RLG00000025146
MADS Family

Agamous-like MADS-box protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
42494859 .. 42496070
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025146

Sequence Viewer

Length: 999 bp
ATGTCTGCTTTAAATAGAGCAGAGTCTCTTCAGGGCAAGAGCAAACCAGAAAAGCCATTCCTTCATTCCCTTCTTCCCAGTTTGCAACATTTTCATCTTTTCTTTCTAGCCATGACTAGAAAGAAGGTGAAACTTACCTACATCACTAATGATAGTGCTCGAAAAGCAACATATAAGAAAAGGAAGAAGGGTCTCATGAAAAAGGTGAGTGAACTCACCACCCTTTGTGACATTGATGCTTGTGCTATTATCTACAGCCCTTACGACTCCCAGCCTGAAATTTGGCCTTCCCCCTTGGGAGTCCAACGTGTGCTTGCGCAGTTCAAGACCATGCCTGAAATGGAGCAAAGCAAGAAGATGGTGAATCAGGAGACTTTCCTGAGGCAAAGAATCAACAAGGCTCAGGAACAGCTTAAGAAGCAAAAGAAAGACAACCGGGAAAAGGAGATGGCTCGTGTGATGTTCCAAAGCCTAACTGGAAAGTCCCTCCAGGGCTTGACACTGTCAGACCTGACTGATCTCGGCTGGGTCATTGACCAACACCTGAAGGAGTTACATCTCAGGATGAAGAACATTAAGGAGGAGGCTGTGAAGAGCCAGAACCAAGTGCAAGGAGCACAAGGGGTGTCAGCTGCTGCAACGGATCATAGAATGGCAGCAATGAAGAGTAATGGAGAGGGCAGCAGCAGCAACATGGCAATGAAGACTGGTGAAGAGGGCAGCAATATGCAGCATGCAGCCCTTGACAGGCAAGTTTTTGATCACATGCATAACATGGAGGCAATGCAGCTCCAAATGATGCAGATGGCAGCTCAGAAGCAGCAGAACCCTTGGTTCATGGACATGATGAATGCGCCACCACCAACACCACTGCCGCATCCAGATCATCATCAGCATATGGGGTTTACCGGGGAGGATATGATGCTTCCTTTCGCGGATCATAACCACAGTACTATGTGGCCAAATCCTCCTCCAGCTGGCTGCTTTAATTTTCCTTGA

Protein Analysis

333

Amino Acids

37.85

Weight (kDa)

