Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

7644256 .. 7645143

Gene Structure 888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG044400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGACTAGAAAGAAGGTGAAACTTGCCTACATCACTAATGATAGTGCTCGAAAAGCAACATATAAGAAAAGGAAGAAGGGTCTTATGAAAAAGGTGAGCGAACTCACCACCCTTTGTGACATTGATGCTTGTGCTATTATCTACAGCCCCTATGACTCCCAGCCTGAAATTTGGCCTTCTCCCTTAGGAGTCCAACGTGTGCTTGCGCAGTTCAAGACCATGCCTGAAATGGAGCAAAGCAAGAAGATGGTGAATCAAGAGAGTTTCTTGAGGCAAAGAATCAACAAGGCTCAGGAACAACTCAAGAAGCAAAAGAAAGACAACCGAGAAAAGGAGATGGCTCGTGTGATGTTCCAAAGCCTAACTGGAAAGTCTCTCCAGGGCTTGACACTGTCAGACCTAACTGATCTTGGCTGGGTCATTGACCAGCACTTGAAGGAGTTACATCTCAGGATGAAGAACATTAAGGAGGAGGTTGTGAAGAGCCAGAACCAAGTGAAAGGAGCACAAGGGGTGTCATCTGCTGTAGCAGATCATAGAATGGTGGTAATGAAGAGTAATATAGAGGACAGTGGCAGCAACATGGCAATGAAGAGTGGTGAAGAGGGCAGTAGCATGCAGCATGCAGCCCTTGACAGGCAAGCTTTTGATCACATGCATAACATGGAGGCAATGCAGCTCCAAATGATGCATATGGCAGCTCAGAAGCAGCAAAATCACTGGTTCATGGATATGATGAATGCGCCGCCACAACCACCACTGCCACATCCAGATAATCATGAGCATATGGCGTTTACCAGTGAGGATATGATGCTTCCCTTCGCGGATCATAACCACAGCACTATGTGGCCGAATCCTCCTCCTGCTGGCGGCTTTAATTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

295

Amino Acids

33.76

Weight (kDa)

9.14

Isoelectric Point (pI)

