Rmu_sc0002349.1_g000024
MADS Family

Agamous-like MADS-box protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002349.1
Physical Location & Seq
Forward (+)
80843 .. 82933
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002349.1_g000024.1.cds

Sequence Viewer

Length: 1080 bp
atgagactgcactacattgccaatgagactttcaaacgaatgacatttagaaaaggaaagaaaggccttctgaagaaggtgggtgagataaccactctctgtgacataaaggccgcggtgatcatatacagcccctttgatgccgagctggaggtcttcccaagtcatccggaagtccatgaaatggtaacaaagttccgagatatgccacaaatggacaagacgagaaagttgatcaaccaggagaccttcttaagacagcgaattgacaaagtccgggagcatatcagaaagcaaagaagagacaatcaagaaaaggagatcactcaagttttgaagaaggtgggtgagataaccattctttgtgacatcaaggtggcggcgatcatctacatcccctttgactccaagccgaaggtgttcccaagtcatccggaagtccatgaaatggtaacaaagttccgagatatgccacaaatggacaagatgagaaagttgatcaaccaggagaccttcttacgacagcgaattgacaaaattcgggagcagatcataaagaaaagaagagacaaccgagaaaaggagatcactcaagttctgaagaaggtgggtaagataaccactctctgtgacatcaaggctgcggcgatcatctacagcccctttgacgccaagtcgaaggtgttcccaaatagcgggagagaagaaggaagaaaatatcatactcgtgattctagaccccgacagttgttactctcagaaaggtacataaacatttggtgcttggaagagggcacctttctagttaacagtaccataggcctcaccgcaatggtcgagatcaacaatgctaacgacgtcctaaaatctggggacagacctcagggcatcttgaactttttacctattgatggtgagatctcaacattctcacctgatggatctgtcacacatatcactgacactgttgtagcccttgaaatcgccaagaaggacctcctccaattcaaggaacaggcagtaaggcagcaatgttgttgtaatagctacccagaaccatgtaaaggggttagaaagtga

Protein Analysis

359

Amino Acids

41.75

Weight (kDa)