9.33

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 47 - 88 1.1e-17 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 318
AccII CGCG 1 cut(s) 935
AciI CCGC 2 cut(s) 875, 935
AclWI GGATC 2 cut(s) 651, 945
AcoI YGGCCR 1 cut(s) 959
AcsI RAATTY 1 cut(s) 279
AcuI CTGAAG 2 cut(s) 14, 566
AfaI GTAC 1 cut(s) 952
AfiI CCNNNNNNNGG 3 cut(s) 442, 747, 977
AflII CTTAAG 1 cut(s) 413
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 1 cut(s) 325
AjnI CCWGG 1 cut(s) 489
AluBI AGCT 5 cut(s) 412, 632, 790, 812, 977
AluI AGCT 5 cut(s) 412, 632, 790, 812, 977
Alw21I GWGCWC 2 cut(s) 160, 619
Alw26I GTCTC 3 cut(s) 30, 197, 365
AlwI GGATC 2 cut(s) 651, 945
AlwNI CAGNNNCTG 1 cut(s) 635
AoxI GGCC 2 cut(s) 284, 959
ApoI RAATTY 1 cut(s) 279
AspLEI GCGC 2 cut(s) 319, 856
AsuC2I CCSGG 2 cut(s) 437, 910
AsuHPI GGTGA 5 cut(s) 139, 208, 217, 373, 722
AxyI CCTNAGG 1 cut(s) 380
BalI TGGCCA 1 cut(s) 961
BauI CACGAG 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 710
Bbv12I GWGCWC 2 cut(s) 160, 619
BccI CCATC 3 cut(s) 352, 442, 799
BciT130I CCWGG 1 cut(s) 491
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 2 cut(s) 437, 910
BcoDI GTCTC 3 cut(s) 30, 197, 365
BfaI CTAG 2 cut(s) 107, 117
BfmI CTRYAG 1 cut(s) 253
BfrI CTTAAG 1 cut(s) 413
BmcAI AGTACT 1 cut(s) 952
Bme1390I CCNGG 3 cut(s) 437, 491, 910
BmrFI CCNGG 3 cut(s) 437, 491, 910
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 4 cut(s) 226, 789, 886, 912
BmuI ACTGGG 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 710
BpmI CTGGAG 2 cut(s) 473, 957
Bpu10I CCTNAGC 1 cut(s) 402
BpuMI CCSGG 2 cut(s) 437, 910
BsaBI GATNNNNATC 1 cut(s) 888
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 4 cut(s) 294, 490, 830, 909
Bsc4I CCNNNNNNNGG 3 cut(s) 442, 747, 977
Bse1I ACTGG 3 cut(s) 78, 481, 712
Bse21I CCTNAGG 1 cut(s) 380
Bse3DI GCAATG 3 cut(s) 666, 705, 789
Bse8I GATNNNNATC 1 cut(s) 888
BseBI CCWGG 1 cut(s) 491
BseDI CCNNGG 4 cut(s) 294, 490, 830, 909
BseGI GGATG 2 cut(s) 570, 877
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 3 cut(s) 442, 747, 977
BseMI GCAATG 3 cut(s) 666, 705, 789
BseMII CTCAG 4 cut(s) 371, 416, 574, 827
BseNI ACTGG 3 cut(s) 78, 481, 712
BseRI GAGGAG 2 cut(s) 596, 960
BseYI CCCAGC 2 cut(s) 270, 525
Bsh1236I CGCG 1 cut(s) 935
BshFI GGCC 2 cut(s) 286, 961
BsiHKAI GWGCWC 2 cut(s) 160, 619
BsiSI CCGG 2 cut(s) 436, 909
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 3 cut(s) 442, 747, 977
BsmAI GTCTC 3 cut(s) 30, 197, 365
BsmFI GGGAC 1 cut(s) 469
BsmI GAATGC 1 cut(s) 856
BsnI GGCC 2 cut(s) 286, 961
Bso31I GGTCTC 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 160, 619
Bsp143I GATC 5 cut(s) 517, 643, 760, 883, 937
BspACI CCGC 2 cut(s) 875, 935
BspANI GGCC 2 cut(s) 286, 961
BspCNI CTCAG 4 cut(s) 372, 415, 573, 826
BspFNI CGCG 1 cut(s) 935
BspHI TCATGA 1 cut(s) 195
BspPI GGATC 2 cut(s) 651, 945
BspQI GCTCTTC 1 cut(s) 587
BspTI CTTAAG 1 cut(s) 413
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 3 cut(s) 666, 705, 789
BsrI ACTGG 3 cut(s) 78, 481, 712
BssECI CCNNGG 4 cut(s) 294, 490, 830, 909
