Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005124.1

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

60653 .. 64228

Gene Structure 3576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005124.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgtactcccagcgtaggctaggatcaatatgtcgcctcagaaacattaaggcatttgctttcaccttattagatggttcatcatctttggggctgctgttgttgggcggcggcggcggggggggcaatagcgagggtggcactgatacagaaggatctggctattgcgcaacaggcgtagggcaggaccgtgcggggcagagaggcgatgtgtcgcgcaaggcgagtcctagccgaaaaagaaagaagggccttctaaagaaggtgggagagataaccagtctctgtgacatcaaggctgcggtgatcatctacagcctatttgatgtcgagccggatgtgttcccaagtcatcctgaagtccacgaattgctaacaaagttcggagatatgccgcagatggataagacaagaaagatgatcgacttggagaccttcttaccacagcgaattgacaaagtttgggagcaggtcaaaaagcaaaaaagagacaaccgagaaaaggagatcactcaagccatgtttggttgtttgaaggggagaactctctttgacctagaaatgaaagatatgctagacctcaattttatcatccaactaaacctcagggaggttgaatcaagcagcgagtgcatttggggaggaaaccagcaaaggtgtggagcagtaacaacaccactaagccgcgatggaggcacaaacaatggagcagatgcaataccagatgatgtaaggtgcagctcagaggcaacaccaacaacaattattccagcatcaaccctggttcgtggacatcatgaacctgccaccgccacaaatgatggacttcctgcacccactaaccccgcttccgccaagatggttcagagactatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

291

Amino Acids

31.64

Weight (kDa)

