 cut(s)	447, 694
BspDI	ATCGAT	1 cut(s)	539
BspFNI	CGCG	2 cut(s)	131, 626
BspHI	TCATGA	1 cut(s)	735
BspLI	GGNNCC	1 cut(s)	589
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	129, 719
BssMI	GATC	4 cut(s)	135, 300, 336, 397
BssT1I	CCWWGG	1 cut(s)	719
Bst2UI	CCWGG	2 cut(s)	257, 506
Bst4CI	ACNGT	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	2 cut(s)	434, 681
BstDSI	CCRYGG	2 cut(s)	129, 719
BstF5I	GGATG	2 cut(s)	181, 466
BstFNI	CGCG	2 cut(s)	131, 626
BstKTI	GATC	4 cut(s)	138, 303, 339, 400
BstMAI	GTCTC	3 cut(s)	13, 254, 312
BstMBI	GATC	4 cut(s)	135, 300, 336, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	697
BstNI	CCWGG	2 cut(s)	257, 506
BstSCI	CCNGG	3 cut(s)	255, 291, 504
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	2 cut(s)	131, 626
BstV1I	GCAGC	3 cut(s)	616, 700, 724
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
Bsu15I	ATCGAT	1 cut(s)	539
Bsu36I	CCTNAGG	1 cut(s)	434
BsuRI	GGCC	1 cut(s)	128
BsuTUI	ATCGAT	1 cut(s)	539
BtgI	CCRYGG	2 cut(s)	129, 719
BtgZI	GCGATG	2 cut(s)	641, 732
BtsCI	GGATG	2 cut(s)	181, 466
BtsI	GCAGTG	1 cut(s)	656
BtsIMutI	CAGTG	1 cut(s)	656
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	1 cut(s)	531
CciI	TCATGA	1 cut(s)	735
Cfr42I	CCGCGG	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	539
Csp6I	GTAC	1 cut(s)	658
CviAII	CATG	4 cut(s)	349, 643, 720, 736
CviJI	RGCY	9 cut(s)	5, 128, 163, 442, 517, 533, 553, 623, 680
CviKI_1	RGCY	9 cut(s)	5, 128, 163, 442, 517, 533, 553, 623, 680
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	2 cut(s)	434, 681
DpnI	GATC	4 cut(s)	137, 302, 338, 399
DpnII	GATC	4 cut(s)	135, 300, 336, 397
DraIII	CACNNNGTG	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	719
Eco24I	GRGCYC	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	107
Eco81I	CCTNAGG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	553
EcoRII	CCWGG	2 cut(s)	255, 504
EcoT14I	CCWWGG	1 cut(s)	719
EcoT22I	ATGCAT	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	719
FaeI	CATG	4 cut(s)	352, 646, 723, 739
FaiI	YATR	7 cut(s)	30, 117, 221, 350, 644, 721, 737
FaqI	GGGAC	2 cut(s)	132, 776
FatI	CATG	4 cut(s)	348, 642, 719, 735
FauI	CCCGC	1 cut(s)	450
FbaI	TGATCA	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	5 cut(s)	129, 605, 624, 689, 713
FokI	GGATG	2 cut(s)	168, 473
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	5 cut(s)	129, 605, 624, 689, 713
FspBI	CTAG	2 cut(s)	6, 386
GluI	GCNGC	5 cut(s)	129, 605, 624, 689, 713
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	292
Hin1II	CATG	4 cut(s)	352, 646, 723, 739
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	4 cut(s)	279, 536, 632, 739
HpaII	CCGG	1 cut(s)	292
HphI	GGTGA	2 cut(s)	28, 145
Hpy166II	GTNNAC	3 cut(s)	193, 253, 730
Hpy188I	TCNGA	5 cut(s)	87, 305, 382, 561, 684
Hpy188III	TCNNGA	4 cut(s)	48, 185, 215, 736
Hpy8I	GTNNAC	3 cut(s)	193, 253, 730
