Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

1751385 .. 1752407

Gene Structure 1023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGACGAGGAAGAAGCTAAACCTATCTTACATCACCAATGAGTCAATGAGAAAAGCAACATTCAATAAGAGAAAGAAAGGGCTTGTGAAAAAAATCCACGAGCTTTCCGTTCTCTGCGGAATCGAAGCATGTGCAGTGATTTATAGTCCGTTCAACTCAAACCCTGAAGTCTGGCCATCGAATTCAGAAGTTAAAAATGTAATGGAAAATTTTGAGATGTTGACAAAGTTGGAGCAAGAGAAGAAAATGGTGAGCCACGAAGGTTTTATCAGACAAAACATCTCAAAAACTATGGAGAGTAACAACAAAAAGATGATCGATAATGCGGAGAGGACGATGAAAGAAGCCATGTTCCAACTTCTTAGTGGAAAAGGGGAGAAGCTTAATTTGACTGATAGAAACCGTGAAGATTTGTGTAAGTACATTGATCAATATCTTAAAGAACTTTATCACCACAAAAACAAAACCATAAATCAATCACATATTGAACCTGGAGAATCTTCGGGAGCTACAAATGCCATGACACCAACATCTGTTGTTGAACCTATTATCTCTTCAATCCAGCGACCAAATCAGAATCCAAATTTTAATCATCTTAGTCATAATCAATATCAATATCAACAACAGTTTGGATATCCGATTTTGGTTCAAGATGGAATTTACAATCCGAGTCAAATTCAGAATCAACATGAGGAATGGCTGGATGATCATATGATGAATCATTCTAAGGAAATAAGTCATCCTTTGATGGATGATAACAACTTTTACTACCAACAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

260

Amino Acids

30.42

Weight (kDa)