9.5

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 861
AccB1I GGYRCC 1 cut(s) 794
AccB7I CCANNNNNTGG 2 cut(s) 184, 448
AccII CGCG 1 cut(s) 116
AccIII TCCGGA 2 cut(s) 169, 433
AciI CCGC 6 cut(s) 114, 116, 380, 644, 696, 828
AclWI GGATC 1 cut(s) 949
AcsI RAATTY 1 cut(s) 537
AcuI CTGAAG 2 cut(s) 92, 620
AcyI GRCGYC 2 cut(s) 669, 858
AfaI GTAC 2 cut(s) 767, 814
AfiI CCNNNNNNNGG 7 cut(s) 184, 448, 580, 695, 911, 1009, 1064
AflII CTTAAG 1 cut(s) 253
AgsI TTSAA 5 cut(s) 34, 337, 895, 980, 1009
AhdI GACNNNNNGTC 1 cut(s) 673
AjnI CCWGG 2 cut(s) 240, 504
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 2 cut(s) 148, 1047
AluI AGCT 2 cut(s) 148, 1047
Alw26I GTCTC 5 cut(s) 20, 239, 297, 503, 561
AlwI GGATC 1 cut(s) 949
Aor13HI TCCGGA 2 cut(s) 169, 433
AoxI GGCC 3 cut(s) 64, 111, 820
ApeKI GCWGC 2 cut(s) 641, 1027
ApoI RAATTY 1 cut(s) 537
Asp700I GAANNNNTTC 2 cut(s) 419, 683
AspS9I GGNCC 1 cut(s) 994
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 6 cut(s) 95, 130, 359, 817, 924, 926
AvaII GGWCC 1 cut(s) 994
AxyI CCTNAGG 1 cut(s) 882
BaeGI GKGCMC 1 cut(s) 797
BanI GGYRCC 1 cut(s) 794
BauI CACGAG 1 cut(s) 726
BbsI GAAGAC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 628, 1039
BccI CCATC 2 cut(s) 905, 932
BciT130I CCWGG 2 cut(s) 242, 506
BclI TGATCA 3 cut(s) 120, 234, 498
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 5 cut(s) 20, 239, 297, 503, 561
BfaI CTAG 2 cut(s) 735, 803
BfmI CTRYAG 1 cut(s) 655
BfrI CTTAAG 1 cut(s) 253
BglII AGATCT 1 cut(s) 918
BisI GCNGC 5 cut(s) 114, 381, 642, 645, 1028
BlsI GCNGC 5 cut(s) 115, 382, 643, 646, 1029
Bme1390I CCNGG 3 cut(s) 242, 278, 506
Bme18I GGWCC 1 cut(s) 994
BmeRI GACNNNNNGTC 1 cut(s) 673
BmgT120I GGNCC 1 cut(s) 994
BmiI GGNNCC 1 cut(s) 796
BmrFI CCNGG 3 cut(s) 242, 278, 506
BmsI GCATC 2 cut(s) 130, 897
BpiI GAAGAC 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 170
BpuEI CTTGAG 2 cut(s) 312, 576
BpuMI CCSGG 1 cut(s) 278
BsaHI GRCGYC 2 cut(s) 669, 858
BsaI GGTCTC 2 cut(s) 239, 503
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 2 cut(s) 169, 433
Bsc4I CCNNNNNNNGG 7 cut(s) 184, 448, 580, 695, 911, 1009, 1064
Bse21I CCTNAGG 1 cut(s) 882
Bse3DI GCAATG 3 cut(s) 15, 837, 1037
BseAI TCCGGA 2 cut(s) 169, 433
BseBI CCWGG 2 cut(s) 242, 506
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 3 cut(s) 166, 393, 430
BseLI CCNNNNNNNGG 7 cut(s) 184, 448, 580, 695, 911, 1009, 1064
BseMI GCAATG 3 cut(s) 15, 837, 1037
BseMII CTCAG 2 cut(s) 771, 896
BseRI GAGGAG 1 cut(s) 989
BseSI GKGCMC 1 cut(s) 797
BseXI GCAGC 2 cut(s) 628, 1039
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 3 cut(s) 66, 113, 822
BshNI GGYRCC 1 cut(s) 794
BsiSI CCGG 3 cut(s) 170, 277, 434
BslFI GGGAC 1 cut(s) 887
BslI CCNNNNNNNGG 7 cut(s) 184, 448, 580, 695, 911, 1009, 1064
BsmAI GTCTC 5 cut(s) 20, 239, 297, 503, 561
BsmFI GGGAC 1 cut(s) 887
BsnI GGCC 3 cut(s) 66, 113, 822
Bso31I GGTCTC 2 cut(s) 239, 503
Bsp1286I GDGCHC 1 cut(s) 797
Bsp13I TCCGGA 2 cut(s) 169, 433
BspACI CCGC 6 cut(s) 114, 116, 380, 644, 696, 828
