Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

40385533 .. 40390999

Gene Structure 5467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAGGATCATTACATTAACAAGCACAATTTCCGGTGCCCAGCCTCATCAATGCCGCCACCACCACCCAACACCCAATTCTCTTCTCCATACTTCTATCAACTTTAATGAAGAAACCCGACCGACCCGACCAGACCCGTGTTCCGACCCAACTTTTCCGGCGAGCTCGGCGGTCTCCGGTGGTGAAACTTTCCGCATCAACTTGCCTCCTTGTTCCGGTTGTCTCGTGGCAGCCTCTAGCGGGCGATTCTCGCCCACGGTGGTGCAAGTAAAGAGAAAAACTACATTCAAGAAAAGGAAAAACAGTATGATGAAGAAGTTGAGAGAACTAAGTACTCTTTGTGGAATTGAAGCATGTGCAATAGTTTACAGCCCATTTGATTTTGAACCCGAGGTTTGGCCTTCTTCTCATGCGGTTGAAAATGCTCTGAAAAAGTTAAAGGATATGCCTGCGATAGAGAAGAGTAGGAAGATGTTGAGCCAAGAAAGCTATCTGAAGGGGATGATCTCTAAAGCATACGCAAAGTTAAAGAGAGTGAGAAGGGAAAATTATGAGAAGGAATTGAGAGCTGTCATGTTCCAAAGTCTCACCAAAGGAATTCCTCAAATCCAGAATCTCAACTTGGTGGATATGGATGATCTTGGGCGGCTTATCAACCAAAAATTGAATGAGATTGATAACAGAAAAAAGAGTCTCGGTGAGGAGGTGACCGAAAGTCAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

241

Amino Acids

27.16

Weight (kDa)

