Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

27681102 .. 27681611

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1186100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAGATGTATGAAATCAATAAACTTTGTGATGTTCTAACATGTGCTATCATGTGCAGTCCAAATAAGTCTCAACCTGATGCCCTGCCTGATCATTCAGAAGTGCGACGCCTCATCGAGCAGTTCAAGAACATGCCCGAGGAGGAGCGAAACAAAGTGATGGTAAACTATAAGATGTTTCTGAAGCAGATGGTCGACATGGAGCTGGAGAAGGTAAACAAGCTGGAGAAAGAGAACCGAGAATTGGAAATTTGGATGGCAATGAACCAGTTCATTGCTGGGAAGCCCCTGAACGACTTGCAGTTCACTGATTTAAAGGAAATGAGGAGGATGACCAAAGAAAAATTGAAGGAATTTGAAGCGAAGATCAAGAGCTGGAAGGAGGAGCTGGCGAAGATGAATCAACTCTTAGGTGCACAACCGGTGACTACAGTAGCTGGTGAGAACATTCAGAACGCCATGCAGATGGTTCCATGGTCCATGTGGGACGTGCCGACCAAAAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0043401 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

170

Amino Acids

19.94

Weight (kDa)

6.63

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	195
AcsI	RAATTY	2 cut(s)	249, 353
AcuI	CTGAAG	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	244
AflIII	ACRYGT	1 cut(s)	41
AgeI	ACCGGT	1 cut(s)	421
AgsI	TTSAA	3 cut(s)	127, 349, 359
AjiI	CACGTC	1 cut(s)	490
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	5 cut(s)	205, 223, 375, 388, 437
AluI	AGCT	5 cut(s)	205, 223, 375, 388, 437
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	75
Alw44I	GTGCAC	1 cut(s)	414
AlwNI	CAGNNNCTG	1 cut(s)	437
Ama87I	CYCGRG	1 cut(s)	137
ApaLI	GTGCAC	1 cut(s)	414
ApoI	RAATTY	2 cut(s)	249, 353
AsiGI	ACCGGT	1 cut(s)	421
Asp700I	GAANNNNTTC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	477
AsuHPI	GGTGA	2 cut(s)	436, 452
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	477
BaeGI	GKGCMC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	418
BccI	CCATC	4 cut(s)	154, 184, 250, 460
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	429
Bme18I	GGWCC	1 cut(s)	477
BmeT110I	CYCGRG	1 cut(s)	137
BmgBI	CACGTC	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	477
BmiI	GGNNCC	1 cut(s)	471
BmsI	GCATC	1 cut(s)	70
BpmI	CTGGAG	2 cut(s)	227, 245
BsaHI	GRCGYC	1 cut(s)	109
BsaJI	CCNNGG	2 cut(s)	138, 473
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	2 cut(s)	267, 273
BseDI	CCNNGG	2 cut(s)	138, 473
BseGI	GGATG	2 cut(s)	261, 336
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMI	GCAATG	2 cut(s)	267, 273
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	4 cut(s)	155, 158, 340, 398
BseSI	GKGCMC	1 cut(s)	418
BseYI	CCCAGC	1 cut(s)	278
BsgI	GTGCAG	1 cut(s)	76
BshTI	ACCGGT	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	500
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	91, 366
Bsp19I	CCATGG	1 cut(s)	473
BspLI	GGNNCC	1 cut(s)	471
BsrDI	GCAATG	2 cut(s)	267, 273
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	138, 473
BssMI	GATC	2 cut(s)	91, 366
BssNI	GRCGYC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	473
Bst4CI	ACNGT	1 cut(s)	433
BstACI	GRCGYC	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	1 cut(s)	409
BstDSI	CCRYGG	1 cut(s)	473
BstF5I	GGATG	2 cut(s)	261, 336
BstKTI	GATC	2 cut(s)	94, 369
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	2 cut(s)	91, 366
BstNSI	RCATGY	2 cut(s)	45, 136
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	418
BstXI	CCANNNNNNTGG	1 cut(s)	466
BtgI	CCRYGG	1 cut(s)	473
BtrI	CACGTC	1 cut(s)	490
BtsCI	GGATG	2 cut(s)	261, 336
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	390