BspANI GGCC 3 cut(s) 66, 113, 822
BspCNI CTCAG 2 cut(s) 770, 895
BspEI TCCGGA 2 cut(s) 169, 433
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 796
BspPI GGATC 1 cut(s) 949
BspT107I GGYRCC 1 cut(s) 794
BspTI CTTAAG 1 cut(s) 253
BspTNI GGTCTC 2 cut(s) 239, 503
BsrDI GCAATG 3 cut(s) 15, 837, 1037
BssECI CCNNGG 1 cut(s) 114
BssNI GRCGYC 2 cut(s) 669, 858
BssSI CACGAG 1 cut(s) 726
Bst2BI CACGAG 1 cut(s) 726
Bst2UI CCWGG 2 cut(s) 242, 506
Bst4CI ACNGT 3 cut(s) 747, 812, 967
Bst6I CTCTTC 3 cut(s) 295, 559, 783
BstACI GRCGYC 2 cut(s) 669, 858
BstAFI CTTAAG 1 cut(s) 253
BstDEI CTNAG 2 cut(s) 757, 882
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 3 cut(s) 166, 393, 430
BstFNI CGCG 1 cut(s) 116
BstMAI GTCTC 5 cut(s) 20, 239, 297, 503, 561
BstNI CCWGG 2 cut(s) 242, 506
BstSCI CCNGG 3 cut(s) 240, 276, 504
BstSFI CTRYAG 1 cut(s) 655
BstSLI GKGCMC 1 cut(s) 797
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 628, 1039
BstV2I GAAGAC 1 cut(s) 148
BstX2I RGATCY 2 cut(s) 918, 941
BstYI RGATCY 2 cut(s) 918, 941
Bsu36I CCTNAGG 1 cut(s) 882
BsuRI GGCC 3 cut(s) 66, 113, 822
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 3 cut(s) 166, 393, 430
BtsIMutI CAGTG 2 cut(s) 957, 963
Cfr13I GGNCC 1 cut(s) 994
Cfr42I CCGCGG 1 cut(s) 117
CseI GACGC 1 cut(s) 677
Csp6I GTAC 2 cut(s) 766, 813
CviAII CATG 3 cut(s) 179, 443, 1059
CviQI GTAC 2 cut(s) 766, 813
DdeI CTNAG 2 cut(s) 757, 882
DriI GACNNNNNGTC 1 cut(s) 673
Eam1104I CTCTTC 3 cut(s) 295, 559, 783
Eam1105I GACNNNNNGTC 1 cut(s) 673
EarI CTCTTC 3 cut(s) 295, 559, 783
Eco147I AGGCCT 2 cut(s) 66, 822
Eco31I GGTCTC 2 cut(s) 239, 503
Eco47I GGWCC 1 cut(s) 994
Eco57I CTGAAG 2 cut(s) 92, 620
Eco81I CCTNAGG 1 cut(s) 882
EcoO109I RGGNCCY 1 cut(s) 994
EcoRII CCWGG 2 cut(s) 240, 504
FaeI CATG 3 cut(s) 182, 446, 1062
FaqI GGGAC 1 cut(s) 887
FatI CATG 3 cut(s) 178, 442, 1058
FauI CCCGC 1 cut(s) 689
FbaI TGATCA 3 cut(s) 120, 234, 498
Fnu4HI GCNGC 5 cut(s) 114, 381, 642, 645, 1028
FokI GGATG 3 cut(s) 153, 380, 417
Fsp4HI GCNGC 5 cut(s) 114, 381, 642, 645, 1028
FspBI CTAG 2 cut(s) 735, 803
GluI GCNGC 5 cut(s) 114, 381, 642, 645, 1028
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 3 cut(s) 66, 113, 822
HapII CCGG 3 cut(s) 170, 277, 434
HgaI GACGC 1 cut(s) 677
Hin1I GRCGYC 2 cut(s) 669, 858
Hin1II CATG 3 cut(s) 182, 446, 1062
HincII GTYRAC 1 cut(s) 808
HindII GTYRAC 1 cut(s) 808
HinfI GANTC 2 cut(s) 404, 731
HpaI GTTAAC 1 cut(s) 808
HpaII CCGG 3 cut(s) 170, 277, 434
HphI GGTGA 6 cut(s) 95, 130, 359, 817, 924, 926
Hpy166II GTNNAC 1 cut(s) 808
Hpy188I TCNGA 6 cut(s) 72, 200, 290, 464, 600, 760
Hpy188III TCNNGA 8 cut(s) 170, 311, 434, 542, 728, 735, 838, 892
Hpy8I GTNNAC 1 cut(s) 808
Hpy99I CGWCG 1 cut(s) 860
HpyCH4III ACNGT 3 cut(s) 747, 812, 967
HpyCH4IV ACGT 1 cut(s) 858
HpyCH4V TGCA 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 757, 882
HpySE526I ACGT 1 cut(s) 858
Hsp92I GRCGYC 2 cut(s) 669, 858
Hsp92II CATG 3 cut(s) 182, 446, 1062
Kpn2I TCCGGA 2 cut(s) 169, 433
Ksp22I TGATCA 3 cut(s) 120, 234, 498
KspAI GTTAAC 1 cut(s) 808
