Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

1122040 .. 1122711

Gene Structure 672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g01090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCTCGAAAGAAGGTGAAGCTTGCCTACATCCAAAACCACCCAACTCGAAAACTAACATTCAAAAAAAGAAAGAACGGTTTCATGAAAAAGATGAGTGAAATCACTACCCTTTGTGATGTTGAGGCCTGTGCTGTCGTTTACGGACAGAACGATACTCAGCCTGAGGTTTGGCCATCTCCTTCGGGAGTACAAAGCACATACGCCAAGTTCAGGACAATGCCGCCAATGGAGCAGACCAAAAAGCAGCTGAACATGGAGGCTTTTCTGAGGCAGCAGATCGAGAAGGCAAAGGACCAGCTGAGGAAACAGAAGAAGGAGAATCGGGAGAAAGAAATGTCAATCCTGATGAGTCAGTGTCTAACTGGGAGGTCCCTGCAAGATCTGAATATGGGGGATCTGAATGACCTAGGGTGGGTGGTTGACCACAAAGTGGAGGAGATAAACAGAAAAGTGAAGAAAGTGCAGGAAGAGCTGGCTCAAAACGAGAACAATCATGTCCAAGTAGTACCAACACCACCACCAGCGACTAGTGGCAGAATAATGCACATGCAACAAGCTCAGTCGGCTGCACCGATGGAGATAATGACTCCACAAGACCAGCAGCCGCAAGAGCAGATGGCGGGGCTTGGAGCAAACACTGGGGACGAATTTCTGCAGTTTGGGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

224

Amino Acids

25.48

Weight (kDa)

9.17

Isoelectric Point (pI)