BssMI GATC 5 cut(s) 517, 643, 760, 883, 937
BssSI CACGAG 1 cut(s) 453
BssT1I CCWWGG 2 cut(s) 294, 830
Bst2BI CACGAG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 2 cut(s) 504, 950
Bst6I CTCTTC 4 cut(s) 33, 587, 659, 708
BstAFI CTTAAG 1 cut(s) 413
BstC8I GCNNGC 3 cut(s) 315, 735, 979
BstDEI CTNAG 4 cut(s) 380, 402, 560, 813
BstF5I GGATG 2 cut(s) 570, 877
BstFNI CGCG 1 cut(s) 935
BstHHI GCGC 2 cut(s) 319, 856
BstKTI GATC 5 cut(s) 520, 646, 763, 886, 940
BstMAI GTCTC 3 cut(s) 30, 197, 365
BstMBI GATC 5 cut(s) 517, 643, 760, 883, 937
BstMWI GCNNNNNNNGC 3 cut(s) 164, 418, 687
BstNI CCWGG 1 cut(s) 491
BstNSI RCATGY 2 cut(s) 737, 769
BstSCI CCNGG 3 cut(s) 435, 489, 908
BstSFI CTRYAG 1 cut(s) 253
BstUI CGCG 1 cut(s) 935
BstV2I GAAGAC 1 cut(s) 710
Bsu36I CCTNAGG 1 cut(s) 380
BsuRI GGCC 2 cut(s) 286, 961
BtsCI GGATG 2 cut(s) 570, 877
BtsI GCAGTG 1 cut(s) 869
BtsIMutI CAGTG 2 cut(s) 500, 869
Cac8I GCNNGC 3 cut(s) 315, 735, 979
CaiI CAGNNNCTG 1 cut(s) 635
CciI TCATGA 1 cut(s) 195
CfoI GCGC 2 cut(s) 319, 856
Csp6I GTAC 1 cut(s) 951
CviAII CATG 9 cut(s) 112, 196, 331, 694, 734, 766, 775, 838, 844
CviQI GTAC 1 cut(s) 951
DdeI CTNAG 4 cut(s) 380, 402, 560, 813
DpnI GATC 5 cut(s) 519, 645, 762, 885, 939
DpnII GATC 5 cut(s) 517, 643, 760, 883, 937
DraI TTTAAA 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 959
Eam1104I CTCTTC 4 cut(s) 33, 587, 659, 708
EarI CTCTTC 4 cut(s) 33, 587, 659, 708
Eco130I CCWWGG 2 cut(s) 294, 830
Eco31I GGTCTC 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 14, 566
Eco81I CCTNAGG 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 489
EcoT14I CCWWGG 2 cut(s) 294, 830
EcoT22I ATGCAT 1 cut(s) 771
ErhI CCWWGG 2 cut(s) 294, 830
FaeI CATG 9 cut(s) 115, 199, 334, 697, 737, 769, 778, 841, 847
FaqI GGGAC 1 cut(s) 469
FatI CATG 9 cut(s) 111, 195, 330, 693, 733, 765, 774, 837, 843
FauNDI CATATG 1 cut(s) 897
FbaI TGATCA 1 cut(s) 760
FokI GGATG 2 cut(s) 577, 864
FspBI CTAG 2 cut(s) 107, 117
FspI TGCGCA 1 cut(s) 318
GlaI GCGC 2 cut(s) 318, 855
GsaI CCCAGC 2 cut(s) 274, 529
GsuI CTGGAG 2 cut(s) 473, 957
HaeIII GGCC 2 cut(s) 286, 961
HapII CCGG 2 cut(s) 436, 909
HhaI GCGC 2 cut(s) 319, 856
Hin1II CATG 9 cut(s) 115, 199, 334, 697, 737, 769, 778, 841, 847
Hin6I GCGC 2 cut(s) 317, 854
HinP1I GCGC 2 cut(s) 317, 854
HinfI GANTC 5 cut(s) 23, 266, 300, 364, 390
HpaII CCGG 2 cut(s) 436, 909
HphI GGTGA 5 cut(s) 139, 208, 217, 373, 722
Hpy166II GTNNAC 2 cut(s) 212, 906
Hpy188I TCNGA 2 cut(s) 508, 816
Hpy188III TCNNGA 7 cut(s) 196, 325, 368, 379, 404, 562, 881
Hpy8I GTNNAC 2 cut(s) 212, 906
HpyAV CCTTC 6 cut(s) 71, 80, 118, 181, 297, 541
HpyCH4III ACNGT 2 cut(s) 504, 950
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 8 cut(s) 85, 610, 638, 730, 737, 769, 787, 802
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 418, 687
HpyF3I CTNAG 4 cut(s) 380, 402, 560, 813
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 9 cut(s) 115, 199, 334, 697, 737, 769, 778, 841, 847
HspAI GCGC 2 cut(s) 317, 854
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 5 cut(s) 517, 643, 760, 883, 937