7.18

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 51	8.5e-18	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	117, 326
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	5 cut(s)	181, 208, 583, 657, 675
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	422
AgsI	TTSAA	6 cut(s)	64, 154, 488, 542, 558, 650
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	4 cut(s)	16, 103, 382, 509
AluI	AGCT	4 cut(s)	16, 103, 382, 509
AoxI	GGCC	1 cut(s)	173
ApoI	RAATTY	5 cut(s)	181, 208, 583, 657, 675
AsuHPI	GGTGA	3 cut(s)	25, 262, 443
BalI	TGGCCA	1 cut(s)	175
BauI	CACGAG	1 cut(s)	98
BccI	CCATC	3 cut(s)	184, 647, 742
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	2 cut(s)	427, 706
BfaI	CTAG	1 cut(s)	781
Bme1390I	CCNGG	1 cut(s)	492
BmrFI	CCNGG	1 cut(s)	492
BpmI	CTGGAG	1 cut(s)	513
Bsa29I	ATCGAT	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	492
BseCI	ATCGAT	1 cut(s)	318
BseGI	GGATG	3 cut(s)	709, 739, 757
BseJI	GATNNNNATC	1 cut(s)	432
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	175
BshVI	ATCGAT	1 cut(s)	318
BsnI	GGCC	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	315, 427, 706
BspACI	CCGC	2 cut(s)	117, 326
BspANI	GGCC	1 cut(s)	175
BspDI	ATCGAT	1 cut(s)	318
BssMI	GATC	3 cut(s)	315, 427, 706
BssSI	CACGAG	1 cut(s)	98
Bst2BI	CACGAG	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	404, 627
Bst6I	CTCTTC	1 cut(s)	559
BstDEI	CTNAG	3 cut(s)	362, 596, 726
BstF5I	GGATG	3 cut(s)	709, 739, 757
BstKTI	GATC	3 cut(s)	318, 430, 709
BstMBI	GATC	3 cut(s)	315, 427, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	490
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	175
BsuTUI	ATCGAT	1 cut(s)	318
BtsCI	GGATG	3 cut(s)	709, 739, 757
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	4 cut(s)	129, 349, 520, 689
CviJI	RGCY	9 cut(s)	16, 82, 103, 175, 255, 347, 382, 509, 700
CviKI_1	RGCY	9 cut(s)	16, 82, 103, 175, 255, 347, 382, 509, 700
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	3 cut(s)	362, 596, 726
DpnI	GATC	3 cut(s)	317, 429, 708
DpnII	GATC	3 cut(s)	315, 427, 706
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	559
EarI	CTCTTC	1 cut(s)	559
Eco32I	GATATC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	186
EcoRI	GAATTC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	490
EcoRV	GATATC	1 cut(s)	635
FaeI	CATG	4 cut(s)	132, 352, 523, 692
FalI	AAGNNNNNCTT	2 cut(s)	727, 759
FatI	CATG	4 cut(s)	128, 348, 519, 688
FauNDI	CATATG	1 cut(s)	711
FbaI	TGATCA	2 cut(s)	427, 706
FokI	GGATG	3 cut(s)	716, 726, 764
FspBI	CTAG	1 cut(s)	781
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	175
Hin1II	CATG	4 cut(s)	132, 352, 523, 692
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	7 cut(s)	41, 120, 497, 577, 670, 682, 718
HphI	GGTGA	3 cut(s)	25, 262, 443
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	6 cut(s)	187, 272, 576, 639, 669, 681
Hpy188III	TCNNGA	2 cut(s)	504, 650
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	2 cut(s)	404, 627
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	3 cut(s)	362, 596, 726
Hsp92II	CATG	4 cut(s)	132, 352, 523, 692
Ksp22I	TGATCA	2 cut(s)	427, 706
Kzo9I	GATC	3 cut(s)	315, 427, 706
LmnI	GCTCC	2 cut(s)	232, 506
LpnPI	CCDG	6 cut(s)	157, 177, 477, 504, 575, 686
MaeI	CTAG	1 cut(s)	781
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	3 cut(s)	317, 429, 708
MboI	GATC	3 cut(s)	315, 427, 706
MboII	GAAGA	5 cut(s)	22, 253, 419, 492, 546
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	6 cut(s)	181, 208, 385, 583, 657, 675
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	50, 679
MmeI	TCCRAC	2 cut(s)	210, 379
MnlI	CCTC	2 cut(s)	324, 685
Mox20I	TGGCCA	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	175
MseI	TTAA	4 cut(s)	192, 384, 438, 588
Msp20I	TGGCCA	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	1 cut(s)	515
NdeI	CATATG	1 cut(s)	711
NdeII	GATC	3 cut(s)	315, 427, 706
NlaIII	CATG	4 cut(s)	132, 352, 523, 692
NspI	RCATGY	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	5 cut(s)	120, 497, 577, 682, 718
PleI	GAGTC	2 cut(s)	49, 678
PpsI	GAGTC	2 cut(s)	49, 678
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SaqAI	TTAA	4 cut(s)	192, 384, 438, 588
Sau3AI	GATC	3 cut(s)	315, 427, 706
SchI	GAGTC	2 cut(s)	50, 679
ScrFI	CCNGG	1 cut(s)	492
SetI	ASST	8 cut(s)	18, 24, 105, 265, 384, 493, 511, 547
Sse9I	AATT	6 cut(s)	181, 208, 385, 583, 657, 675
SsiI	CCGC	2 cut(s)	117, 326
SspMI	CTAG	1 cut(s)	781
StyD4I	CCNGG	1 cut(s)	490
TaaI	ACNGT	2 cut(s)	404, 627
TaqI	TCGA	3 cut(s)	123, 179, 318
TasI	AATT	6 cut(s)	181, 208, 385, 583, 657, 675
TatI	WGTACW	1 cut(s)	420
TfiI	GAWTC	5 cut(s)	120, 497, 577, 682, 718
Tru1I	TTAA	4 cut(s)	192, 384, 438, 588
Tru9I	TTAA	4 cut(s)	192, 384, 438, 588
TscAI	CASTG	1 cut(s)	141
TspDTI	ATGAA	2 cut(s)	353, 731
TspGWI	ACGGA	2 cut(s)	97, 138
TspRI	CASTG	1 cut(s)	141
XapI	RAATTY	5 cut(s)	181, 208, 583, 657, 675
XceI	RCATGY	1 cut(s)	132
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XspI	CTAG	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.