67.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 52	1.5e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	433
AciI	CCGC	3 cut(s)	224, 608, 623
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	650
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	2 cut(s)	192, 510
AfiI	CCNNNNNNNGG	3 cut(s)	213, 415, 433
AgsI	TTSAA	1 cut(s)	64
AhlI	ACTAGT	1 cut(s)	530
AluBI	AGCT	5 cut(s)	22, 250, 301, 475, 560
AluI	AGCT	5 cut(s)	22, 250, 301, 475, 560
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	2 cut(s)	126, 173
ApeKI	GCWGC	4 cut(s)	247, 274, 569, 604
ApoI	RAATTY	1 cut(s)	650
Asp700I	GAANNNNTTC	1 cut(s)	80
AspA2I	CCTAGG	1 cut(s)	409
AspS9I	GGNCC	2 cut(s)	295, 372
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	2 cut(s)	295, 372
AvrII	CCTAGG	1 cut(s)	409
AxyI	CCTNAGG	1 cut(s)	165
BalI	TGGCCA	1 cut(s)	175
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	4 cut(s)	259, 286, 556, 616
BccI	CCATC	3 cut(s)	184, 571, 613
BcoDI	GTCTC	1 cut(s)	9
BcuI	ACTAGT	1 cut(s)	530
BfaI	CTAG	2 cut(s)	410, 531
BfmI	CTRYAG	1 cut(s)	656
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	6 cut(s)	224, 248, 275, 570, 605, 608
BlnI	CCTAGG	1 cut(s)	409
BlsI	GCNGC	6 cut(s)	225, 249, 276, 571, 606, 609
Bme18I	GGWCC	2 cut(s)	295, 372
BmgT120I	GGNCC	2 cut(s)	295, 372
BmiI	GGNNCC	1 cut(s)	374
BmrI	ACTGGG	2 cut(s)	375, 651
BmuI	ACTGGG	2 cut(s)	375, 651
Bpu10I	CCTNAGC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 415, 433
Bse1I	ACTGG	2 cut(s)	370, 646
Bse21I	CCTNAGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	3 cut(s)	213, 415, 433
BseMII	CTCAG	5 cut(s)	156, 173, 260, 293, 575
BseNI	ACTGG	2 cut(s)	370, 646
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	4 cut(s)	259, 286, 556, 616
BsgI	GTGCAG	2 cut(s)	485, 555
BshFI	GGCC	2 cut(s)	128, 175
BslFI	GGGAC	2 cut(s)	358, 659
BslI	CCNNNNNNNGG	3 cut(s)	213, 415, 433
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	358, 659
BsnI	GGCC	2 cut(s)	128, 175
Bsp143I	GATC	3 cut(s)	279, 382, 397
BspACI	CCGC	3 cut(s)	224, 608, 623
BspANI	GGCC	2 cut(s)	128, 175
BspCNI	CTCAG	5 cut(s)	157, 172, 261, 294, 574
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	374
BspMAI	CTGCAG	1 cut(s)	660
BspPI	GGATC	1 cut(s)	405
BspQI	GCTCTTC	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	370, 646
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	3 cut(s)	279, 382, 397
BssT1I	CCWWGG	1 cut(s)	409
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	465
BstC8I	GCNNGC	2 cut(s)	24, 477
BstDEI	CTNAG	5 cut(s)	159, 165, 269, 302, 561
BstF5I	GGATG	1 cut(s)	30
BstKTI	GATC	3 cut(s)	282, 385, 400
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	279, 382, 397
BstMWI	GCNNNNNNNGC	4 cut(s)	232, 472, 566, 613
BstNSI	RCATGY	1 cut(s)	553
BstSFI	CTRYAG	1 cut(s)	656
BstV1I	GCAGC	4 cut(s)	259, 286, 556, 616
BstX2I	RGATCY	2 cut(s)	382, 397
BstYI	RGATCY	2 cut(s)	382, 397
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	128, 175
BtsCI	GGATG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	362, 639
Cac8I	GCNNGC	2 cut(s)	24, 477
CciI	TCATGA	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	295, 372
Csp6I	GTAC	2 cut(s)	191, 509
CviAII	CATG	4 cut(s)	85, 256, 497, 550
CviQI	GTAC	2 cut(s)	191, 509
DdeI	CTNAG	5 cut(s)	159, 165, 269, 302, 561
DpnI	GATC	3 cut(s)	281, 384, 399
DpnII	GATC	3 cut(s)	279, 382, 397
DraIII	CACNNNGTG	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	409
Eco147I	AGGCCT	1 cut(s)	128
Eco47I	GGWCC	2 cut(s)	295, 372
Eco81I	CCTNAGG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	4 cut(s)	88, 259, 500, 553
FaiI	YATR	6 cut(s)	86, 202, 257, 392, 498, 551
FaqI	GGGAC	2 cut(s)	358, 659
FatI	CATG	4 cut(s)	84, 255, 496, 549
FauI	CCCGC	1 cut(s)	616
Fnu4HI	GCNGC	6 cut(s)	224, 248, 275, 570, 605, 608
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	6 cut(s)	224, 248, 275, 570, 605, 608
FspBI	CTAG	2 cut(s)	410, 531
GluI	GCNGC	6 cut(s)	224, 248, 275, 570, 605, 608
HaeIII	GGCC	2 cut(s)	128, 175
Hin1II	CATG	4 cut(s)	88, 259, 500, 553
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	3 cut(s)	322, 352, 589
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	142, 424
Hpy188I	TCNGA	3 cut(s)	270, 387, 402
Hpy188III	TCNNGA	7 cut(s)	6, 85, 186, 214, 283, 326, 346
Hpy8I	GTNNAC	2 cut(s)	142, 424
HpyAV	CCTTC	4 cut(s)	7, 192, 280, 310
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	6 cut(s)	379, 466, 547, 553, 572, 658
HpyF10VI	GCNNNNNNNGC	4 cut(s)	232, 472, 566, 613
HpyF3I	CTNAG	5 cut(s)	159, 165, 269, 302, 561
Hsp92II	CATG	4 cut(s)	88, 259, 500, 553
Kzo9I	GATC	3 cut(s)	279, 382, 397
LguI	GCTCTTC	1 cut(s)	465
LmnI	GCTCC	2 cut(s)	232, 632
Lsp1109I	GCAGC	4 cut(s)	259, 286, 556, 616
MaeI	CTAG	2 cut(s)	410, 531
MalI	GATC	3 cut(s)	281, 384, 399
MboI	GATC	3 cut(s)	279, 382, 397
MboII	GAAGA	3 cut(s)	325, 469, 482
MflI	RGATCY	2 cut(s)	382, 397
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	1 cut(s)	650
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	361, 583
MnlI	CCTC	7 cut(s)	118, 160, 253, 264, 297, 363, 430
Mox20I	TGGCCA	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	175
Msp20I	TGGCCA	1 cut(s)	175
MspA1I	CMGCKG	2 cut(s)	250, 301
MwoI	GCNNNNNNNGC	4 cut(s)	232, 472, 566, 613
NdeII	GATC	3 cut(s)	279, 382, 397
NlaIII	CATG	4 cut(s)	88, 259, 500, 553
NlaIV	GGNNCC	1 cut(s)	374
NspI	RCATGY	1 cut(s)	553
PagI	TCATGA	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 572
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	6 cut(s)	225, 249, 276, 571, 606, 609
PleI	GAGTC	2 cut(s)	360, 583
PpsI	GAGTC	2 cut(s)	360, 583
PpuMI	RGGWCCY	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	374
PspPI	GGNCC	2 cut(s)	295, 372
PspPPI	RGGWCCY	1 cut(s)	372
PstI	CTGCAG	1 cut(s)	660
PsuI	RGATCY	2 cut(s)	382, 397
PvuII	CAGCTG	2 cut(s)	250, 301
RsaI	GTAC	2 cut(s)	192, 510
RsaNI	GTAC	2 cut(s)	191, 509
SapI	GCTCTTC	1 cut(s)	465
SatI	GCNGC	6 cut(s)	224, 248, 275, 570, 605, 608
Sau3AI	GATC	3 cut(s)	279, 382, 397
Sau96I	GGNCC	2 cut(s)	295, 372
SchI	GAGTC	2 cut(s)	361, 583
SetI	ASST	9 cut(s)	18, 24, 171, 252, 303, 374, 411, 477, 562
SfcI	CTRYAG	1 cut(s)	656
SinI	GGWCC	2 cut(s)	295, 372
SpeI	ACTAGT	1 cut(s)	530
Sse9I	AATT	1 cut(s)	650
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	3 cut(s)	224, 608, 623
SspMI	CTAG	2 cut(s)	410, 531
StuI	AGGCCT	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	80
TaqI	TCGA	3 cut(s)	7, 49, 282
TasI	AATT	1 cut(s)	650
TatI	WGTACW	1 cut(s)	190
TauI	GCSGC	2 cut(s)	226, 610
TfiI	GAWTC	1 cut(s)	322
TscAI	CASTG	2 cut(s)	362, 646
TseI	GCWGC	4 cut(s)	247, 274, 569, 604
TspDTI	ATGAA	2 cut(s)	73, 101
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	2 cut(s)	362, 646
Van91I	CCANNNNNTGG	1 cut(s)	433
VpaK11BI	GGWCC	2 cut(s)	295, 372
XapI	RAATTY	1 cut(s)	650
XceI	RCATGY	1 cut(s)	553
XmaJI	CCTAGG	1 cut(s)	409
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	2 cut(s)	410, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.