Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

27525538 .. 27526779

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G303900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGACTAGAAAGAAGGTCAAGTTGGCCTACATAGCTAATGACTCAACCAGAAAAGCCACTTTCAAAAAAAGGAAGAGGGGCTTGATAAAAAAGATAAGTGAACTGAGCACACTCTGTGACGTTCCAGCGTGTGCCCTAATCTATAGCCAGTATGAGTCTCTCCCTGATATCTGGCCATCTCCTTCCGGCGTGCAGCGTGTTATCGCGCAATTCAGAAATATGCCGGAGATGGAACAAGGGCGGAAGATGTTCAACCAGGAGACCTTTCTCAGGCAGCGGATCGTGAAGTCCCACGAACAGCTCAAGAGGCTGAGGAAAGAGAACAGAGAAAAGGAGGTGTCGAGGGTGATGTTCCAGACCCTCACTGGTAGGCCTCTTCAGGGACTGAACATGATCGACCTGAACGACCTAGGATGGCTAATCGACCAGAATGTGAAGGAGCTTGGTGAGAAGATCAAGAGCAAGAGAGAGGAGCTGCTGGCTCAGAGAAATGAAGTCACAATGGCAGCACCAAATGCAGCAGCTTTGCCTGCTAGAGCTGGAGACCATGGCATGGACCTGAACATGCAGCAGCCAGCAATGGAGAACACCATGCAGAGGCCTCCATGGTTCTCAGATGTGATGACCCCGCAGGAGCCTATGGGGTCTGGTGCTGCTGGTGGCGATGAGGTGTTGCCCTTCGGAGATCAGAATCATCCTGCCTTTTGGCATAACAGTCCCTTTTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

244

Amino Acids

27.81

Weight (kDa)

