Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

25921978 .. 25922745

Gene Structure 768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1200100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACTAGAACGAAAGTGAAACTGACCTACATCAGCAACGACTCGGCGCGAAAGGCCACGTTCAAGAAGAGAAAGAAGGGTTTGATGAAGAAGGTGAGTGAACTCAGCACCCTTTGTGATGTTAAGGCGTGCGCGATTATTTACAGCCCGTATGACTCCCAGCCGGAGCTCTGGCCATCGCCGTTGGGAGTCCAGCTGGTTCTCGCACAGTTCAAGACCATGCCGGAGATGGAGCAGAGCAAAAAAATGGTGAACCAAGAGAGTTTCCTGCGGCAGCGGATTACCAAGGCCAACGAGCAATTGAAGAAACAGAGGAAGGAGAACCGCGAGAAGGAGATGACGAGAGTGATGTTCCAGAGTCTGATGGGGAAGTCCCAGCTCCACGGTTTGAGCATGGTTGATTTGAACGATTTGGGGTGGCTGATTGACCAGAATTTGAAGGAGATCGACAACCGGATGAAGAATCTGAATGAACAGGATTCTAAGAGCCAAGTGCAACTACAACCAACGGCGCTGCCTGTAGCTGCCGCAACTGTGGCGGAGTGTGGAGTGGAGAGGCAGCAGGGTTTTGAGCTTAACAATAATGTGGGCACGGCGGTTCAAAGGCAGCAGCAGCCGTTTTTCATGGACATGATGAACGTCCCACAAGATCATCAGCAGCAGCAAATGGTAGGGATTGGTGGTGGATACGAGATGAATATGCTGCCGTTTGCGGCGGATCAGAGCCAAATTAATGCTATTTGGTCCAATAGTTCATTTTACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

256

Amino Acids

29.15

Weight (kDa)