9.53

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	91 - 125	1.3e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	6 cut(s)	55, 170, 193, 240, 413, 646
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	597
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	3 cut(s)	215, 240, 396
AgsI	TTSAA	5 cut(s)	289, 350, 386, 419, 667
AhdI	GACNNNNNGTC	1 cut(s)	714
AjuI	GAANNNNNNNTTGG	4 cut(s)	61, 93, 605, 637
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	3 cut(s)	165, 489, 569
AluI	AGCT	3 cut(s)	165, 489, 569
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	4 cut(s)	178, 227, 590, 698
AlwI	GGATC	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	597
AsuHPI	GGTGA	4 cut(s)	194, 580, 710, 718
AvaI	CYCGRG	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	242
BcoDI	GTCTC	4 cut(s)	178, 227, 590, 698
BfaI	CTAG	2 cut(s)	237, 724
BisI	GCNGC	3 cut(s)	55, 231, 647
BlsI	GCNGC	3 cut(s)	56, 232, 648
BmcAI	AGTACT	1 cut(s)	334
BmeRI	GACNNNNNGTC	1 cut(s)	714
BmeT110I	CYCGRG	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	37
BmsI	GCATC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	255, 390
BsaWI	WCCGGW	3 cut(s)	32, 176, 215
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 240, 396
BseDI	CCNNGG	2 cut(s)	255, 390
BseGI	GGATG	2 cut(s)	507, 640
BseLI	CCNNNNNNNGG	3 cut(s)	215, 240, 396
BseRI	GAGGAG	1 cut(s)	716
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	242
BseYI	CCCAGC	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	400
BshNI	GGYRCC	1 cut(s)	35
BsiEI	CGRYCG	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	167
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	4 cut(s)	33, 158, 177, 216
BslI	CCNNNNNNNGG	3 cut(s)	215, 240, 396
BsmAI	GTCTC	4 cut(s)	178, 227, 590, 698
BsnI	GGCC	1 cut(s)	400
Bso31I	GGTCTC	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	2 cut(s)	40, 167
Bsp143I	GATC	3 cut(s)	6, 504, 637
BspACI	CCGC	6 cut(s)	55, 170, 193, 240, 413, 646
BspANI	GGCC	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	255, 390
BssMI	GATC	3 cut(s)	6, 504, 637
BssSI	CACGAG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	259, 305
Bst6I	CTCTTC	2 cut(s)	87, 455
BstC8I	GCNNGC	3 cut(s)	163, 242, 450
BstDEI	CTNAG	1 cut(s)	329
BstDSI	CCRYGG	1 cut(s)	255
BstEII	GGTNACC	1 cut(s)	706
BstF5I	GGATG	2 cut(s)	507, 640
BstKTI	GATC	3 cut(s)	9, 507, 640
BstMAI	GTCTC	4 cut(s)	178, 227, 590, 698
BstMBI	GATC	3 cut(s)	6, 504, 637
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 250, 486
BstNSI	RCATGY	1 cut(s)	357
BstPI	GGTNACC	1 cut(s)	706
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	507, 640
Cac8I	GCNNGC	3 cut(s)	163, 242, 450
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	3 cut(s)	354, 410, 574
CviJI	RGCY	9 cut(s)	43, 165, 233, 372, 400, 480, 489, 569, 649
CviKI_1	RGCY	9 cut(s)	43, 165, 233, 372, 400, 480, 489, 569, 649
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	3 cut(s)	8, 506, 639
DpnII	GATC	3 cut(s)	6, 504, 637
DriI	GACNNNNNGTC	1 cut(s)	714
Eam1104I	CTCTTC	2 cut(s)	87, 455
Eam1105I	GACNNNNNGTC	1 cut(s)	714
EarI	CTCTTC	2 cut(s)	87, 455
Ecl136II	GAGCTC	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	515
Eco88I	CYCGRG	1 cut(s)	389
Eco91I	GGTNACC	1 cut(s)	706
EcoICRI	GAGCTC	1 cut(s)	165
EcoO65I	GGTNACC	1 cut(s)	706
EcoRI	GAATTC	1 cut(s)	597
EcoT38I	GRGCYC	1 cut(s)	167
FaeI	CATG	3 cut(s)	357, 413, 577
FaiI	YATR	9 cut(s)	90, 308, 355, 411, 446, 517, 552, 575, 632
FatI	CATG	3 cut(s)	353, 409, 573
FauI	CCCGC	1 cut(s)	233
Fnu4HI	GCNGC	3 cut(s)	55, 231, 647
FokI	GGATG	2 cut(s)	514, 647
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	3 cut(s)	55, 231, 647
FspBI	CTAG	2 cut(s)	237, 724
GluI	GCNGC	3 cut(s)	55, 231, 647
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	4 cut(s)	33, 158, 177, 216
Hin1II	CATG	3 cut(s)	357, 413, 577
HinfI	GANTC	3 cut(s)	246, 613, 691
HpaII	CCGG	4 cut(s)	33, 158, 177, 216
HphI	GGTGA	4 cut(s)	194, 580, 710, 718
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	4 cut(s)	145, 429, 495, 720
Hpy188III	TCNNGA	2 cut(s)	289, 610
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	4 cut(s)	411, 490, 534, 550
HpyCH4III	ACNGT	2 cut(s)	259, 305
HpyCH4V	TGCA	2 cut(s)	265, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 250, 486
HpyF3I	CTNAG	1 cut(s)	329
Hsp92II	CATG	3 cut(s)	357, 413, 577
Kzo9I	GATC	3 cut(s)	6, 504, 637
LpnPI	CCDG	8 cut(s)	46, 53, 144, 171, 190, 229, 462, 623
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	2 cut(s)	237, 724
MaeIII	GTNAC	1 cut(s)	706
MalI	GATC	3 cut(s)	8, 506, 639
MboI	GATC	3 cut(s)	6, 504, 637
MboII	GAAGA	6 cut(s)	74, 122, 325, 396, 472, 481
MhlI	GDGCHC	2 cut(s)	40, 167
MluCI	AATT	7 cut(s)	27, 76, 345, 547, 560, 597, 662
MlyI	GAGTC	1 cut(s)	700
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	7 cut(s)	54, 216, 244, 385, 612, 694, 697
MseI	TTAA	4 cut(s)	17, 105, 437, 527
MslI	CAYNNNNRTG	1 cut(s)	260
MspI	CCGG	4 cut(s)	33, 158, 177, 216
MwoI	GCNNNNNNNGC	3 cut(s)	167, 250, 486
NdeII	GATC	3 cut(s)	6, 504, 637
NlaIII	CATG	3 cut(s)	357, 413, 577
NlaIV	GGNNCC	1 cut(s)	37
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	706
NspI	RCATGY	1 cut(s)	357
OliI	CACNNNNGTG	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	246, 613
PkrI	GCNGC	3 cut(s)	56, 232, 648
PleI	GAGTC	1 cut(s)	699
PpsI	GAGTC	1 cut(s)	699
Psp124BI	GAGCTC	1 cut(s)	167
PspEI	GGTNACC	1 cut(s)	706
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
RseI	CAYNNNNRTG	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	167
SaqAI	TTAA	4 cut(s)	17, 105, 437, 527
SatI	GCNGC	3 cut(s)	55, 231, 647
Sau3AI	GATC	3 cut(s)	6, 504, 637
ScaI	AGTACT	1 cut(s)	334
SchI	GAGTC	1 cut(s)	700
SduI	GDGCHC	2 cut(s)	40, 167
SetI	ASST	5 cut(s)	167, 396, 491, 571, 708
SfaNI	GCATC	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	260
Sse9I	AATT	7 cut(s)	27, 76, 345, 547, 560, 597, 662
SsiI	CCGC	6 cut(s)	55, 170, 193, 240, 413, 646
SspMI	CTAG	2 cut(s)	237, 724
SstI	GAGCTC	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	259, 305
TaqII	GACCGA	2 cut(s)	136, 725
TasI	AATT	7 cut(s)	27, 76, 345, 547, 560, 597, 662
TatI	WGTACW	1 cut(s)	332
TauI	GCSGC	2 cut(s)	57, 649
TfiI	GAWTC	2 cut(s)	246, 613
Tru1I	TTAA	4 cut(s)	17, 105, 437, 527
Tru9I	TTAA	4 cut(s)	17, 105, 437, 527
TseFI	GTSAC	1 cut(s)	706
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	706
TspDTI	ATGAA	2 cut(s)	123, 326
XapI	RAATTY	1 cut(s)	597
XceI	RCATGY	1 cut(s)	357
XspI	CTAG	2 cut(s)	237, 724
ZrmI	AGTACT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.