Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

56771875 .. 56772615

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G032610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAAAGAGATCACCACTCTTTGTGACATTAAGGCTGCGGCGATCATCTACAGTCCCTTTGAAACAGAGCCTGAGGTCTTCCCAAATCATCGGGAAGCCCACGAAATGCTGACAATGTTTCGAAATATGCCGGAGATGGACAAGACAAGAAGGATGATGGACCAGGAGATCTTCTTACGACAACGAATAGACAAAACCCGAGAGCAGATAAGAAAGCAGAAAAGAGACAATCGGGAGAAGCAGATTACTCAAGTTATGTTCGACTGCTTGAAGGGGAAAACCATCTCTAACCTTGAAAAGAAGGATCTGAATGACCTCACTTTTATAATCGAACAGAACCTCAGGGAGTTAGATATCAAAGAGCAGGCTAAGGAGGAGCACAAGCAGGAGGAGAACCAGCTTAACCAGATGCCAGGTGCGCCAACTGCTGTGGAGCTTGACTTGACGAGGAATGCATTTGGAGAGGGAACAAGCAGAGGCGTGGGGCAGCAGCAGCACCCGGCCACGATGGATGCACAGAGTATGGAGCAGATGCATTACCAAATGATGCAGGTTGCGGCGCAGAGGCAGCCTCAACAGATGCTCCAACAGCAACCCTGGTTCGTGGACATCATGAATCCACCATCGCCGCAGACAATGGACTTCCTGCAGCCGCTACCACCGCTTCCACCAGGAGCGTTCGGAGACATCAGCAGCATAAATGCTACATGGCCAAATAATTCGTCATTCCGTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

246

Amino Acids

28.71

Weight (kDa)

5.49

Isoelectric Point (pI)

