Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000146.1

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

100818 .. 101399

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000146.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggctagaagaaaggtgagactgcactgtattgccaatgagagttcccgaccaatgacatttagaaaaagaaagaagggtcttctgaagaaggagggagagataaccactctctgtgacatcaaggctgcggtgatcatctacatcccctttgactctgagtcagaggtgttcccaaggcatctagaagtccacgaactactgacgaagttccgggatacgccacaaatggagaagacaagaatgatggtcgaccaggagacattcttactacagaatcgacaaagtccgggagcaaatcagaaagaaaaaagagacaaccgagaaaaagagatcactcaagtcatgttcagttgtttgaaggggagaactctctttgacctgaacatgatggatctggatgacctcaaatttatcattgaacgcaacttcagggagcttggaattaagcaacgggttgccgatgagcagaagcaggaggaaaaccaggagaaccagctcaaccaggtggaagctgcggtggagctcggcctgacgaggaggagtgcatttggggaaggaaccagtagaggcgtgaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

193

Amino Acids

22.6

Weight (kDa)

9.15

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	2 cut(s)	131, 518
AclWI	GGATC	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	410
AcuI	CTGAAG	2 cut(s)	107, 415
AgsI	TTSAA	2 cut(s)	361, 422
AhdI	GACNNNNNGTC	1 cut(s)	160
AjnI	CCWGG	3 cut(s)	255, 486, 504
AluBI	AGCT	4 cut(s)	439, 499, 515, 526
AluI	AGCT	4 cut(s)	439, 499, 515, 526
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	3 cut(s)	13, 254, 309
AlwI	GGATC	1 cut(s)	402
AoxI	GGCC	1 cut(s)	529
ApeKI	GCWGC	2 cut(s)	128, 515
ApoI	RAATTY	1 cut(s)	410
AsuC2I	CCSGG	2 cut(s)	215, 291
AsuHPI	GGTGA	2 cut(s)	28, 145
BanII	GRGCYC	1 cut(s)	528
BbsI	GAAGAC	2 cut(s)	74, 242
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	2 cut(s)	115, 502
BccI	CCATC	2 cut(s)	241, 385
BciT130I	CCWGG	3 cut(s)	257, 488, 506
BciVI	GTATCC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	135
BcnI	CCSGG	2 cut(s)	215, 291
BcoDI	GTCTC	3 cut(s)	13, 254, 309
BfaI	CTAG	2 cut(s)	6, 185
BfmI	CTRYAG	1 cut(s)	272
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	129, 516
BlsI	GCNGC	2 cut(s)	130, 517
Bme1390I	CCNGG	5 cut(s)	215, 257, 291, 488, 506
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	5 cut(s)	215, 257, 291, 488, 506
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	2 cut(s)	74, 242
BpuEI	CTTGAG	1 cut(s)	324
BpuMI	CCSGG	2 cut(s)	215, 291
BsaJI	CCNNGG	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	564
BseBI	CCWGG	3 cut(s)	257, 488, 506
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	2 cut(s)	144, 406
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	564
BseRI	GAGGAG	2 cut(s)	553, 556
BseXI	GCAGC	2 cut(s)	115, 502
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	531
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	2 cut(s)	214, 290
BsmAI	GTCTC	3 cut(s)	13, 254, 309
BsnI	GGCC	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp143I	GATC	3 cut(s)	135, 333, 394
BspACI	CCGC	2 cut(s)	131, 518
BspANI	GGCC	1 cut(s)	531
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	562
BspPI	GGATC	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	564
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	3 cut(s)	135, 333, 394
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	3 cut(s)	257, 488, 506
Bst4CI	ACNGT	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	144, 406
BstKTI	GATC	3 cut(s)	138, 336, 397
BstMAI	GTCTC	3 cut(s)	13, 254, 309
BstMBI	GATC	3 cut(s)	135, 333, 394
BstNI	CCWGG	3 cut(s)	257, 488, 506
BstSCI	CCNGG	5 cut(s)	213, 255, 289, 486, 504
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	2 cut(s)	115, 502
BstV2I	GAAGAC	2 cut(s)	74, 242
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	531
BtsCI	GGATG	2 cut(s)	144, 406
BtsIMutI	CAGTG	1 cut(s)	25
CsiI	ACCWGGT	1 cut(s)	504