9.54

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	553
AccII	CGCG	1 cut(s)	206
AciI	CCGC	3 cut(s)	241, 277, 629
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	362
AdeI	CACNNNGTG	1 cut(s)	116
AfiI	CCNNNNNNNGG	4 cut(s)	270, 380, 553, 597
AgsI	TTSAA	2 cut(s)	64, 253
AjnI	CCWGG	1 cut(s)	255
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	6 cut(s)	35, 301, 442, 475, 524, 539
AluI	AGCT	6 cut(s)	35, 301, 442, 475, 524, 539
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	3 cut(s)	162, 254, 537
AlwI	GGATC	1 cut(s)	287
AlwNI	CAGNNNCTG	1 cut(s)	385
AoxI	GGCC	4 cut(s)	24, 173, 371, 599
ApeKI	GCWGC	9 cut(s)	193, 274, 475, 506, 518, 521, 568, 571, 653
Asp700I	GAANNNNTTC	1 cut(s)	248
AspA2I	CCTAGG	1 cut(s)	409
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	556
AsuHPI	GGTGA	2 cut(s)	358, 458
AvaII	GGWCC	1 cut(s)	556
AvrII	CCTAGG	1 cut(s)	409
BaeGI	GKGCMC	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	110
BbvCI	CCTCAGC	1 cut(s)	311
BbvI	GCAGC	9 cut(s)	205, 286, 462, 518, 530, 533, 580, 583, 640
BccI	CCATC	3 cut(s)	184, 223, 408
BciT130I	CCWGG	1 cut(s)	257
BcoDI	GTCTC	3 cut(s)	162, 254, 537
BfaI	CTAG	3 cut(s)	6, 410, 534
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	9 cut(s)	194, 275, 476, 507, 519, 522, 569, 572, 654
BlnI	CCTAGG	1 cut(s)	409
BlsI	GCNGC	9 cut(s)	195, 276, 477, 508, 520, 523, 570, 573, 655
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	1 cut(s)	636
BmrFI	CCNGG	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	561
Bpu10I	CCTNAGC	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	690
BsaI	GGTCTC	2 cut(s)	254, 537
BsaJI	CCNNGG	3 cut(s)	409, 547, 605
Bsc4I	CCNNNNNNNGG	4 cut(s)	270, 380, 553, 597
Bse1I	ACTGG	2 cut(s)	148, 370
Bse3DI	GCAATG	1 cut(s)	585
Bse8I	GATNNNNATC	1 cut(s)	690
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	3 cut(s)	409, 547, 605
BseGI	GGATG	2 cut(s)	419, 694
BseJI	GATNNNNATC	1 cut(s)	690
BseLI	CCNNNNNNNGG	4 cut(s)	270, 380, 553, 597
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	5 cut(s)	95, 283, 302, 497, 627
BseNI	ACTGG	2 cut(s)	148, 370
BseRI	GAGGAG	1 cut(s)	485
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	9 cut(s)	205, 286, 462, 518, 530, 533, 580, 583, 640
BsgI	GTGCAG	1 cut(s)	212
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	4 cut(s)	26, 175, 373, 601
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	186, 224
BslFI	GGGAC	3 cut(s)	274, 396, 702
BslI	CCNNNNNNNGG	4 cut(s)	270, 380, 553, 597
BsmAI	GTCTC	3 cut(s)	162, 254, 537
BsmFI	GGGAC	3 cut(s)	274, 396, 702
BsnI	GGCC	4 cut(s)	26, 175, 373, 601
Bso31I	GGTCTC	2 cut(s)	254, 537
Bsp1286I	GDGCHC	2 cut(s)	110, 136
Bsp143I	GATC	4 cut(s)	279, 393, 453, 685
Bsp19I	CCATGG	2 cut(s)	547, 605
BspACI	CCGC	3 cut(s)	241, 277, 629
BspANI	GGCC	4 cut(s)	26, 175, 373, 601
BspCNI	CTCAG	5 cut(s)	96, 282, 303, 496, 626
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	636
BspPI	GGATC	1 cut(s)	287
BspTNI	GGTCTC	2 cut(s)	254, 537
BsrDI	GCAATG	1 cut(s)	585
BsrI	ACTGG	2 cut(s)	148, 370
BssECI	CCNNGG	3 cut(s)	409, 547, 605
BssMI	GATC	4 cut(s)	279, 393, 453, 685
BssT1I	CCWWGG	3 cut(s)	409, 547, 605
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	716
Bst6I	CTCTTC	2 cut(s)	68, 381
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstC8I	GCNNGC	4 cut(s)	191, 480, 531, 576
BstDEI	CTNAG	5 cut(s)	104, 269, 311, 483, 613
BstDSI	CCRYGG	2 cut(s)	547, 605
BstENI	CCTNNNNNAGG	1 cut(s)	268
BstF5I	GGATG	2 cut(s)	419, 694
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	4 cut(s)	282, 396, 456, 688
BstMAI	GTCTC	3 cut(s)	162, 254, 537
BstMBI	GATC	4 cut(s)	279, 393, 453, 685
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 307, 515, 530
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	568
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	142
BstSLI	GKGCMC	1 cut(s)	136
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	9 cut(s)	205, 286, 462, 518, 530, 533, 580, 583, 640
BsuRI	GGCC	4 cut(s)	26, 175, 373, 601
BtgI	CCRYGG	2 cut(s)	547, 605
BtgZI	GCGATG	1 cut(s)	678
BtsCI	GGATG	2 cut(s)	419, 694
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	4 cut(s)	191, 480, 531, 576
CaiI	CAGNNNCTG	1 cut(s)	385
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	556
CviAII	CATG	6 cut(s)	391, 548, 553, 565, 592, 606
DdeI	CTNAG	5 cut(s)	104, 269, 311, 483, 613
DpnI	GATC	4 cut(s)	281, 395, 455, 687
DpnII	GATC	4 cut(s)	279, 393, 453, 685
DraIII	CACNNNGTG	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	2 cut(s)	68, 381
