Agamous-like MADS-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SRF-TF | PF00319 | 10 - 50 | 4.4e-13 | SRF-type transcription factor (DNA-binding and dimerisation domain) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 419 |
| AccBSI | CCGCTC | 1 cut(s) | 110 |
| AciI | CCGC | 5 cut(s) | 108, 134, 734, 743, 749 |
| AclWI | GGATC | 3 cut(s) | 405, 537, 550 |
| AcuI | CTGAAG | 1 cut(s) | 107 |
| AfaI | GTAC | 1 cut(s) | 29 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 270, 586 |
| AflII | CTTAAG | 1 cut(s) | 434 |
| AgsI | TTSAA | 5 cut(s) | 155, 364, 389, 394, 668 |
| AjnI | CCWGG | 3 cut(s) | 324, 477, 677 |
| AluBI | AGCT | 5 cut(s) | 310, 472, 488, 497, 508 |
| AluI | AGCT | 5 cut(s) | 310, 472, 488, 497, 508 |
| Alw21I | GWGCWC | 1 cut(s) | 510 |
| Alw26I | GTCTC | 4 cut(s) | 13, 254, 312, 759 |
| AlwI | GGATC | 3 cut(s) | 405, 537, 550 |
| ApeKI | GCWGC | 7 cut(s) | 128, 131, 454, 562, 565, 652, 655 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 170 |
| AspS9I | GGNCC | 1 cut(s) | 481 |
| AsuHPI | GGTGA | 1 cut(s) | 548 |
| AvaII | GGWCC | 1 cut(s) | 481 |
| BamHI | GGATCC | 1 cut(s) | 542 |
| BanII | GRGCYC | 1 cut(s) | 510 |
| BbsI | GAAGAC | 1 cut(s) | 163 |
| Bbv12I | GWGCWC | 1 cut(s) | 510 |
| BbvI | GCAGC | 7 cut(s) | 115, 118, 466, 574, 577, 664, 667 |
| BccI | CCATC | 2 cut(s) | 223, 712 |
| BceAI | ACGGC | 1 cut(s) | 287 |
| BciT130I | CCWGG | 3 cut(s) | 326, 479, 679 |
| BcoDI | GTCTC | 4 cut(s) | 13, 254, 312, 759 |
| BfaI | CTAG | 1 cut(s) | 6 |
| BfmI | CTRYAG | 3 cut(s) | 23, 142, 582 |
| BfrI | CTTAAG | 1 cut(s) | 434 |
| BisI | GCNGC | 7 cut(s) | 129, 132, 455, 563, 566, 653, 656 |
| BlsI | GCNGC | 7 cut(s) | 130, 133, 456, 564, 567, 654, 657 |
| Bme1390I | CCNGG | 3 cut(s) | 326, 479, 679 |
| Bme18I | GGWCC | 1 cut(s) | 481 |
| BmgT120I | GGNCC | 1 cut(s) | 481 |
| BmiI | GGNNCC | 2 cut(s) | 212, 544 |
| BmrFI | CCNGG | 3 cut(s) | 326, 479, 679 |
| BmsI | GCATC | 2 cut(s) | 621, 651 |
| BpiI | GAAGAC | 1 cut(s) | 163 |
| BpuEI | CTTGAG | 1 cut(s) | 327 |
| BsaI | GGTCTC | 1 cut(s) | 254 |
| BsaJI | CCNNGG | 1 cut(s) | 677 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 270, 586 |
| Bse3DI | GCAATG | 1 cut(s) | 787 |
| BseBI | CCWGG | 3 cut(s) | 326, 479, 679 |
| BseDI | CCNNGG | 1 cut(s) | 677 |
| BseGI | GGATG | 1 cut(s) | 181 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 270, 586 |
| BseMI | GCAATG | 1 cut(s) | 787 |