CaiI	CAGNNNCTG	1 cut(s)	437
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	477
CseI	GACGC	1 cut(s)	117
CspAI	ACCGGT	1 cut(s)	421
CviAII	CATG	7 cut(s)	42, 52, 133, 199, 460, 474, 481
CviJI	RGCY	6 cut(s)	205, 223, 286, 375, 388, 437
CviKI_1	RGCY	6 cut(s)	205, 223, 286, 375, 388, 437
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	2 cut(s)	93, 368
DpnII	GATC	2 cut(s)	91, 366
DraI	TTTAAA	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	477
Eco57I	CTGAAG	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	7 cut(s)	45, 55, 136, 202, 463, 477, 484
FaiI	YATR	9 cut(s)	12, 43, 53, 134, 171, 200, 461, 475, 482
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	7 cut(s)	41, 51, 132, 198, 459, 473, 480
FbaI	TGATCA	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	195
FokI	GGATG	2 cut(s)	268, 343
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	2 cut(s)	227, 245
HapII	CCGG	1 cut(s)	422
HgaI	GACGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	109
Hin1II	CATG	7 cut(s)	45, 55, 136, 202, 463, 477, 484
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	1 cut(s)	400
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	2 cut(s)	436, 452
Hpy166II	GTNNAC	5 cut(s)	166, 196, 217, 306, 416
Hpy188I	TCNGA	3 cut(s)	100, 183, 453
Hpy188III	TCNNGA	3 cut(s)	127, 370, 507
Hpy8I	GTNNAC	5 cut(s)	166, 196, 217, 306, 416
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	3 cut(s)	205, 343, 373
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	4 cut(s)	57, 301, 416, 463
HpyF3I	CTNAG	1 cut(s)	409
HpySE526I	ACGT	1 cut(s)	489
Hsp92I	GRCGYC	1 cut(s)	109
Hsp92II	CATG	7 cut(s)	45, 55, 136, 202, 463, 477, 484
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	91, 366
LmnI	GCTCC	3 cut(s)	145, 202, 385
LweI	GCATC	1 cut(s)	70
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	2 cut(s)	93, 368
MboI	GATC	2 cut(s)	91, 366
MboII	GAAGA	3 cut(s)	16, 376, 406
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	4 cut(s)	242, 249, 344, 353
MnlI	CCTC	6 cut(s)	122, 133, 136, 318, 321, 376
MroXI	GAANNNNTTC	1 cut(s)	269
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	464
MspI	CCGG	1 cut(s)	422
NcoI	CCATGG	1 cut(s)	473
NdeII	GATC	2 cut(s)	91, 366
NlaIII	CATG	7 cut(s)	45, 55, 136, 202, 463, 477, 484
NlaIV	GGNNCC	1 cut(s)	471
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	2 cut(s)	45, 136
PciI	ACATGT	1 cut(s)	41
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	400
PinAI	ACCGGT	1 cut(s)	421
PscI	ACATGT	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	477
PstNI	CAGNNNCTG	1 cut(s)	437
RseI	CAYNNNNRTG	1 cut(s)	464
SalI	GTCGAC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	314
Sau3AI	GATC	2 cut(s)	91, 366
Sau96I	GGNCC	1 cut(s)	477
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	9 cut(s)	79, 207, 216, 225, 377, 390, 415, 439, 492
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	464
Sse9I	AATT	4 cut(s)	242, 249, 344, 353
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	2 cut(s)	117, 195
TasI	AATT	4 cut(s)	242, 249, 344, 353
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	5 cut(s)	17, 27, 262, 278, 413
TspRI	CASTG	1 cut(s)	313
VneI	GTGCAC	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	477
XapI	RAATTY	2 cut(s)	249, 353
XceI	RCATGY	2 cut(s)	45, 136
XcmI	CCANNNNNNNNNTGG	2 cut(s)	275, 480
XmiI	GTMKAC	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.