9.25

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 51	3e-19	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	49, 134, 327
AciI	CCGC	8 cut(s)	271, 277, 325, 528, 539, 596, 713, 716
AclWI	GGATC	1 cut(s)	726
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	6 cut(s)	64, 214, 304, 406, 439, 602
AluBI	AGCT	5 cut(s)	169, 196, 379, 524, 574
AluI	AGCT	5 cut(s)	169, 196, 379, 524, 574
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	726
AlwNI	CAGNNNCTG	1 cut(s)	361
AoxI	GGCC	3 cut(s)	54, 173, 288
ApoI	RAATTY	1 cut(s)	433
AseI	ATTAAT	1 cut(s)	732
AspLEI	GCGC	3 cut(s)	49, 134, 514
AspS9I	GGNCC	1 cut(s)	744
AsuHPI	GGTGA	2 cut(s)	106, 262
AvaII	GGWCC	1 cut(s)	744
BaeGI	GKGCMC	1 cut(s)	593
BalI	TGGCCA	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	3 cut(s)	184, 223, 358
BceAI	ACGGC	5 cut(s)	166, 525, 601, 609, 691
BciVI	GTATCC	1 cut(s)	680
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	519
BfoI	RGCGCY	1 cut(s)	515
BfuI	GTATCC	1 cut(s)	680
Bme18I	GGWCC	1 cut(s)	744
BmgT120I	GGNCC	1 cut(s)	744
BsaJI	CCNNGG	2 cut(s)	285, 382
BsaWI	WCCGGW	1 cut(s)	453
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
BseDI	CCNNGG	2 cut(s)	285, 382
BseGI	GGATG	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	118
BseSI	GKGCMC	1 cut(s)	593
BseYI	CCCAGC	2 cut(s)	159, 375
Bsh1236I	CGCG	3 cut(s)	49, 134, 327
BshFI	GGCC	3 cut(s)	56, 175, 290
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	3 cut(s)	164, 224, 454
BslFI	GGGAC	2 cut(s)	358, 626
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmFI	GGGAC	2 cut(s)	358, 626
BsnI	GGCC	3 cut(s)	56, 175, 290
Bsp1286I	GDGCHC	2 cut(s)	171, 593
Bsp143I	GATC	3 cut(s)	444, 649, 718
BspACI	CCGC	8 cut(s)	271, 277, 325, 528, 539, 596, 713, 716
BspANI	GGCC	3 cut(s)	56, 175, 290
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	3 cut(s)	49, 134, 327
BspPI	GGATC	1 cut(s)	726
BssECI	CCNNGG	2 cut(s)	285, 382
BssMI	GATC	3 cut(s)	444, 649, 718
BssT1I	CCWWGG	1 cut(s)	285
Bst4CI	ACNGT	3 cut(s)	210, 386, 535
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	104, 483
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	462
BstFNI	CGCG	3 cut(s)	49, 134, 327
BstH2I	RGCGCY	1 cut(s)	515
BstHHI	GCGC	3 cut(s)	49, 134, 514
BstKTI	GATC	3 cut(s)	447, 652, 721
BstMBI	GATC	3 cut(s)	444, 649, 718
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 536, 613
BstSFI	CTRYAG	1 cut(s)	519
BstSLI	GKGCMC	1 cut(s)	593
BstUI	CGCG	3 cut(s)	49, 134, 327
BsuI	GTATCC	1 cut(s)	680
BsuRI	GGCC	3 cut(s)	56, 175, 290
BtgI	CCRYGG	1 cut(s)	382
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	361
CfoI	GCGC	3 cut(s)	49, 134, 514
Cfr13I	GGNCC	1 cut(s)	744
CviAII	CATG	4 cut(s)	220, 394, 625, 631
DdeI	CTNAG	2 cut(s)	104, 483
DpnI	GATC	3 cut(s)	446, 651, 720
DpnII	GATC	3 cut(s)	444, 649, 718
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
EciI	GGCGGA	2 cut(s)	554, 731
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	744
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	4 cut(s)	223, 397, 628, 634
FaiI	YATR	6 cut(s)	153, 221, 395, 626, 632, 701
FaqI	GGGAC	2 cut(s)	358, 626
FatI	CATG	4 cut(s)	219, 393, 624, 630
FokI	GGATG	1 cut(s)	469
FriOI	GRGCYC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	3 cut(s)	48, 133, 513
GsaI	CCCAGC	2 cut(s)	163, 379
HaeII	RGCGCY	1 cut(s)	515
HaeIII	GGCC	3 cut(s)	56, 175, 290
HapII	CCGG	3 cut(s)	164, 224, 454
HhaI	GCGC	3 cut(s)	49, 134, 514
Hin1II	CATG	4 cut(s)	223, 397, 628, 634
Hin6I	GCGC	3 cut(s)	47, 132, 512
HinP1I	GCGC	3 cut(s)	47, 132, 512
HinfI	GANTC	6 cut(s)	41, 155, 189, 358, 463, 479
HpaII	CCGG	3 cut(s)	164, 224, 454
HphI	GGTGA	2 cut(s)	106, 262
Hpy166II	GTNNAC	2 cut(s)	101, 253
Hpy188I	TCNGA	3 cut(s)	363, 468, 723
Hpy188III	TCNNGA	3 cut(s)	64, 214, 355
Hpy8I	GTNNAC	2 cut(s)	101, 253
HpyAV	CCTTC	5 cut(s)	70, 85, 310, 325, 433
HpyCH4III	ACNGT	3 cut(s)	210, 386, 535
HpyCH4IV	ACGT	2 cut(s)	59, 639
HpyCH4V	TGCA	1 cut(s)	496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 536, 613
HpyF3I	CTNAG	2 cut(s)	104, 483
HpySE526I	ACGT	2 cut(s)	59, 639
Hsp92II	CATG	4 cut(s)	223, 397, 628, 634
HspAI	GCGC	3 cut(s)	47, 132, 512
Kzo9I	GATC	3 cut(s)	444, 649, 718
LmnI	GCTCC	3 cut(s)	166, 232, 384
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	2 cut(s)	59, 639
MalI	GATC	3 cut(s)	446, 651, 720
MboI	GATC	3 cut(s)	444, 649, 718
MboII	GAAGA	4 cut(s)	79, 100, 316, 472
MfeI	CAATTG	1 cut(s)	299
MhlI	GDGCHC	2 cut(s)	171, 593
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	3 cut(s)	299, 433, 729
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	4 cut(s)	35, 149, 198, 367
MnlI	CCTC	2 cut(s)	306, 549
Mox20I	TGGCCA	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	175
MseI	TTAA	3 cut(s)	123, 576, 732
MslI	CAYNNNNRTG	1 cut(s)	629
Msp20I	TGGCCA	1 cut(s)	175
MspA1I	CMGCKG	2 cut(s)	196, 277
MspI	CCGG	3 cut(s)	164, 224, 454
MunI	CAATTG	1 cut(s)	299
MvnI	CGCG	3 cut(s)	49, 134, 327
MwoI	GCNNNNNNNGC	3 cut(s)	53, 536, 613
NdeII	GATC	3 cut(s)	444, 649, 718
NlaIII	CATG	4 cut(s)	223, 397, 628, 634
NmeAIII	GCCGAG	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	463, 479
PleI	GAGTC	4 cut(s)	35, 149, 197, 366
PpsI	GAGTC	4 cut(s)	35, 149, 197, 366
PshBI	ATTAAT	1 cut(s)	732
Psp124BI	GAGCTC	1 cut(s)	171
PspFI	CCCAGC	2 cut(s)	159, 375
PspPI	GGNCC	1 cut(s)	744
PstNI	CAGNNNCTG	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	629
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	123, 576, 732
Sau3AI	GATC	3 cut(s)	444, 649, 718
Sau96I	GGNCC	1 cut(s)	744
SchI	GAGTC	4 cut(s)	35, 149, 198, 367
SduI	GDGCHC	2 cut(s)	171, 593
SetI	ASST	9 cut(s)	29, 62, 96, 171, 198, 381, 526, 576, 642
SfcI	CTRYAG	1 cut(s)	519
SinI	GGWCC	1 cut(s)	744
SmiMI	CAYNNNNRTG	1 cut(s)	629
Sse9I	AATT	3 cut(s)	299, 433, 729
SsiI	CCGC	8 cut(s)	271, 277, 325, 528, 539, 596, 713, 716
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	3 cut(s)	210, 386, 535
TaiI	ACGT	2 cut(s)	62, 642
TaqI	TCGA	1 cut(s)	447
TasI	AATT	3 cut(s)	299, 433, 729
TauI	GCSGC	3 cut(s)	274, 530, 716
TfiI	GAWTC	2 cut(s)	463, 479
Tru1I	TTAA	3 cut(s)	123, 576, 732
Tru9I	TTAA	3 cut(s)	123, 576, 732
TspDTI	ATGAA	7 cut(s)	101, 473, 486, 613, 650, 710, 744
VpaK11BI	GGWCC	1 cut(s)	744
VspI	ATTAAT	1 cut(s)	732
XapI	RAATTY	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.