| BseMII | CTCAG | 1 cut(s) | 392 |
| BseRI | GAGGAG | 2 cut(s) | 476, 656 |
| BseXI | GCAGC | 7 cut(s) | 115, 118, 466, 574, 577, 664, 667 |
| BsgI | GTGCAG | 1 cut(s) | 611 |
| BsiHKAI | GWGCWC | 1 cut(s) | 510 |
| BsiSI | CCGG | 1 cut(s) | 224 |
| BslFI | GGGAC | 1 cut(s) | 132 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 270, 586 |
| BsmAI | GTCTC | 4 cut(s) | 13, 254, 312, 759 |
| BsmFI | GGGAC | 1 cut(s) | 132 |
| BsmI | GAATGC | 1 cut(s) | 81 |
| Bso31I | GGTCTC | 1 cut(s) | 254 |
| Bsp1286I | GDGCHC | 1 cut(s) | 510 |
| Bsp143I | GATC | 3 cut(s) | 382, 397, 542 |
| BspACI | CCGC | 5 cut(s) | 108, 134, 734, 743, 749 |
| BspCNI | CTCAG | 1 cut(s) | 393 |
| BspHI | TCATGA | 1 cut(s) | 693 |
| BspLI | GGNNCC | 2 cut(s) | 212, 544 |
| BspMAI | CTGCAG | 1 cut(s) | 27 |
| BspPI | GGATC | 3 cut(s) | 405, 537, 550 |
| BspTI | CTTAAG | 1 cut(s) | 434 |
| BspTNI | GGTCTC | 1 cut(s) | 254 |
| BsrBI | CCGCTC | 1 cut(s) | 110 |
| BsrDI | GCAATG | 1 cut(s) | 787 |
| BssECI | CCNNGG | 1 cut(s) | 677 |
| BssMI | GATC | 3 cut(s) | 382, 397, 542 |
| Bst2UI | CCWGG | 3 cut(s) | 326, 479, 679 |
| Bst4CI | ACNGT | 2 cut(s) | 502, 705 |
| BstAFI | CTTAAG | 1 cut(s) | 434 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 661 |
| BstDEI | CTNAG | 1 cut(s) | 401 |
| BstF5I | GGATG | 1 cut(s) | 181 |
| BstKTI | GATC | 3 cut(s) | 385, 400, 545 |
| BstMAI | GTCTC | 4 cut(s) | 13, 254, 312, 759 |
| BstMBI | GATC | 3 cut(s) | 382, 397, 542 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 494, 652, 661, 670, 742 |
| BstNI | CCWGG | 3 cut(s) | 326, 479, 679 |
| BstSCI | CCNGG | 3 cut(s) | 324, 477, 677 |
| BstSFI | CTRYAG | 3 cut(s) | 23, 142, 582 |
| BstV1I | GCAGC | 7 cut(s) | 115, 118, 466, 574, 577, 664, 667 |
| BstV2I | GAAGAC | 1 cut(s) | 163 |
| BstX2I | RGATCY | 2 cut(s) | 397, 542 |
| BstYI | RGATCY | 2 cut(s) | 397, 542 |
| BtgZI | GCGATG | 1 cut(s) | 16 |
| BtsCI | GGATG | 1 cut(s) | 181 |
| CciI | TCATGA | 1 cut(s) | 693 |
| Cfr13I | GGNCC | 1 cut(s) | 481 |
| CsiI | ACCWGGT | 1 cut(s) | 477 |
| Csp6I | GTAC | 1 cut(s) | 28 |
| CviAII | CATG | 4 cut(s) | 349, 685, 694, 789 |
| CviJI | RGCY | 8 cut(s) | 5, 128, 163, 310, 472, 488, 497, 508 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 128, 163, 310, 472, 488, 497, 508 |
| CviQI | GTAC | 1 cut(s) | 28 |
| DdeI | CTNAG | 1 cut(s) | 401 |
| DpnI | GATC | 3 cut(s) | 384, 399, 544 |
| DpnII | GATC | 3 cut(s) | 382, 397, 542 |