Hpy99I	CGWCG	2 cut(s)	54, 568
HpyAV	CCTTC	7 cut(s)	3, 7, 70, 85, 160, 358, 388
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	7 cut(s)	25, 403, 529, 575, 604, 670, 772
HpyF10VI	GCNNNNNNNGC	1 cut(s)	697
HpyF3I	CTNAG	2 cut(s)	434, 681
Hsp92II	CATG	4 cut(s)	352, 646, 723, 739
Ksp22I	TGATCA	1 cut(s)	135
KspI	CCGCGG	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	135, 300, 336, 397
LmnI	GCTCC	4 cut(s)	295, 439, 550, 646
Lsp1109I	GCAGC	3 cut(s)	616, 700, 724
LweI	GCATC	1 cut(s)	657
MaeI	CTAG	2 cut(s)	6, 386
MaeIII	GTNAC	1 cut(s)	673
MalI	GATC	4 cut(s)	137, 302, 338, 399
MboI	GATC	4 cut(s)	135, 300, 336, 397
MboII	GAAGA	2 cut(s)	74, 100
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	641
MnlI	CCTC	8 cut(s)	419, 443, 490, 561, 577, 590, 678, 753
Mph1103I	ATGCAT	1 cut(s)	577
MroXI	GAANNNNTTC	1 cut(s)	170
MspA1I	CMGCKG	2 cut(s)	131, 457
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	3 cut(s)	257, 293, 506
Mva1269I	GAATGC	2 cut(s)	481, 577
MvaI	CCWGG	2 cut(s)	257, 506
MvnI	CGCG	2 cut(s)	131, 626
MwoI	GCNNNNNNNGC	1 cut(s)	697
NciI	CCSGG	1 cut(s)	293
NcoI	CCATGG	1 cut(s)	719
NdeII	GATC	4 cut(s)	135, 300, 336, 397
NlaIII	CATG	4 cut(s)	352, 646, 723, 739
NlaIV	GGNNCC	1 cut(s)	589
NsiI	ATGCAT	1 cut(s)	577
PagI	TCATGA	1 cut(s)	735
PcsI	WCGNNNNNNNCGW	1 cut(s)	755
PctI	GAATGC	2 cut(s)	481, 577
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	279, 536, 739
PflFI	GACNNNGTC	1 cut(s)	287
PfoI	TCCNGGA	1 cut(s)	291
PkrI	GCNGC	5 cut(s)	130, 606, 625, 690, 714
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
Psp124BI	GAGCTC	1 cut(s)	555
Psp6I	CCWGG	2 cut(s)	255, 504
PspGI	CCWGG	2 cut(s)	255, 504
PspN4I	GGNNCC	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	397
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
SacI	GAGCTC	1 cut(s)	555
SacII	CCGCGG	1 cut(s)	132
SalI	GTCGAC	1 cut(s)	251
SatI	GCNGC	5 cut(s)	129, 605, 624, 689, 713
Sau3AI	GATC	4 cut(s)	135, 300, 336, 397
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	3 cut(s)	257, 293, 506
SduI	GDGCHC	1 cut(s)	555
SfaNI	GCATC	1 cut(s)	657
SfcI	CTRYAG	1 cut(s)	142
Sfr303I	CCGCGG	1 cut(s)	132
SgrBI	CCGCGG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	412
SsiI	CCGC	5 cut(s)	129, 131, 457, 624, 785
SspMI	CTAG	2 cut(s)	6, 386
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	3 cut(s)	255, 291, 504
StyI	CCWWGG	1 cut(s)	719
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	6 cut(s)	214, 252, 282, 423, 465, 539
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	1 cut(s)	412
TauI	GCSGC	2 cut(s)	131, 626
TfiI	GAWTC	3 cut(s)	279, 536, 739
TscAI	CASTG	1 cut(s)	656
TseI	GCWGC	3 cut(s)	604, 688, 712
TspDTI	ATGAA	2 cut(s)	407, 752
TspRI	CASTG	1 cut(s)	656
Tth111I	GACNNNGTC	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	2 cut(s)	6, 386
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.