57.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 51	9.1e-18	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	207
AccII	CGCG	1 cut(s)	824
AciI	CCGC	3 cut(s)	746, 824, 870
AclWI	GGATC	1 cut(s)	834
AcoI	YGGCCR	1 cut(s)	848
AcsI	RAATTY	1 cut(s)	168
AdeI	CACNNNGTG	1 cut(s)	846
AfiI	CCNNNNNNNGG	4 cut(s)	331, 636, 866, 869
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	2 cut(s)	214, 436
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	3 cut(s)	644, 679, 701
AluI	AGCT	3 cut(s)	644, 679, 701
Alw21I	GWGCWC	2 cut(s)	49, 508
Alw26I	GTCTC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	834
AoxI	GGCC	2 cut(s)	173, 848
ApeKI	GCWGC	6 cut(s)	576, 619, 626, 676, 698, 709
ApoI	RAATTY	1 cut(s)	168
AspLEI	GCGC	2 cut(s)	208, 745
AsuHPI	GGTGA	5 cut(s)	28, 97, 106, 262, 611
AxyI	CCTNAGG	1 cut(s)	184
BauI	CACGAG	1 cut(s)	342
Bbv12I	GWGCWC	2 cut(s)	49, 508
BbvI	GCAGC	6 cut(s)	588, 631, 638, 688, 710, 721
BccI	CCATC	2 cut(s)	241, 331
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	1 cut(s)	649
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	2 cut(s)	142, 525
BisI	GCNGC	8 cut(s)	577, 620, 627, 677, 699, 710, 746, 871
BlsI	GCNGC	8 cut(s)	578, 621, 628, 678, 700, 711, 747, 872
Bme1390I	CCNGG	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	3 cut(s)	115, 678, 801
BpmI	CTGGAG	1 cut(s)	362
Bpu10I	CCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	2 cut(s)	287, 289
BsaJI	CCNNGG	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	4 cut(s)	331, 636, 866, 869
Bse1I	ACTGG	3 cut(s)	370, 725, 798
Bse21I	CCTNAGG	1 cut(s)	184
Bse3DI	GCAATG	2 cut(s)	594, 678
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	2 cut(s)	459, 766
BseLI	CCNNNNNNNGG	4 cut(s)	331, 636, 866, 869
BseMI	GCAATG	2 cut(s)	594, 678
BseMII	CTCAG	3 cut(s)	305, 463, 716
BseNI	ACTGG	3 cut(s)	370, 725, 798
BseRI	GAGGAG	2 cut(s)	485, 849
BseXI	GCAGC	6 cut(s)	588, 631, 638, 688, 710, 721
BseYI	CCCAGC	2 cut(s)	159, 414
Bsh1236I	CGCG	1 cut(s)	824
BshFI	GGCC	2 cut(s)	175, 850
BsiHKAI	GWGCWC	2 cut(s)	49, 508
BslI	CCNNNNNNNGG	4 cut(s)	331, 636, 866, 869
BsmAI	GTCTC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	745
BsnI	GGCC	2 cut(s)	175, 850
Bsp1286I	GDGCHC	2 cut(s)	49, 508
Bsp143I	GATC	4 cut(s)	406, 532, 649, 826
BspACI	CCGC	3 cut(s)	746, 824, 870
BspANI	GGCC	2 cut(s)	175, 850
BspCNI	CTCAG	3 cut(s)	304, 462, 715
BspFNI	CGCG	1 cut(s)	824
BspHI	TCATGA	1 cut(s)	778
BspPI	GGATC	1 cut(s)	834
BspQI	GCTCTTC	1 cut(s)	476
BsrDI	GCAATG	2 cut(s)	594, 678
BsrI	ACTGG	3 cut(s)	370, 725, 798
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	4 cut(s)	406, 532, 649, 826
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	393, 572
Bst6I	CTCTTC	4 cut(s)	476, 548, 587, 597
BstC8I	GCNNGC	5 cut(s)	204, 617, 624, 642, 868
BstDEI	CTNAG	4 cut(s)	184, 291, 449, 702
BstF5I	GGATG	2 cut(s)	459, 766
BstFNI	CGCG	1 cut(s)	824
BstHHI	GCGC	2 cut(s)	208, 745
BstKTI	GATC	4 cut(s)	409, 535, 652, 829
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	4 cut(s)	406, 532, 649, 826
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	3 cut(s)	619, 626, 658
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	2 cut(s)	142, 525
BstUI	CGCG	1 cut(s)	824
BstV1I	GCAGC	6 cut(s)	588, 631, 638, 688, 710, 721
Bsu36I	CCTNAGG	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	175, 850
BtsCI	GGATG	2 cut(s)	459, 766
BtsI	GCAGTG	1 cut(s)	758
BtsIMutI	CAGTG	5 cut(s)	389, 577, 718, 758, 805
Cac8I	GCNNGC	5 cut(s)	204, 617, 624, 642, 868
CciI	TCATGA	1 cut(s)	778
CfoI	GCGC	2 cut(s)	208, 745
CviAII	CATG	8 cut(s)	220, 583, 616, 623, 655, 664, 727, 779
DdeI	CTNAG	4 cut(s)	184, 291, 449, 702
DpnI	GATC	4 cut(s)	408, 534, 651, 828
DpnII	GATC	4 cut(s)	406, 532, 649, 826
DraIII	CACNNNGTG	1 cut(s)	846
EaeI	YGGCCR	1 cut(s)	848
Eam1104I	CTCTTC	4 cut(s)	476, 548, 587, 597
EarI	CTCTTC	4 cut(s)	476, 548, 587, 597
Eco81I	CCTNAGG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	378
EcoT22I	ATGCAT	2 cut(s)	660, 693
FaeI	CATG	8 cut(s)	223, 586, 619, 626, 658, 667, 730, 782
FatI	CATG	8 cut(s)	219, 582, 615, 622, 654, 663, 726, 778
FauNDI	CATATG	2 cut(s)	693, 786
FbaI	TGATCA	1 cut(s)	649