| EciI | GGCGGA | 1 cut(s) | 738 |
| Ecl136II | GAGCTC | 1 cut(s) | 508 |
| Eco24I | GRGCYC | 1 cut(s) | 510 |
| Eco31I | GGTCTC | 1 cut(s) | 254 |
| Eco32I | GATATC | 1 cut(s) | 448 |
| Eco47I | GGWCC | 1 cut(s) | 481 |
| Eco53kI | GAGCTC | 1 cut(s) | 508 |
| Eco57I | CTGAAG | 1 cut(s) | 107 |
| EcoICRI | GAGCTC | 1 cut(s) | 508 |
| EcoRII | CCWGG | 3 cut(s) | 324, 477, 677 |
| EcoRV | GATATC | 1 cut(s) | 448 |
| EcoT22I | ATGCAT | 1 cut(s) | 621 |
| EcoT38I | GRGCYC | 1 cut(s) | 510 |
| FaeI | CATG | 4 cut(s) | 352, 688, 697, 792 |
| FaqI | GGGAC | 1 cut(s) | 132 |
| FatI | CATG | 4 cut(s) | 348, 684, 693, 788 |
| FauI | CCCGC | 1 cut(s) | 741 |
| FauNDI | CATATG | 1 cut(s) | 615 |
| Fnu4HI | GCNGC | 7 cut(s) | 129, 132, 455, 563, 566, 653, 656 |
| FokI | GGATG | 1 cut(s) | 168 |
| FriOI | GRGCYC | 1 cut(s) | 510 |
| Fsp4HI | GCNGC | 7 cut(s) | 129, 132, 455, 563, 566, 653, 656 |
| FspBI | CTAG | 1 cut(s) | 6 |
| GluI | GCNGC | 7 cut(s) | 129, 132, 455, 563, 566, 653, 656 |
| HapII | CCGG | 1 cut(s) | 224 |
| Hin1II | CATG | 4 cut(s) | 352, 688, 697, 792 |
| HpaII | CCGG | 1 cut(s) | 224 |
| HphI | GGTGA | 1 cut(s) | 548 |
| Hpy166II | GTNNAC | 1 cut(s) | 193 |
| Hpy188I | TCNGA | 5 cut(s) | 87, 215, 382, 402, 764 |
| Hpy188III | TCNNGA | 5 cut(s) | 48, 185, 257, 386, 694 |
| Hpy8I | GTNNAC | 1 cut(s) | 193 |
| HpyAV | CCTTC | 5 cut(s) | 85, 160, 274, 358, 388 |
| HpyCH4III | ACNGT | 2 cut(s) | 502, 705 |
| HpyCH4V | TGCA | 6 cut(s) | 25, 530, 592, 619, 634, 730 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 494, 652, 661, 670, 742 |
| HpyF3I | CTNAG | 1 cut(s) | 401 |
| Hsp92II | CATG | 4 cut(s) | 352, 688, 697, 792 |
| Kzo9I | GATC | 3 cut(s) | 382, 397, 542 |
| LmnI | GCTCC | 3 cut(s) | 559, 610, 643 |
| Lsp1109I | GCAGC | 7 cut(s) | 115, 118, 466, 574, 577, 664, 667 |
| LweI | GCATC | 2 cut(s) | 621, 651 |
| MabI | ACCWGGT | 1 cut(s) | 477 |
| MaeI | CTAG | 1 cut(s) | 6 |
| MaeIII | GTNAC | 2 cut(s) | 116, 404 |
| MalI | GATC | 3 cut(s) | 384, 399, 544 |
| MbiI | CCGCTC | 1 cut(s) | 110 |
| MboI | GATC | 3 cut(s) | 382, 397, 542 |
| MboII | GAAGA | 5 cut(s) | 21, 63, 100, 163, 727 |
| MflI | RGATCY | 2 cut(s) | 397, 542 |
| MhlI | GDGCHC | 1 cut(s) | 510 |
| MluCI | AATT | 1 cut(s) | 389 |
| MnlI | CCTC | 6 cut(s) | 419, 454, 532, 545, 580, 634 |
| Mph1103I | ATGCAT | 1 cut(s) | 621 |
| MroXI | GAANNNNTTC | 1 cut(s) | 170 |
| MseI | TTAA | 2 cut(s) | 63, 435 |
| MspCI | CTTAAG | 1 cut(s) | 434 |