63.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
Acc36I	ACCTGC	1 cut(s)	541
AciI	CCGC	5 cut(s)	38, 557, 629, 653, 662
AclWI	GGATC	1 cut(s)	312
AcoI	YGGCCR	2 cut(s)	501, 710
AgsI	TTSAA	3 cut(s)	62, 271, 296
AjnI	CCWGG	4 cut(s)	162, 412, 596, 670
AluBI	AGCT	2 cut(s)	400, 436
AluI	AGCT	2 cut(s)	400, 436
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	219, 678
AlwI	GGATC	1 cut(s)	312
AlwNI	CAGNNNCTG	1 cut(s)	71
Ama87I	CYCGRG	1 cut(s)	198
AoxI	GGCC	2 cut(s)	501, 710
ApeKI	GCWGC	7 cut(s)	35, 487, 490, 493, 568, 649, 693
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
AspLEI	GCGC	2 cut(s)	421, 562
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	500
AsuHPI	GGTGA	1 cut(s)	4
AsuII	TTCGAA	1 cut(s)	121
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	160
AxyI	CCTNAGG	2 cut(s)	72, 341
BalI	TGGCCA	1 cut(s)	712
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	7 cut(s)	22, 499, 502, 505, 580, 661, 705
BccI	CCATC	5 cut(s)	130, 151, 290, 502, 631
BciT130I	CCWGG	4 cut(s)	164, 414, 598, 672
BcnI	CCSGG	1 cut(s)	500
BcoDI	GTCTC	2 cut(s)	219, 678
BfmI	CTRYAG	2 cut(s)	49, 647
BfuAI	ACCTGC	1 cut(s)	541
BglII	AGATCT	1 cut(s)	168
Bme1390I	CCNGG	5 cut(s)	164, 414, 500, 598, 672
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	160
BmrFI	CCNGG	5 cut(s)	164, 414, 500, 598, 672
BmsI	GCATC	5 cut(s)	399, 502, 522, 537, 570
BpiI	GAAGAC	1 cut(s)	70
BplI	GAGNNNNNCTC	2 cut(s)	556, 588
Bpu10I	CCTNAGC	1 cut(s)	369
Bpu14I	TTCGAA	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	596
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bse21I	CCTNAGG	2 cut(s)	72, 341
BseBI	CCWGG	4 cut(s)	164, 414, 598, 672
BseDI	CCNNGG	1 cut(s)	596
BseGI	GGATG	2 cut(s)	159, 517
BseMII	CTCAG	2 cut(s)	63, 355
BseRI	GAGGAG	2 cut(s)	389, 404
BseXI	GCAGC	7 cut(s)	22, 499, 502, 505, 580, 661, 705
BshFI	GGCC	2 cut(s)	503, 712
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	131, 500
BslFI	GGGAC	1 cut(s)	39
BsmAI	GTCTC	2 cut(s)	219, 678
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	503, 712
BsoBI	CYCGRG	1 cut(s)	198
Bsp119I	TTCGAA	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	9, 42, 168, 304
BspACI	CCGC	5 cut(s)	38, 557, 629, 653, 662
BspANI	GGCC	2 cut(s)	503, 712
BspCNI	CTCAG	2 cut(s)	64, 354
BspHI	TCATGA	1 cut(s)	612
BspMAI	CTGCAG	1 cut(s)	651
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	1 cut(s)	312
BspT104I	TTCGAA	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	596
BssMI	GATC	4 cut(s)	9, 42, 168, 304
Bst2UI	CCWGG	4 cut(s)	164, 414, 598, 672
Bst4CI	ACNGT	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	3 cut(s)	72, 341, 369
BstF5I	GGATG	2 cut(s)	159, 517
BstHHI	GCGC	2 cut(s)	421, 562
BstKTI	GATC	4 cut(s)	12, 45, 171, 307
BstMAI	GTCTC	2 cut(s)	219, 678
BstMBI	GATC	4 cut(s)	9, 42, 168, 304
BstMWI	GCNNNNNNNGC	6 cut(s)	418, 425, 493, 568, 589, 661
BstNI	CCWGG	4 cut(s)	164, 414, 598, 672
BstSCI	CCNGG	5 cut(s)	162, 412, 498, 596, 670
BstSFI	CTRYAG	2 cut(s)	49, 647
BstV1I	GCAGC	7 cut(s)	22, 499, 502, 505, 580, 661, 705
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	2 cut(s)	168, 304
BstYI	RGATCY	2 cut(s)	168, 304
Bsu36I	CCTNAGG	2 cut(s)	72, 341
BsuRI	GGCC	2 cut(s)	503, 712
BtgZI	GCGATG	1 cut(s)	609
BtsCI	GGATG	2 cut(s)	159, 517
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	1 cut(s)	366
CaiI	CAGNNNCTG	1 cut(s)	71
CciI	TCATGA	1 cut(s)	612
CfoI	GCGC	2 cut(s)	421, 562
Cfr13I	GGNCC	1 cut(s)	160
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CviAII	CATG	2 cut(s)	613, 708
DdeI	CTNAG	3 cut(s)	72, 341, 369
DpnI	GATC	4 cut(s)	11, 44, 170, 306