EarI	CTCTTC	2 cut(s)	68, 381
EciI	GGCGGA	1 cut(s)	256
Eco130I	CCWWGG	3 cut(s)	409, 547, 605
Eco147I	AGGCCT	2 cut(s)	373, 601
Eco31I	GGTCTC	2 cut(s)	254, 537
Eco32I	GATATC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	556
Eco57I	CTGAAG	1 cut(s)	362
EcoNI	CCTNNNNNAGG	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	255
EcoRV	GATATC	1 cut(s)	169
EcoT14I	CCWWGG	3 cut(s)	409, 547, 605
ErhI	CCWWGG	3 cut(s)	409, 547, 605
FaeI	CATG	6 cut(s)	394, 551, 556, 568, 595, 609
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FaqI	GGGAC	3 cut(s)	274, 396, 702
FatI	CATG	6 cut(s)	390, 547, 552, 564, 591, 605
FauI	CCCGC	1 cut(s)	636
Fnu4HI	GCNGC	9 cut(s)	194, 275, 476, 507, 519, 522, 569, 572, 654
FokI	GGATG	2 cut(s)	426, 681
Fsp4HI	GCNGC	9 cut(s)	194, 275, 476, 507, 519, 522, 569, 572, 654
FspBI	CTAG	3 cut(s)	6, 410, 534
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	9 cut(s)	194, 275, 476, 507, 519, 522, 569, 572, 654
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	4 cut(s)	26, 175, 373, 601
HapII	CCGG	2 cut(s)	186, 224
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	6 cut(s)	394, 551, 556, 568, 595, 609
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	3 cut(s)	41, 155, 691
HpaII	CCGG	2 cut(s)	186, 224
HphI	GGTGA	2 cut(s)	358, 458
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	5 cut(s)	215, 486, 616, 683, 690
Hpy188III	TCNNGA	4 cut(s)	283, 304, 355, 457
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	4 cut(s)	7, 192, 430, 688
HpyCH4III	ACNGT	1 cut(s)	716
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	4 cut(s)	193, 518, 568, 595
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 307, 515, 530
HpyF3I	CTNAG	5 cut(s)	104, 269, 311, 483, 613
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	6 cut(s)	394, 551, 556, 568, 595, 609
HspAI	GCGC	1 cut(s)	206
Kzo9I	GATC	4 cut(s)	279, 393, 453, 685
LmnI	GCTCC	3 cut(s)	439, 472, 634
Lsp1109I	GCAGC	9 cut(s)	205, 286, 462, 518, 530, 533, 580, 583, 640
MaeI	CTAG	3 cut(s)	6, 410, 534
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	116, 496
MalI	GATC	4 cut(s)	281, 395, 455, 687
MboI	GATC	4 cut(s)	279, 393, 453, 685
MboII	GAAGA	4 cut(s)	85, 256, 368, 463
MhlI	GDGCHC	2 cut(s)	110, 136
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	1 cut(s)	209
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	35, 164
Mox20I	TGGCCA	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	175
Msp20I	TGGCCA	1 cut(s)	175
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	2 cut(s)	186, 224
MspR9I	CCNGG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	4 cut(s)	32, 307, 515, 530
NcoI	CCATGG	2 cut(s)	547, 605
NdeII	GATC	4 cut(s)	279, 393, 453, 685
NlaIII	CATG	6 cut(s)	394, 551, 556, 568, 595, 609
NlaIV	GGNNCC	1 cut(s)	636
NmuCI	GTSAC	2 cut(s)	116, 496
NspI	RCATGY	1 cut(s)	568
PceI	AGGCCT	2 cut(s)	373, 601
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	691
PflMI	CCANNNNNTGG	1 cut(s)	553
PkrI	GCNGC	9 cut(s)	195, 276, 477, 508, 520, 523, 570, 573, 655
PleI	GAGTC	2 cut(s)	35, 163
PpsI	GAGTC	2 cut(s)	35, 163
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	636
PspPI	GGNCC	1 cut(s)	556
PstNI	CAGNNNCTG	1 cut(s)	385
SatI	GCNGC	9 cut(s)	194, 275, 476, 507, 519, 522, 569, 572, 654
Sau3AI	GATC	4 cut(s)	279, 393, 453, 685
Sau96I	GGNCC	1 cut(s)	556
SchI	GAGTC	2 cut(s)	35, 164
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	110, 136
SfcI	CTRYAG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	556
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	1 cut(s)	209
SseBI	AGGCCT	2 cut(s)	373, 601
SsiI	CCGC	3 cut(s)	241, 277, 629
SspMI	CTAG	3 cut(s)	6, 410, 534
StuI	AGGCCT	2 cut(s)	373, 601
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	3 cut(s)	409, 547, 605
TaaI	ACNGT	1 cut(s)	716
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	3 cut(s)	341, 396, 423
TasI	AATT	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	691
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	2 cut(s)	116, 496
TseI	GCWGC	9 cut(s)	193, 274, 475, 506, 518, 521, 568, 571, 653
Tsp45I	GTSAC	2 cut(s)	116, 496
TspDTI	ATGAA	2 cut(s)	507, 716
TspRI	CASTG	1 cut(s)	370
Van91I	CCANNNNNTGG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	556
XagI	CCTNNNNNAGG	1 cut(s)	268
XceI	RCATGY	1 cut(s)	568
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XmaJI	CCTAGG	1 cut(s)	409
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	3 cut(s)	6, 410, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.