| MspI | CCGG | 1 cut(s) | 224 |
| MspR9I | CCNGG | 3 cut(s) | 326, 479, 679 |
| Mva1269I | GAATGC | 1 cut(s) | 81 |
| MvaI | CCWGG | 3 cut(s) | 326, 479, 679 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 494, 652, 661, 670, 742 |
| NdeI | CATATG | 1 cut(s) | 615 |
| NdeII | GATC | 3 cut(s) | 382, 397, 542 |
| NlaIII | CATG | 4 cut(s) | 352, 688, 697, 792 |
| NlaIV | GGNNCC | 2 cut(s) | 212, 544 |
| NmuCI | GTSAC | 2 cut(s) | 116, 404 |
| NsiI | ATGCAT | 1 cut(s) | 621 |
| PagI | TCATGA | 1 cut(s) | 693 |
| PctI | GAATGC | 1 cut(s) | 81 |
| PdmI | GAANNNNTTC | 1 cut(s) | 170 |
| PkrI | GCNGC | 7 cut(s) | 130, 133, 456, 564, 567, 654, 657 |
| PsiI | TTATAA | 1 cut(s) | 419 |
| Psp124BI | GAGCTC | 1 cut(s) | 510 |
| Psp6I | CCWGG | 3 cut(s) | 324, 477, 677 |
| PspGI | CCWGG | 3 cut(s) | 324, 477, 677 |
| PspN4I | GGNNCC | 2 cut(s) | 212, 544 |
| PspPI | GGNCC | 1 cut(s) | 481 |
| PstI | CTGCAG | 1 cut(s) | 27 |
| PsuI | RGATCY | 2 cut(s) | 397, 542 |
| RsaI | GTAC | 1 cut(s) | 29 |
| RsaNI | GTAC | 1 cut(s) | 28 |
| SacI | GAGCTC | 1 cut(s) | 510 |
| SaqAI | TTAA | 2 cut(s) | 63, 435 |
| SatI | GCNGC | 7 cut(s) | 129, 132, 455, 563, 566, 653, 656 |
| Sau3AI | GATC | 3 cut(s) | 382, 397, 542 |
| Sau96I | GGNCC | 1 cut(s) | 481 |
| ScrFI | CCNGG | 3 cut(s) | 326, 479, 679 |
| SduI | GDGCHC | 1 cut(s) | 510 |
| SexAI | ACCWGGT | 1 cut(s) | 477 |
| SfaNI | GCATC | 2 cut(s) | 621, 651 |
| SfcI | CTRYAG | 3 cut(s) | 23, 142, 582 |
| SinI | GGWCC | 1 cut(s) | 481 |
| SmlI | CTYRAG | 2 cut(s) | 342, 434 |
| SmoI | CTYRAG | 2 cut(s) | 342, 434 |
| Sse9I | AATT | 1 cut(s) | 389 |
| SsiI | CCGC | 5 cut(s) | 108, 134, 734, 743, 749 |
| SspMI | CTAG | 1 cut(s) | 6 |
| SstI | GAGCTC | 1 cut(s) | 510 |
| StyD4I | CCNGG | 3 cut(s) | 324, 477, 677 |
| TaaI | ACNGT | 2 cut(s) | 502, 705 |
| TaqI | TCGA | 3 cut(s) | 159, 354, 423 |
| TasI | AATT | 1 cut(s) | 389 |
| TatI | WGTACW | 1 cut(s) | 27 |
| Tru1I | TTAA | 2 cut(s) | 63, 435 |
| Tru9I | TTAA | 2 cut(s) | 63, 435 |
| TseFI | GTSAC | 2 cut(s) | 116, 404 |
| TseI | GCWGC | 7 cut(s) | 128, 131, 454, 562, 565, 652, 655 |
| Tsp45I | GTSAC | 2 cut(s) | 116, 404 |
| TspDTI | ATGAA | 2 cut(s) | 673, 710 |
| Vha464I | CTTAAG | 1 cut(s) | 434 |
| VpaK11BI | GGWCC | 1 cut(s) | 481 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 553 |
| XmnI | GAANNNNTTC | 1 cut(s) | 170 |
| XspI | CTAG | 1 cut(s) | 6 |
| Zsp2I | ATGCAT | 1 cut(s) | 621 |