CviAII	CATG	2 cut(s)	346, 388
CviJI	RGCY	7 cut(s)	5, 128, 439, 499, 515, 526, 531
CviKI_1	RGCY	7 cut(s)	5, 128, 439, 499, 515, 526, 531
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	3 cut(s)	137, 335, 396
DpnII	GATC	3 cut(s)	135, 333, 394
DriI	GACNNNNNGTC	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	526
Eco130I	CCWWGG	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	528
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	2 cut(s)	107, 415
EcoICRI	GAGCTC	1 cut(s)	526
EcoRII	CCWGG	3 cut(s)	255, 486, 504
EcoT14I	CCWWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	2 cut(s)	349, 391
FaiI	YATR	2 cut(s)	347, 389
FatI	CATG	2 cut(s)	345, 387
FbaI	TGATCA	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	129, 516
FokI	GGATG	2 cut(s)	131, 413
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	2 cut(s)	129, 516
FspBI	CTAG	2 cut(s)	6, 185
GluI	GCNGC	2 cut(s)	129, 516
HaeIII	GGCC	1 cut(s)	531
HapII	CCGG	2 cut(s)	214, 290
Hin1II	CATG	2 cut(s)	349, 391
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	3 cut(s)	155, 161, 277
HpaII	CCGG	2 cut(s)	214, 290
HphI	GGTGA	2 cut(s)	28, 145
Hpy166II	GTNNAC	2 cut(s)	193, 253
Hpy188I	TCNGA	4 cut(s)	87, 160, 166, 303
Hpy188III	TCNNGA	3 cut(s)	48, 185, 398
Hpy8I	GTNNAC	2 cut(s)	193, 253
HpyAV	CCTTC	4 cut(s)	70, 85, 355, 551
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	2 cut(s)	25, 548
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	349, 391
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	135, 333, 394
LmnI	GCTCC	3 cut(s)	293, 436, 523
Lsp1109I	GCAGC	2 cut(s)	115, 502
LweI	GCATC	1 cut(s)	190
MabI	ACCWGGT	1 cut(s)	504
MaeI	CTAG	2 cut(s)	6, 185
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	3 cut(s)	137, 335, 396
MboI	GATC	3 cut(s)	135, 333, 394
MboII	GAAGA	4 cut(s)	21, 74, 100, 247
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	528
MluCI	AATT	2 cut(s)	410, 444
MlyI	GAGTC	2 cut(s)	149, 170
MnlI	CCTC	7 cut(s)	88, 160, 416, 472, 531, 534, 563
MseI	TTAA	1 cut(s)	447
MspI	CCGG	2 cut(s)	214, 290
MspR9I	CCNGG	5 cut(s)	215, 257, 291, 488, 506
MvaI	CCWGG	3 cut(s)	257, 488, 506
NciI	CCSGG	2 cut(s)	215, 291
NdeII	GATC	3 cut(s)	135, 333, 394
NlaIII	CATG	2 cut(s)	349, 391
NlaIV	GGNNCC	1 cut(s)	562
NmeAIII	GCCGAG	1 cut(s)	507
NmuCI	GTSAC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	277
PflFI	GACNNNGTC	1 cut(s)	285
PfoI	TCCNGGA	2 cut(s)	213, 289
PkrI	GCNGC	2 cut(s)	130, 517
PleI	GAGTC	2 cut(s)	149, 169
PpsI	GAGTC	2 cut(s)	149, 169
Psp124BI	GAGCTC	1 cut(s)	528
Psp6I	CCWGG	3 cut(s)	255, 486, 504
PspGI	CCWGG	3 cut(s)	255, 486, 504
PspN4I	GGNNCC	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	394
PsyI	GACNNNGTC	1 cut(s)	285
SacI	GAGCTC	1 cut(s)	528
SalI	GTCGAC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	2 cut(s)	129, 516
Sau3AI	GATC	3 cut(s)	135, 333, 394
SchI	GAGTC	2 cut(s)	149, 170
ScrFI	CCNGG	5 cut(s)	215, 257, 291, 488, 506
SduI	GDGCHC	1 cut(s)	528
SetI	ASST	9 cut(s)	18, 171, 384, 408, 441, 501, 510, 517, 528
SexAI	ACCWGGT	1 cut(s)	504
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	2 cut(s)	410, 444
SsiI	CCGC	2 cut(s)	131, 518
SspMI	CTAG	2 cut(s)	6, 185
SstI	GAGCTC	1 cut(s)	528
StyD4I	CCNGG	5 cut(s)	213, 255, 289, 486, 504
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	2 cut(s)	252, 280
TasI	AATT	2 cut(s)	410, 444
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	32
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	2 cut(s)	128, 515
Tsp45I	GTSAC	1 cut(s)	116
TspRI	CASTG	1 cut(s)	32
Tth111I	GACNNNGTC	1 cut(s)	285
XapI	RAATTY	1 cut(s)	410
XbaI	TCTAGA	1 cut(s)	184
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	2 cut(s)	6, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.