KspI CCGCGG 1 cut(s) 117
LmnI GCTCC 2 cut(s) 280, 544
Lsp1109I GCAGC 2 cut(s) 628, 1039
LweI GCATC 2 cut(s) 130, 897
MaeI CTAG 2 cut(s) 735, 803
MaeII ACGT 1 cut(s) 858
MaeIII GTNAC 7 cut(s) 101, 187, 365, 451, 629, 750, 946
MboII GAAGA 9 cut(s) 85, 148, 312, 349, 576, 613, 716, 723, 800
MflI RGATCY 2 cut(s) 918, 941
MhlI GDGCHC 1 cut(s) 797
MluCI AATT 4 cut(s) 264, 528, 537, 1004
MlyI GAGTC 1 cut(s) 398
MnlI CCTC 6 cut(s) 145, 784, 833, 891, 1007, 1010
MroI TCCGGA 2 cut(s) 169, 433
MroXI GAANNNNTTC 2 cut(s) 419, 683
MseI TTAA 2 cut(s) 254, 807
MslI CAYNNNNRTG 3 cut(s) 374, 726, 830
MspA1I CMGCKG 1 cut(s) 116
MspCI CTTAAG 1 cut(s) 253
MspI CCGG 3 cut(s) 170, 277, 434
MspR9I CCNGG 3 cut(s) 242, 278, 506
MvaI CCWGG 2 cut(s) 242, 506
MvnI CGCG 1 cut(s) 116
NciI CCSGG 1 cut(s) 278
NlaIII CATG 3 cut(s) 182, 446, 1062
NlaIV GGNNCC 1 cut(s) 796
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 4 cut(s) 101, 365, 629, 946
PceI AGGCCT 2 cut(s) 66, 822
PdmI GAANNNNTTC 2 cut(s) 419, 683
PfeI GAWTC 1 cut(s) 731
PflFI GACNNNGTC 1 cut(s) 272
PflMI CCANNNNNTGG 2 cut(s) 184, 448
PfoI TCCNGGA 1 cut(s) 276
PkrI GCNGC 5 cut(s) 115, 382, 643, 646, 1029
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
PpuMI RGGWCCY 1 cut(s) 994
Psp5II RGGWCCY 1 cut(s) 994
Psp6I CCWGG 2 cut(s) 240, 504
PspGI CCWGG 2 cut(s) 240, 504
PspN4I GGNNCC 1 cut(s) 796
PspPI GGNCC 1 cut(s) 994
PspPPI RGGWCCY 1 cut(s) 994
PsuI RGATCY 2 cut(s) 918, 941
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 2 cut(s) 767, 814
RsaNI GTAC 2 cut(s) 766, 813
RseI CAYNNNNRTG 3 cut(s) 374, 726, 830
SacII CCGCGG 1 cut(s) 117
SaqAI TTAA 2 cut(s) 254, 807
SatI GCNGC 5 cut(s) 114, 381, 642, 645, 1028
Sau96I GGNCC 1 cut(s) 994
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 3 cut(s) 242, 278, 506
SduI GDGCHC 1 cut(s) 797
SfaNI GCATC 2 cut(s) 130, 897
SfcI CTRYAG 1 cut(s) 655
Sfr303I CCGCGG 1 cut(s) 117
SgrBI CCGCGG 1 cut(s) 117
SinI GGWCC 1 cut(s) 994
SmiMI CAYNNNNRTG 3 cut(s) 374, 726, 830
SmlI CTYRAG 3 cut(s) 253, 327, 591
SmoI CTYRAG 3 cut(s) 253, 327, 591
Sse9I AATT 4 cut(s) 264, 528, 537, 1004
SseBI AGGCCT 2 cut(s) 66, 822
SsiI CCGC 6 cut(s) 114, 116, 380, 644, 696, 828
SspMI CTAG 2 cut(s) 735, 803
StuI AGGCCT 2 cut(s) 66, 822
StyD4I CCNGG 3 cut(s) 240, 276, 504
TaaI ACNGT 3 cut(s) 747, 812, 967
TaiI ACGT 1 cut(s) 861
TaqI TCGA 2 cut(s) 677, 837
TasI AATT 4 cut(s) 264, 528, 537, 1004
TauI GCSGC 3 cut(s) 116, 383, 647
TfiI GAWTC 1 cut(s) 731
Tru1I TTAA 2 cut(s) 254, 807
Tru9I TTAA 2 cut(s) 254, 807
TscAI CASTG 2 cut(s) 964, 970
TseFI GTSAC 4 cut(s) 101, 365, 629, 946
TseI GCWGC 2 cut(s) 641, 1027
Tsp45I GTSAC 4 cut(s) 101, 365, 629, 946
TspDTI ATGAA 2 cut(s) 195, 459
TspRI CASTG 2 cut(s) 964, 970
Tth111I GACNNNGTC 1 cut(s) 272
Van91I CCANNNNNTGG 2 cut(s) 184, 448
Vha464I CTTAAG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 994
XapI RAATTY 1 cut(s) 537
XbaI TCTAGA 1 cut(s) 734
XmnI GAANNNNTTC 2 cut(s) 419, 683
XspI CTAG 2 cut(s) 735, 803
ZraI GACGTC 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.