DpnII	GATC	4 cut(s)	9, 42, 168, 304
EaeI	YGGCCR	2 cut(s)	501, 710
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	160
Eco81I	CCTNAGG	2 cut(s)	72, 341
Eco88I	CYCGRG	1 cut(s)	198
EcoRII	CCWGG	4 cut(s)	162, 412, 596, 670
EcoRV	GATATC	1 cut(s)	355
EcoT22I	ATGCAT	2 cut(s)	457, 537
FaeI	CATG	2 cut(s)	616, 711
FaiI	YATR	7 cut(s)	128, 257, 326, 524, 614, 698, 709
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	2 cut(s)	612, 707
FokI	GGATG	2 cut(s)	166, 524
GlaI	GCGC	2 cut(s)	420, 561
HaeIII	GGCC	2 cut(s)	503, 712
HapII	CCGG	2 cut(s)	131, 500
HhaI	GCGC	2 cut(s)	421, 562
Hin1II	CATG	2 cut(s)	616, 711
Hin6I	GCGC	2 cut(s)	419, 560
HinP1I	GCGC	2 cut(s)	419, 560
HinfI	GANTC	1 cut(s)	616
HpaII	CCGG	2 cut(s)	131, 500
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	2 cut(s)	309, 683
Hpy188III	TCNNGA	3 cut(s)	92, 233, 613
Hpy8I	GTNNAC	1 cut(s)	607
HpyAV	CCTTC	3 cut(s)	144, 265, 295
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	5 cut(s)	455, 515, 535, 550, 649
HpyF10VI	GCNNNNNNNGC	6 cut(s)	418, 425, 493, 568, 589, 661
HpyF3I	CTNAG	3 cut(s)	72, 341, 369
Hsp92II	CATG	2 cut(s)	616, 711
HspAI	GCGC	2 cut(s)	419, 560
Kzo9I	GATC	4 cut(s)	9, 42, 168, 304
LmnI	GCTCC	5 cut(s)	376, 433, 526, 588, 674
Lsp1109I	GCAGC	7 cut(s)	22, 499, 502, 505, 580, 661, 705
LweI	GCATC	5 cut(s)	399, 502, 522, 537, 570
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	4 cut(s)	11, 44, 170, 306
MboI	GATC	4 cut(s)	9, 42, 168, 304
MboII	GAAGA	2 cut(s)	70, 163
MflI	RGATCY	2 cut(s)	168, 304
MhlI	GDGCHC	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	712
MluCI	AATT	1 cut(s)	718
MluNI	TGGCCA	1 cut(s)	712
MmeI	TCCRAC	1 cut(s)	610
Mox20I	TGGCCA	1 cut(s)	712
Mph1103I	ATGCAT	2 cut(s)	457, 537
MscI	TGGCCA	1 cut(s)	712
MseI	TTAA	2 cut(s)	30, 402
Msp20I	TGGCCA	1 cut(s)	712
MspI	CCGG	2 cut(s)	131, 500
MspR9I	CCNGG	5 cut(s)	164, 414, 500, 598, 672
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	4 cut(s)	164, 414, 598, 672
MwoI	GCNNNNNNNGC	6 cut(s)	418, 425, 493, 568, 589, 661
NciI	CCSGG	1 cut(s)	500
NdeII	GATC	4 cut(s)	9, 42, 168, 304
NlaIII	CATG	2 cut(s)	616, 711
NmuCI	GTSAC	1 cut(s)	23
NsiI	ATGCAT	2 cut(s)	457, 537
NspV	TTCGAA	1 cut(s)	121
PagI	TCATGA	1 cut(s)	612
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	616
PsiI	TTATAA	1 cut(s)	326
Psp6I	CCWGG	4 cut(s)	162, 412, 596, 670
PspGI	CCWGG	4 cut(s)	162, 412, 596, 670
PspPI	GGNCC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	651
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	168, 304
SaqAI	TTAA	2 cut(s)	30, 402
Sau3AI	GATC	4 cut(s)	9, 42, 168, 304
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	5 cut(s)	164, 414, 500, 598, 672
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	8 cut(s)	78, 294, 318, 342, 402, 418, 438, 555
SfaNI	GCATC	5 cut(s)	399, 502, 522, 537, 570
SfcI	CTRYAG	2 cut(s)	49, 647
SfuI	TTCGAA	1 cut(s)	121
SinI	GGWCC	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	1 cut(s)	718
SsiI	CCGC	5 cut(s)	38, 557, 629, 653, 662
StyD4I	CCNGG	5 cut(s)	162, 412, 498, 596, 670
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	3 cut(s)	121, 261, 330
TasI	AATT	1 cut(s)	718
TauI	GCSGC	4 cut(s)	41, 560, 631, 655
TfiI	GAWTC	1 cut(s)	616
Tru1I	TTAA	2 cut(s)	30, 402
Tru9I	TTAA	2 cut(s)	30, 402
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	7 cut(s)	35, 487, 490, 493, 568, 649, 693
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	17, 629
TspGWI	ACGGA	1 cut(s)	719
VpaK11BI	GGWCC	1 cut(s)	160
Zsp2I	ATGCAT	2 cut(s)	457, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.