Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

6958827 .. 6959714

Gene Structure 888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G007550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGACTAGAAAGAAGGTGAAACTTACCTACATCACTAATGATAGTGCTCGAAAAGCAACATATAAGAAAAGGAAGAAGGGTCTGATGAAAAAGGTGAGTGAACTCACCACCCTTTGTGACATTGATGCTTGTGCTATTATCTACAGCCCTTATGACTCCCAGCCTGAAATTTGGCCTTCCCCCTTGGGAGTCCAACGTGTGCTTGCGCAGTTCAAGACCATGCCTGAAATGGAGCAAAGCAAGAAGATGGTGAATCAGGAGACTTTCCTGAGGCAACGAATCAACAAGGCTCAGGAACAGCTTAAGAAGCAAAAGAAAGACAACCGGGAAAAGGAGATGGCTCGTGTGATGTTCCAAAGCCTAACCGGAAAGTCCCTCCGGGGCTTGACACTGTCAGACCTGACTGATCTCGGATGGGTCATTGACCAACACCTGCAGGAGTTACATCTCAGGATGAAGAACATTAAGGAGGAGGCTGTGAAGAGCCAGAACCAAGTGCAAGGAGCACAAGGGGTGTCGGCTGCTGCAACGGAACATAGAATGGCAGTGATGAAGAGTAACGGAGAGGGCAGCAGCAGCAACATGGCGATGAAGACTGGTGAAGAGAGCAGCAACATGCAGCATGCAGCCCTTGACAGGCAAGTTTTTGATCACATGCATAACATGGAGGCAATGCAGCTCCAAATGATGCAGATGGCAGCTCAGAAGCAGCAAAACCCTTGGTTCATGGACATGATGAATGCGCCACCACCAACACCACTGCCACATCCAGATCATCATCAGCATATGGGGTTTACCGGGGAGGATATGATGGTTCCTTTCGCGGATCATAACCACAATACTATGTGGCCAAATCCTCCTCCTGCTAGCGCCTTTAATTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

295

Amino Acids

33.75

Weight (kDa)