Fnu4HI	GCNGC	8 cut(s)	577, 620, 627, 677, 699, 710, 746, 871
FokI	GGATG	2 cut(s)	466, 753
Fsp4HI	GCNGC	8 cut(s)	577, 620, 627, 677, 699, 710, 746, 871
FspBI	CTAG	1 cut(s)	6
FspI	TGCGCA	1 cut(s)	207
GlaI	GCGC	2 cut(s)	207, 744
GluI	GCNGC	8 cut(s)	577, 620, 627, 677, 699, 710, 746, 871
GsaI	CCCAGC	2 cut(s)	163, 418
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	175, 850
HhaI	GCGC	2 cut(s)	208, 745
Hin1II	CATG	8 cut(s)	223, 586, 619, 626, 658, 667, 730, 782
Hin6I	GCGC	2 cut(s)	206, 743
HinP1I	GCGC	2 cut(s)	206, 743
HindIII	AAGCTT	1 cut(s)	642
HinfI	GANTC	5 cut(s)	155, 189, 253, 279, 853
HphI	GGTGA	5 cut(s)	28, 97, 106, 262, 611
Hpy166II	GTNNAC	1 cut(s)	795
Hpy188I	TCNGA	2 cut(s)	397, 705
Hpy188III	TCNNGA	8 cut(s)	214, 257, 268, 293, 304, 451, 770, 779
Hpy8I	GTNNAC	1 cut(s)	795
HpyAV	CCTTC	5 cut(s)	7, 70, 186, 430, 829
HpyCH4III	ACNGT	2 cut(s)	393, 572
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	5 cut(s)	619, 626, 658, 676, 691
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	4 cut(s)	184, 291, 449, 702
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	8 cut(s)	223, 586, 619, 626, 658, 667, 730, 782
HspAI	GCGC	2 cut(s)	206, 743
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	4 cut(s)	406, 532, 649, 826
LguI	GCTCTTC	1 cut(s)	476
LmnI	GCTCC	3 cut(s)	232, 503, 684
Lsp1109I	GCAGC	6 cut(s)	588, 631, 638, 688, 710, 721
LweI	GCATC	3 cut(s)	115, 678, 801
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	2 cut(s)	116, 441
MalI	GATC	4 cut(s)	408, 534, 651, 828
MboI	GATC	4 cut(s)	406, 532, 649, 826
MboII	GAAGA	7 cut(s)	85, 256, 469, 493, 565, 604, 614
MhlI	GDGCHC	2 cut(s)	49, 508
MluCI	AATT	2 cut(s)	168, 877
MlyI	GAGTC	2 cut(s)	149, 198
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	9 cut(s)	264, 463, 466, 559, 598, 661, 796, 867, 870
Mph1103I	ATGCAT	2 cut(s)	660, 693
MseI	TTAA	2 cut(s)	465, 876
MslI	CAYNNNNRTG	2 cut(s)	587, 731
MspR9I	CCNGG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	745
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	824
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeI	CATATG	2 cut(s)	693, 786
NdeII	GATC	4 cut(s)	406, 532, 649, 826
NlaIII	CATG	8 cut(s)	223, 586, 619, 626, 658, 667, 730, 782
NmuCI	GTSAC	1 cut(s)	116
NsbI	TGCGCA	1 cut(s)	207
NsiI	ATGCAT	2 cut(s)	660, 693
NspI	RCATGY	3 cut(s)	619, 626, 658
PaeI	GCATGC	2 cut(s)	619, 626
PagI	TCATGA	1 cut(s)	778
PciSI	GCTCTTC	1 cut(s)	476
PctI	GAATGC	1 cut(s)	745
PfeI	GAWTC	3 cut(s)	253, 279, 853
PflFI	GACNNNGTC	1 cut(s)	391
PkrI	GCNGC	8 cut(s)	578, 621, 628, 678, 700, 711, 747, 872
PleI	GAGTC	2 cut(s)	149, 197
PpsI	GAGTC	2 cut(s)	149, 197
Psp6I	CCWGG	1 cut(s)	378
PspFI	CCCAGC	2 cut(s)	159, 414
PspGI	CCWGG	1 cut(s)	378
PsyI	GACNNNGTC	1 cut(s)	391
RseI	CAYNNNNRTG	2 cut(s)	587, 731
SapI	GCTCTTC	1 cut(s)	476
SaqAI	TTAA	2 cut(s)	465, 876
SatI	GCNGC	8 cut(s)	577, 620, 627, 677, 699, 710, 746, 871
Sau3AI	GATC	4 cut(s)	406, 532, 649, 826
SchI	GAGTC	2 cut(s)	149, 198
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	2 cut(s)	49, 508
SetI	ASST	8 cut(s)	18, 96, 199, 402, 477, 646, 681, 703
SfaNI	GCATC	3 cut(s)	115, 678, 801
SfcI	CTRYAG	2 cut(s)	142, 525
SmiMI	CAYNNNNRTG	2 cut(s)	587, 731
SmlI	CTYRAG	2 cut(s)	268, 302
SmoI	CTYRAG	2 cut(s)	268, 302
SphI	GCATGC	2 cut(s)	619, 626
Sse9I	AATT	2 cut(s)	168, 877
SsiI	CCGC	3 cut(s)	746, 824, 870
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	393, 572
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	49
TasI	AATT	2 cut(s)	168, 877
TauI	GCSGC	2 cut(s)	748, 873
TfiI	GAWTC	3 cut(s)	253, 279, 853
Tru1I	TTAA	2 cut(s)	465, 876
Tru9I	TTAA	2 cut(s)	465, 876
TscAI	CASTG	5 cut(s)	396, 577, 725, 765, 805
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	6 cut(s)	576, 619, 626, 676, 698, 709
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	6 cut(s)	101, 470, 566, 605, 715, 752
TspRI	CASTG	5 cut(s)	396, 577, 725, 765, 805
Tth111I	GACNNNGTC	1 cut(s)	391
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	3 cut(s)	619, 626, 658
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 362
XspI	CTAG	1 cut(s)	6
Zsp2I	ATGCAT	2 cut(s)	660, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.