Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

7135019 .. 7135489

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG091400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAAGAACATTAAGGAGGAGGCTGTGAAGAGCCAGAACCAAGTGCAAGGAGCACAAGGGGTGTCGGCTGCTGCAACGGAATATAGAATGGCAGCGATGAAGAGTAATGGAGAGGGCAGCAGCAGCAACATGGCGATGAAGACTGGTGAAGAGAGCAGCAACATGCAGCATGCAGCCCTTGACAGGCAAGTTTTTGATCACATGCATAACATGGAGGCAATGCAGCTCCAAATGATGCAGATGGCAGCTCAGAAGCAGCAGAACCCTTGGTTCATGGACATGATGAATGCGCCACCACCAACACCACTGCCACATCCAGATCATCATCAGCATATGGGGTTTACCGGGGAGGATATGATGGTTCCTTTCGCGGATCATAACCACAATACTATGTGGCCAAATCCTCCTCCTGCTGGCGGCTTTAATTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

144

Amino Acids

16.07

Weight (kDa)

5.77

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	371
AciI	CCGC	2 cut(s)	371, 417
AclWI	GGATC	1 cut(s)	381
AcoI	YGGCCR	1 cut(s)	395
AfiI	CCNNNNNNNGG	3 cut(s)	183, 413, 416
AluBI	AGCT	2 cut(s)	226, 248
AluI	AGCT	2 cut(s)	226, 248
Alw21I	GWGCWC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	381
AoxI	GGCC	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	55
BccI	CCATC	2 cut(s)	235, 352
BclI	TGATCA	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	346
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	266, 345
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 413, 416
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	266, 345
BseGI	GGATG	1 cut(s)	313
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	183, 413, 416
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	32, 396
Bsh1236I	CGCG	1 cut(s)	371
BshFI	GGCC	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	345
BslI	CCNNNNNNNGG	3 cut(s)	183, 413, 416
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	397
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	196, 319, 373
BspACI	CCGC	2 cut(s)	371, 417
BspANI	GGCC	1 cut(s)	397
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	371
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	1 cut(s)	381
BspQI	GCTCTTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	266, 345
BssMI	GATC	3 cut(s)	196, 319, 373
BssT1I	CCWWGG	1 cut(s)	266
Bst6I	CTCTTC	3 cut(s)	23, 95, 144
BstC8I	GCNNGC	2 cut(s)	171, 415
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	3 cut(s)	199, 322, 376
BstMBI	GATC	3 cut(s)	196, 319, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNSI	RCATGY	3 cut(s)	166, 173, 205
BstSCI	CCNGG	1 cut(s)	344
BstUI	CGCG	1 cut(s)	371
BstV2I	GAAGAC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	397
BtgZI	GCGATG	2 cut(s)	110, 149
BtsCI	GGATG	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	171, 415
CfoI	GCGC	1 cut(s)	292
CviAII	CATG	7 cut(s)	130, 163, 170, 202, 211, 274, 280
CviJI	RGCY	8 cut(s)	23, 33, 68, 176, 226, 248, 397, 420
CviKI_1	RGCY	8 cut(s)	23, 33, 68, 176, 226, 248, 397, 420
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	3 cut(s)	198, 321, 375
DpnII	GATC	3 cut(s)	196, 319, 373
EaeI	YGGCCR	1 cut(s)	395
Eam1104I	CTCTTC	3 cut(s)	23, 95, 144
EarI	CTCTTC	3 cut(s)	23, 95, 144
Eco130I	CCWWGG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	266
EcoT22I	ATGCAT	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	7 cut(s)	133, 166, 173, 205, 214, 277, 283
FatI	CATG	7 cut(s)	129, 162, 169, 201, 210, 273, 279
FauNDI	CATATG	1 cut(s)	333
FbaI	TGATCA	1 cut(s)	196
FokI	GGATG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	397
HapII	CCGG	1 cut(s)	345
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	7 cut(s)	133, 166, 173, 205, 214, 277, 283
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	1 cut(s)	342
HpyCH4V	TGCA	7 cut(s)	46, 74, 166, 173, 205, 223, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	7 cut(s)	133, 166, 173, 205, 214, 277, 283
HspAI	GCGC	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	3 cut(s)	196, 319, 373
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	50, 231
LpnPI	CCDG	7 cut(s)	47, 129, 169, 330, 358, 399, 423
LweI	GCATC	1 cut(s)	225
MalI	GATC	3 cut(s)	198, 321, 375
MboI	GATC	3 cut(s)	196, 319, 373
MboII	GAAGA	5 cut(s)	16, 40, 112, 151, 161
MhlI	GDGCHC	1 cut(s)	55
MlsI	TGGCCA	1 cut(s)	397
MluCI	AATT	1 cut(s)	424
MluNI	TGGCCA	1 cut(s)	397
MnlI	CCTC	7 cut(s)	10, 13, 106, 208, 343, 414, 417
Mox20I	TGGCCA	1 cut(s)	397
Mph1103I	ATGCAT	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	397
MseI	TTAA	2 cut(s)	12, 423
MslI	CAYNNNNRTG	2 cut(s)	134, 278
Msp20I	TGGCCA	1 cut(s)	397
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	346
Mva1269I	GAATGC	1 cut(s)	292
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	346
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	3 cut(s)	196, 319, 373
NlaIII	CATG	7 cut(s)	133, 166, 173, 205, 214, 277, 283
NlaIV	GGNNCC	1 cut(s)	363
NsiI	ATGCAT	1 cut(s)	207
NspI	RCATGY	3 cut(s)	166, 173, 205
PaeI	GCATGC	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	23
PctI	GAATGC	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	363
RseI	CAYNNNNRTG	2 cut(s)	134, 278
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	12, 423
Sau3AI	GATC	3 cut(s)	196, 319, 373
ScrFI	CCNGG	1 cut(s)	346
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	2 cut(s)	228, 250
SfaNI	GCATC	1 cut(s)	225
SmiMI	CAYNNNNRTG	2 cut(s)	134, 278
SphI	GCATGC	1 cut(s)	173
Sse9I	AATT	1 cut(s)	424
SsiI	CCGC	2 cut(s)	371, 417
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	266
TasI	AATT	1 cut(s)	424
TauI	GCSGC	1 cut(s)	420
Tru1I	TTAA	2 cut(s)	12, 423
Tru9I	TTAA	2 cut(s)	12, 423
TscAI	CASTG	1 cut(s)	312
TspDTI	ATGAA	5 cut(s)	17, 113, 152, 262, 299
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	312
XceI	RCATGY	3 cut(s)	166, 173, 205
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.