9.27

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 51	9.1e-18	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	441
Acc16I	TGCGCA	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	441
AccII	CGCG	1 cut(s)	824
AciI	CCGC	1 cut(s)	824
AclWI	GGATC	1 cut(s)	834
AcoI	YGGCCR	1 cut(s)	848
AcsI	RAATTY	1 cut(s)	168
AfiI	CCNNNNNNNGG	2 cut(s)	331, 636
AflII	CTTAAG	1 cut(s)	302
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	3 cut(s)	301, 679, 701
AluI	AGCT	3 cut(s)	301, 679, 701
Alw21I	GWGCWC	2 cut(s)	49, 508
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	834
AoxI	GGCC	2 cut(s)	173, 848
ApoI	RAATTY	1 cut(s)	168
AspLEI	GCGC	3 cut(s)	208, 745, 872
AsuC2I	CCSGG	3 cut(s)	326, 380, 799
AsuHPI	GGTGA	5 cut(s)	28, 97, 106, 262, 611
AsuNHI	GCTAGC	1 cut(s)	866
AxyI	CCTNAGG	1 cut(s)	269
BalI	TGGCCA	1 cut(s)	850
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	599
Bbv12I	GWGCWC	2 cut(s)	49, 508
BccI	CCATC	5 cut(s)	241, 331, 408, 688, 805
BclI	TGATCA	1 cut(s)	649
BcnI	CCSGG	3 cut(s)	326, 380, 799
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	2 cut(s)	6, 867
BfmI	CTRYAG	2 cut(s)	142, 434
BfoI	RGCGCY	1 cut(s)	873
BfrI	CTTAAG	1 cut(s)	302
BfuAI	ACCTGC	1 cut(s)	441
Bme1390I	CCNGG	3 cut(s)	326, 380, 799
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	3 cut(s)	326, 380, 799
BmsI	GCATC	2 cut(s)	115, 678
BmtI	GCTAGC	1 cut(s)	870
BpiI	GAAGAC	1 cut(s)	599
Bpu10I	CCTNAGC	1 cut(s)	291
BpuMI	CCSGG	3 cut(s)	326, 380, 799
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	4 cut(s)	183, 379, 719, 798
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 636
Bse1I	ACTGG	1 cut(s)	601
Bse21I	CCTNAGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	678
Bse8I	GATNNNNATC	1 cut(s)	777
BseDI	CCNNGG	4 cut(s)	183, 379, 719, 798
BseGI	GGATG	3 cut(s)	419, 459, 766
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	2 cut(s)	331, 636
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	4 cut(s)	260, 305, 463, 716
BseNI	ACTGG	1 cut(s)	601
BseRI	GAGGAG	2 cut(s)	485, 849
BseYI	CCCAGC	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	824
BshFI	GGCC	2 cut(s)	175, 850
BsiHKAI	GWGCWC	2 cut(s)	49, 508
BsiSI	CCGG	4 cut(s)	325, 366, 379, 798
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	331, 636
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	745
BsnI	GGCC	2 cut(s)	175, 850
Bsp1286I	GDGCHC	2 cut(s)	49, 508
Bsp143I	GATC	4 cut(s)	406, 649, 772, 826
BspACI	CCGC	1 cut(s)	824
BspANI	GGCC	2 cut(s)	175, 850
BspCNI	CTCAG	4 cut(s)	261, 304, 462, 715
BspFNI	CGCG	1 cut(s)	824
BspLI	GGNNCC	1 cut(s)	816
BspMAI	CTGCAG	1 cut(s)	438
BspMI	ACCTGC	1 cut(s)	441
BspOI	GCTAGC	1 cut(s)	870
BspPI	GGATC	1 cut(s)	834
BspQI	GCTCTTC	1 cut(s)	476
BspTI	CTTAAG	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	678
BsrI	ACTGG	1 cut(s)	601
BssECI	CCNNGG	4 cut(s)	183, 379, 719, 798
BssMI	GATC	4 cut(s)	406, 649, 772, 826
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	2 cut(s)	183, 719
Bst2BI	CACGAG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	393
Bst6I	CTCTTC	3 cut(s)	476, 548, 597
BstAFI	CTTAAG	1 cut(s)	302
BstC8I	GCNNGC	3 cut(s)	204, 624, 868
BstDEI	CTNAG	4 cut(s)	269, 291, 449, 702
BstF5I	GGATG	3 cut(s)	419, 459, 766
BstFNI	CGCG	1 cut(s)	824
BstH2I	RGCGCY	1 cut(s)	873
BstHHI	GCGC	3 cut(s)	208, 745, 872
BstKTI	GATC	4 cut(s)	409, 652, 775, 829
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	4 cut(s)	406, 649, 772, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 307, 576
BstNSI	RCATGY	3 cut(s)	619, 626, 658
BstSCI	CCNGG	3 cut(s)	324, 378, 797
BstSFI	CTRYAG	2 cut(s)	142, 434
BstUI	CGCG	1 cut(s)	824
BstV2I	GAAGAC	1 cut(s)	599
Bsu36I	CCTNAGG	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	175, 850
BtgZI	GCGATG	1 cut(s)	602
BtsCI	GGATG	3 cut(s)	419, 459, 766
BtsI	GCAGTG	2 cut(s)	552, 758
BtsIMutI	CAGTG	3 cut(s)	389, 552, 758
BveI	ACCTGC	1 cut(s)	441
Cac8I	GCNNGC	3 cut(s)	204, 624, 868
CfoI	GCGC	3 cut(s)	208, 745, 872
CviAII	CATG	8 cut(s)	220, 583, 616, 623, 655, 664, 727, 733
DdeI	CTNAG	4 cut(s)	269, 291, 449, 702
DpnI	GATC	4 cut(s)	408, 651, 774, 828
DpnII	GATC	4 cut(s)	406, 649, 772, 826
EaeI	YGGCCR	1 cut(s)	848
Eam1104I	CTCTTC	3 cut(s)	476, 548, 597
EarI	CTCTTC	3 cut(s)	476, 548, 597
Eco130I	CCWWGG	2 cut(s)	183, 719
Eco81I	CCTNAGG	1 cut(s)	269
EcoT14I	CCWWGG	2 cut(s)	183, 719
EcoT22I	ATGCAT	1 cut(s)	660
ErhI	CCWWGG	2 cut(s)	183, 719