8.43

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	169
Acc36I	ACCTGC	2 cut(s)	460, 811
AccII	CGCG	2 cut(s)	217, 687
AclWI	GGATC	2 cut(s)	31, 163
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	15, 502, 610
AgsI	TTSAA	2 cut(s)	535, 617
AjnI	CCWGG	1 cut(s)	780
AluBI	AGCT	1 cut(s)	741
AluI	AGCT	1 cut(s)	741
Alw26I	GTCTC	4 cut(s)	287, 425, 483, 862
AlwI	GGATC	2 cut(s)	31, 163
AlwNI	CAGNNNCTG	1 cut(s)	285
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	4 cut(s)	94, 299, 624, 738
AspLEI	GCGC	2 cut(s)	170, 219
AspS9I	GGNCC	2 cut(s)	187, 250
AsuHPI	GGTGA	2 cut(s)	55, 316
AvaII	GGWCC	1 cut(s)	187
AxyI	CCTNAGG	1 cut(s)	605
BbvI	GCAGC	4 cut(s)	81, 286, 636, 750
BccI	CCATC	5 cut(s)	68, 394, 683, 815, 853
BciT130I	CCWGG	1 cut(s)	782
BclI	TGATCA	1 cut(s)	306
BcoDI	GTCTC	4 cut(s)	287, 425, 483, 862
BfaI	CTAG	4 cut(s)	20, 231, 557, 575
BfmI	CTRYAG	2 cut(s)	313, 872
BfuAI	ACCTGC	2 cut(s)	460, 811
BisI	GCNGC	9 cut(s)	95, 109, 112, 115, 300, 395, 625, 685, 739
BlsI	GCNGC	9 cut(s)	96, 110, 113, 116, 301, 396, 626, 686, 740
Bme1390I	CCNGG	1 cut(s)	782
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	2 cut(s)	187, 250
BmrFI	CCNGG	1 cut(s)	782
BmsI	GCATC	2 cut(s)	703, 782
BpuEI	CTTGAG	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	780
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 502, 610
Bse1I	ACTGG	1 cut(s)	279
Bse21I	CCTNAGG	1 cut(s)	605
BseBI	CCWGG	1 cut(s)	782
BseDI	CCNNGG	1 cut(s)	780
BseGI	GGATG	3 cut(s)	343, 352, 591
BseLI	CCNNNNNNNGG	3 cut(s)	15, 502, 610
BseMII	CTCAG	3 cut(s)	52, 619, 756
BseNI	ACTGG	1 cut(s)	279
BseXI	GCAGC	4 cut(s)	81, 286, 636, 750
BseYI	CCCAGC	1 cut(s)	9
BsgI	GTGCAG	2 cut(s)	757, 816
Bsh1236I	CGCG	2 cut(s)	217, 687
BshFI	GGCC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	335
BslI	CCNNNNNNNGG	3 cut(s)	15, 502, 610
BsmAI	GTCTC	4 cut(s)	287, 425, 483, 862
BsnI	GGCC	1 cut(s)	252
Bso31I	GGTCTC	1 cut(s)	425
Bsp143I	GATC	5 cut(s)	23, 155, 306, 420, 507
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	3 cut(s)	51, 618, 755
BspFNI	CGCG	2 cut(s)	217, 687
BspHI	TCATGA	1 cut(s)	796
BspMI	ACCTGC	2 cut(s)	460, 811
BspPI	GGATC	2 cut(s)	31, 163
BspTNI	GGTCTC	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	780
BssMI	GATC	5 cut(s)	23, 155, 306, 420, 507
Bst2UI	CCWGG	1 cut(s)	782
Bst4CI	ACNGT	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	630
BstDEI	CTNAG	4 cut(s)	38, 605, 680, 742
BstENI	CCTNNNNNAGG	1 cut(s)	608
BstF5I	GGATG	3 cut(s)	343, 352, 591
BstFNI	CGCG	2 cut(s)	217, 687
BstHHI	GCGC	2 cut(s)	170, 219
BstKTI	GATC	5 cut(s)	26, 158, 309, 423, 510
BstMAI	GTCTC	4 cut(s)	287, 425, 483, 862
BstMBI	GATC	5 cut(s)	23, 155, 306, 420, 507
BstMWI	GCNNNNNNNGC	6 cut(s)	114, 123, 138, 174, 630, 693
BstNI	CCWGG	1 cut(s)	782
BstSCI	CCNGG	1 cut(s)	780
BstSFI	CTRYAG	2 cut(s)	313, 872
BstUI	CGCG	2 cut(s)	217, 687
BstV1I	GCAGC	4 cut(s)	81, 286, 636, 750
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
Bsu36I	CCTNAGG	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	252
BtgZI	GCGATG	2 cut(s)	222, 702
BtsCI	GGATG	3 cut(s)	343, 352, 591
BtsIMutI	CAGTG	1 cut(s)	141
BveI	ACCTGC	2 cut(s)	460, 811
CaiI	CAGNNNCTG	1 cut(s)	285
CciI	TCATGA	1 cut(s)	796
CfoI	GCGC	2 cut(s)	170, 219
Cfr13I	GGNCC	2 cut(s)	187, 250
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	520, 797
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	4 cut(s)	38, 605, 680, 742
DpnI	GATC	5 cut(s)	25, 157, 308, 422, 509
DpnII	GATC	5 cut(s)	23, 155, 306, 420, 507
EciI	GGCGGA	1 cut(s)	841
Eco31I	GGTCTC	1 cut(s)	425
Eco47I	GGWCC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	378