LguI GCTCTTC 1 cut(s) 587
LmnI GCTCC 3 cut(s) 343, 614, 795
LweI GCATC 4 cut(s) 226, 789, 886, 912
MaeI CTAG 2 cut(s) 107, 117
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 2 cut(s) 227, 552
MalI GATC 5 cut(s) 519, 645, 762, 885, 939
MboI GATC 5 cut(s) 517, 643, 760, 883, 937
MboII GAAGA 9 cut(s) 20, 65, 196, 367, 580, 604, 676, 715, 725
MhlI GDGCHC 2 cut(s) 160, 619
MlsI TGGCCA 1 cut(s) 961
MluCI AATT 2 cut(s) 279, 988
MluNI TGGCCA 1 cut(s) 961
MlyI GAGTC 3 cut(s) 32, 260, 309
MmeI TCCRAC 1 cut(s) 328
Mox20I TGGCCA 1 cut(s) 961
Mph1103I ATGCAT 1 cut(s) 771
MscI TGGCCA 1 cut(s) 961
MseI TTAA 4 cut(s) 11, 414, 576, 987
MslI CAYNNNNRTG 2 cut(s) 698, 842
Msp20I TGGCCA 1 cut(s) 961
MspA1I CMGCKG 2 cut(s) 632, 977
MspCI CTTAAG 1 cut(s) 413
MspI CCGG 2 cut(s) 436, 909
MspR9I CCNGG 3 cut(s) 437, 491, 910
Mva1269I GAATGC 1 cut(s) 856
MvaI CCWGG 1 cut(s) 491
MvnI CGCG 1 cut(s) 935
MwoI GCNNNNNNNGC 3 cut(s) 164, 418, 687
NciI CCSGG 2 cut(s) 437, 910
NdeI CATATG 1 cut(s) 897
NdeII GATC 5 cut(s) 517, 643, 760, 883, 937
NlaIII CATG 9 cut(s) 115, 199, 334, 697, 737, 769, 778, 841, 847
NmeAIII GCCGAG 1 cut(s) 501
NmuCI GTSAC 1 cut(s) 227
NsbI TGCGCA 1 cut(s) 318
NsiI ATGCAT 1 cut(s) 771
NspI RCATGY 2 cut(s) 737, 769
PaeI GCATGC 1 cut(s) 737
PagI TCATGA 1 cut(s) 195
PciSI GCTCTTC 1 cut(s) 587
PctI GAATGC 1 cut(s) 856
PfeI GAWTC 2 cut(s) 364, 390
PflFI GACNNNGTC 1 cut(s) 502
PleI GAGTC 3 cut(s) 31, 260, 308
PpsI GAGTC 3 cut(s) 31, 260, 308
Psp6I CCWGG 1 cut(s) 489
PspFI CCCAGC 2 cut(s) 270, 525
PspGI CCWGG 1 cut(s) 489
PstNI CAGNNNCTG 1 cut(s) 635
PsyI GACNNNGTC 1 cut(s) 502
PvuII CAGCTG 2 cut(s) 632, 977
RsaI GTAC 1 cut(s) 952
RsaNI GTAC 1 cut(s) 951
RseI CAYNNNNRTG 2 cut(s) 698, 842
SapI GCTCTTC 1 cut(s) 587
SaqAI TTAA 4 cut(s) 11, 414, 576, 987
Sau3AI GATC 5 cut(s) 517, 643, 760, 883, 937
ScaI AGTACT 1 cut(s) 952
SchI GAGTC 3 cut(s) 32, 260, 309
ScrFI CCNGG 3 cut(s) 437, 491, 910
SduI GDGCHC 2 cut(s) 160, 619
SfaNI GCATC 4 cut(s) 226, 789, 886, 912
SfcI CTRYAG 1 cut(s) 253
SmiMI CAYNNNNRTG 2 cut(s) 698, 842
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
SphI GCATGC 1 cut(s) 737
Sse9I AATT 2 cut(s) 279, 988
SsiI CCGC 2 cut(s) 875, 935
SspMI CTAG 2 cut(s) 107, 117
StyD4I CCNGG 3 cut(s) 435, 489, 908
StyI CCWWGG 2 cut(s) 294, 830
TaaI ACNGT 2 cut(s) 504, 950
TaiI ACGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 160
TasI AATT 2 cut(s) 279, 988
TatI WGTACW 1 cut(s) 950
TauI GCSGC 1 cut(s) 877
TfiI GAWTC 2 cut(s) 364, 390
Tru1I TTAA 4 cut(s) 11, 414, 576, 987
Tru9I TTAA 4 cut(s) 11, 414, 576, 987
TscAI CASTG 2 cut(s) 507, 876
TseFI GTSAC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 8 cut(s) 53, 83, 212, 581, 677, 716, 826, 863
TspGWI ACGGA 1 cut(s) 656
TspRI CASTG 2 cut(s) 507, 876
Tth111I GACNNNGTC 1 cut(s) 502
Vha464I CTTAAG 1 cut(s) 413
XapI RAATTY 1 cut(s) 279
XceI RCATGY 2 cut(s) 737, 769
XcmI CCANNNNNNNNNTGG 2 cut(s) 337, 473
XspI CTAG 2 cut(s) 107, 117
ZrmI AGTACT 1 cut(s) 952
Zsp2I ATGCAT 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.