FaeI	CATG	8 cut(s)	223, 586, 619, 626, 658, 667, 730, 736
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	8 cut(s)	219, 582, 615, 622, 654, 663, 726, 732
FauNDI	CATATG	1 cut(s)	786
FbaI	TGATCA	1 cut(s)	649
FokI	GGATG	3 cut(s)	426, 466, 753
FspBI	CTAG	2 cut(s)	6, 867
FspI	TGCGCA	1 cut(s)	207
GlaI	GCGC	3 cut(s)	207, 744, 871
GsaI	CCCAGC	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	873
HaeIII	GGCC	2 cut(s)	175, 850
HapII	CCGG	4 cut(s)	325, 366, 379, 798
HhaI	GCGC	3 cut(s)	208, 745, 872
Hin1II	CATG	8 cut(s)	223, 586, 619, 626, 658, 667, 730, 736
Hin6I	GCGC	3 cut(s)	206, 743, 870
HinP1I	GCGC	3 cut(s)	206, 743, 870
HinfI	GANTC	4 cut(s)	155, 189, 253, 279
HpaII	CCGG	4 cut(s)	325, 366, 379, 798
HphI	GGTGA	5 cut(s)	28, 97, 106, 262, 611
Hpy166II	GTNNAC	2 cut(s)	101, 795
Hpy188I	TCNGA	4 cut(s)	84, 397, 413, 705
Hpy188III	TCNNGA	6 cut(s)	214, 257, 268, 293, 451, 770
Hpy8I	GTNNAC	2 cut(s)	101, 795
HpyAV	CCTTC	3 cut(s)	7, 70, 186
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	8 cut(s)	436, 499, 527, 619, 626, 658, 676, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 307, 576
HpyF3I	CTNAG	4 cut(s)	269, 291, 449, 702
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	8 cut(s)	223, 586, 619, 626, 658, 667, 730, 736
HspAI	GCGC	3 cut(s)	206, 743, 870
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	4 cut(s)	406, 649, 772, 826
LguI	GCTCTTC	1 cut(s)	476
LmnI	GCTCC	3 cut(s)	232, 503, 684
LweI	GCATC	2 cut(s)	115, 678
MaeI	CTAG	2 cut(s)	6, 867
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	3 cut(s)	116, 441, 557
MalI	GATC	4 cut(s)	408, 651, 774, 828
MboI	GATC	4 cut(s)	406, 649, 772, 826
MboII	GAAGA	7 cut(s)	85, 256, 469, 493, 565, 604, 614
MhlI	GDGCHC	2 cut(s)	49, 508
MlsI	TGGCCA	1 cut(s)	850
MluCI	AATT	2 cut(s)	168, 877
MluNI	TGGCCA	1 cut(s)	850
MlyI	GAGTC	2 cut(s)	149, 198
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	9 cut(s)	264, 386, 463, 466, 559, 661, 796, 867, 870
Mox20I	TGGCCA	1 cut(s)	850
Mph1103I	ATGCAT	1 cut(s)	660
MscI	TGGCCA	1 cut(s)	850
MseI	TTAA	3 cut(s)	303, 465, 876
MslI	CAYNNNNRTG	2 cut(s)	587, 731
Msp20I	TGGCCA	1 cut(s)	850
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	4 cut(s)	325, 366, 379, 798
MspR9I	CCNGG	3 cut(s)	326, 380, 799
Mva1269I	GAATGC	1 cut(s)	745
MvnI	CGCG	1 cut(s)	824
MwoI	GCNNNNNNNGC	3 cut(s)	53, 307, 576
NciI	CCSGG	3 cut(s)	326, 380, 799
NdeI	CATATG	1 cut(s)	786
NdeII	GATC	4 cut(s)	406, 649, 772, 826
NheI	GCTAGC	1 cut(s)	866
NlaIII	CATG	8 cut(s)	223, 586, 619, 626, 658, 667, 730, 736
NlaIV	GGNNCC	1 cut(s)	816
NmuCI	GTSAC	1 cut(s)	116
NsbI	TGCGCA	1 cut(s)	207
NsiI	ATGCAT	1 cut(s)	660
NspI	RCATGY	3 cut(s)	619, 626, 658
PaeI	GCATGC	1 cut(s)	626
PaqCI	CACCTGC	1 cut(s)	441
PciSI	GCTCTTC	1 cut(s)	476
PctI	GAATGC	1 cut(s)	745
PfeI	GAWTC	2 cut(s)	253, 279
PflFI	GACNNNGTC	1 cut(s)	391
PleI	GAGTC	2 cut(s)	149, 197
PpsI	GAGTC	2 cut(s)	149, 197
PspFI	CCCAGC	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	816
PstI	CTGCAG	1 cut(s)	438
PsyI	GACNNNGTC	1 cut(s)	391
RseI	CAYNNNNRTG	2 cut(s)	587, 731
SapI	GCTCTTC	1 cut(s)	476
SaqAI	TTAA	3 cut(s)	303, 465, 876
Sau3AI	GATC	4 cut(s)	406, 649, 772, 826
SbfI	CCTGCAGG	1 cut(s)	438
SchI	GAGTC	2 cut(s)	149, 198
ScrFI	CCNGG	3 cut(s)	326, 380, 799
SdaI	CCTGCAGG	1 cut(s)	438
SduI	GDGCHC	2 cut(s)	49, 508
SetI	ASST	9 cut(s)	18, 29, 96, 199, 303, 402, 435, 681, 703
SfaNI	GCATC	2 cut(s)	115, 678
SfcI	CTRYAG	2 cut(s)	142, 434
SmiMI	CAYNNNNRTG	2 cut(s)	587, 731
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SphI	GCATGC	1 cut(s)	626
Sse8387I	CCTGCAGG	1 cut(s)	438
Sse9I	AATT	2 cut(s)	168, 877
SsiI	CCGC	1 cut(s)	824
SspMI	CTAG	2 cut(s)	6, 867
StyD4I	CCNGG	3 cut(s)	324, 378, 797
StyI	CCWWGG	2 cut(s)	183, 719
TaaI	ACNGT	1 cut(s)	393
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	49
TasI	AATT	2 cut(s)	168, 877
TfiI	GAWTC	2 cut(s)	253, 279
Tru1I	TTAA	3 cut(s)	303, 465, 876
Tru9I	TTAA	3 cut(s)	303, 465, 876
TscAI	CASTG	3 cut(s)	396, 552, 765
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	6 cut(s)	101, 470, 566, 605, 715, 752
TspGWI	ACGGA	2 cut(s)	545, 576
TspRI	CASTG	3 cut(s)	396, 552, 765
Tth111I	GACNNNGTC	1 cut(s)	391
Vha464I	CTTAAG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	3 cut(s)	619, 626, 658
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XspI	CTAG	2 cut(s)	6, 867
Zsp2I	ATGCAT	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.