Eco81I	CCTNAGG	1 cut(s)	605
EcoNI	CCTNNNNNAGG	1 cut(s)	608
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	780
FaeI	CATG	2 cut(s)	523, 800
FaiI	YATR	6 cut(s)	31, 392, 521, 572, 798, 874
FatI	CATG	2 cut(s)	519, 796
FauI	CCCGC	3 cut(s)	110, 187, 853
FbaI	TGATCA	1 cut(s)	306
Fnu4HI	GCNGC	9 cut(s)	95, 109, 112, 115, 300, 395, 625, 685, 739
FokI	GGATG	3 cut(s)	339, 350, 578
Fsp4HI	GCNGC	9 cut(s)	95, 109, 112, 115, 300, 395, 625, 685, 739
FspBI	CTAG	4 cut(s)	20, 231, 557, 575
FspI	TGCGCA	1 cut(s)	169
GlaI	GCGC	2 cut(s)	169, 218
GluI	GCNGC	9 cut(s)	95, 109, 112, 115, 300, 395, 625, 685, 739
GsaI	CCCAGC	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	1 cut(s)	335
HhaI	GCGC	2 cut(s)	170, 219
Hin1II	CATG	2 cut(s)	523, 800
Hin6I	GCGC	2 cut(s)	168, 217
HinP1I	GCGC	2 cut(s)	168, 217
HinfI	GANTC	2 cut(s)	226, 617
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	2 cut(s)	55, 316
Hpy166II	GTNNAC	2 cut(s)	364, 791
Hpy188I	TCNGA	4 cut(s)	41, 386, 745, 867
Hpy188III	TCNNGA	2 cut(s)	356, 797
Hpy8I	GTNNAC	2 cut(s)	364, 791
HpyAV	CCTTC	6 cut(s)	146, 241, 256, 263, 445, 529
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	4 cut(s)	633, 716, 738, 833
HpyF10VI	GCNNNNNNNGC	6 cut(s)	114, 123, 138, 174, 630, 693
HpyF3I	CTNAG	4 cut(s)	38, 605, 680, 742
Hsp92II	CATG	2 cut(s)	523, 800
HspAI	GCGC	2 cut(s)	168, 217
Ksp22I	TGATCA	1 cut(s)	306
Kzo9I	GATC	5 cut(s)	23, 155, 306, 420, 507
LmnI	GCTCC	3 cut(s)	466, 662, 707
Lsp1109I	GCAGC	4 cut(s)	81, 286, 636, 750
LweI	GCATC	2 cut(s)	703, 782
MaeI	CTAG	4 cut(s)	20, 231, 557, 575
MaeIII	GTNAC	2 cut(s)	287, 667
MalI	GATC	5 cut(s)	25, 157, 308, 422, 509
MboI	GATC	5 cut(s)	23, 155, 306, 420, 507
MflI	RGATCY	1 cut(s)	155
MluCI	AATT	4 cut(s)	368, 450, 583, 762
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	619
MnlI	CCTC	9 cut(s)	47, 127, 197, 590, 604, 614, 635, 686, 739
MseI	TTAA	1 cut(s)	48
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	782
MvaI	CCWGG	1 cut(s)	782
MvnI	CGCG	2 cut(s)	217, 687
MwoI	GCNNNNNNNGC	6 cut(s)	114, 123, 138, 174, 630, 693
NdeII	GATC	5 cut(s)	23, 155, 306, 420, 507
NlaIII	CATG	2 cut(s)	523, 800
NmuCI	GTSAC	1 cut(s)	287
NsbI	TGCGCA	1 cut(s)	169
PagI	TCATGA	1 cut(s)	796
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	617
PkrI	GCNGC	9 cut(s)	96, 110, 113, 116, 301, 396, 626, 686, 740
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	780
PspFI	CCCAGC	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	780
PspPI	GGNCC	2 cut(s)	187, 250
PstNI	CAGNNNCTG	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	9 cut(s)	95, 109, 112, 115, 300, 395, 625, 685, 739
Sau3AI	GATC	5 cut(s)	23, 155, 306, 420, 507
Sau96I	GGNCC	2 cut(s)	187, 250
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	782
SfaNI	GCATC	2 cut(s)	703, 782
SfcI	CTRYAG	2 cut(s)	313, 872
SinI	GGWCC	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	4 cut(s)	368, 450, 583, 762
SspMI	CTAG	4 cut(s)	20, 231, 557, 575
StyD4I	CCNGG	1 cut(s)	780
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	330, 423
TasI	AATT	4 cut(s)	368, 450, 583, 762
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	5 cut(s)	111, 114, 117, 397, 687
TfiI	GAWTC	1 cut(s)	617
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	4 cut(s)	94, 299, 624, 738
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	3 cut(s)	69, 578, 813
TspRI	CASTG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	187
XagI	CCTNNNNNAGG	1 cut(s)	608
XcmI	CCANNNNNNNNNTGG	1 cut(s)	656
XspI	CTAG	4 cut(s)	20, 231, 557, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.