Agamous-like MADS-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SRF-TF | PF00319 | 47 - 88 | 1.1e-17 | SRF-type transcription factor (DNA-binding and dimerisation domain) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 318 |
| AccII | CGCG | 1 cut(s) | 935 |
| AciI | CCGC | 2 cut(s) | 875, 935 |
| AclWI | GGATC | 2 cut(s) | 651, 945 |
| AcoI | YGGCCR | 1 cut(s) | 959 |
| AcsI | RAATTY | 1 cut(s) | 279 |
| AcuI | CTGAAG | 2 cut(s) | 14, 566 |
| AfaI | GTAC | 1 cut(s) | 952 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 442, 747, 977 |
| AflII | CTTAAG | 1 cut(s) | 413 |
| AflIII | ACRYGT | 1 cut(s) | 307 |
| AgsI | TTSAA | 1 cut(s) | 325 |
| AjnI | CCWGG | 1 cut(s) | 489 |
| AluBI | AGCT | 5 cut(s) | 412, 632, 790, 812, 977 |
| AluI | AGCT | 5 cut(s) | 412, 632, 790, 812, 977 |
| Alw21I | GWGCWC | 2 cut(s) | 160, 619 |
| Alw26I | GTCTC | 3 cut(s) | 30, 197, 365 |
| AlwI | GGATC | 2 cut(s) | 651, 945 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 635 |
| AoxI | GGCC | 2 cut(s) | 284, 959 |
| ApoI | RAATTY | 1 cut(s) | 279 |
| AspLEI | GCGC | 2 cut(s) | 319, 856 |
| AsuC2I | CCSGG | 2 cut(s) | 437, 910 |
| AsuHPI | GGTGA | 5 cut(s) | 139, 208, 217, 373, 722 |
| AxyI | CCTNAGG | 1 cut(s) | 380 |
| BalI | TGGCCA | 1 cut(s) | 961 |
| BauI | CACGAG | 1 cut(s) | 453 |
| BbsI | GAAGAC | 1 cut(s) | 710 |
| Bbv12I | GWGCWC | 2 cut(s) | 160, 619 |
| BccI | CCATC | 3 cut(s) | 352, 442, 799 |
| BciT130I | CCWGG | 1 cut(s) | 491 |
| BclI | TGATCA | 1 cut(s) | 760 |
| BcnI | CCSGG | 2 cut(s) | 437, 910 |
| BcoDI | GTCTC | 3 cut(s) | 30, 197, 365 |
| BfaI | CTAG | 2 cut(s) | 107, 117 |
| BfmI | CTRYAG | 1 cut(s) | 253 |
| BfrI | CTTAAG | 1 cut(s) | 413 |
| BmcAI | AGTACT | 1 cut(s) | 952 |
| Bme1390I | CCNGG | 3 cut(s) | 437, 491, 910 |
| BmrFI | CCNGG | 3 cut(s) | 437, 491, 910 |
| BmrI | ACTGGG | 1 cut(s) | 72 |
| BmsI | GCATC | 4 cut(s) | 226, 789, 886, 912 |
| BmuI | ACTGGG | 1 cut(s) | 72 |
| BpiI | GAAGAC | 1 cut(s) | 710 |
| BpmI | CTGGAG | 2 cut(s) | 473, 957 |
| Bpu10I | CCTNAGC | 1 cut(s) | 402 |
| BpuMI | CCSGG | 2 cut(s) | 437, 910 |
| BsaBI | GATNNNNATC | 1 cut(s) | 888 |
| BsaI | GGTCTC | 1 cut(s) | 197 |
| BsaJI | CCNNGG | 4 cut(s) | 294, 490, 830, 909 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 442, 747, 977 |
| Bse1I | ACTGG | 3 cut(s) | 78, 481, 712 |
| Bse21I | CCTNAGG | 1 cut(s) | 380 |
| Bse3DI | GCAATG | 3 cut(s) | 666, 705, 789 |
| Bse8I | GATNNNNATC | 1 cut(s) | 888 |
| BseBI | CCWGG | 1 cut(s) | 491 |
| BseDI | CCNNGG | 4 cut(s) | 294, 490, 830, 909 |
| BseGI | GGATG | 2 cut(s) | 570, 877 |
| BseJI | GATNNNNATC | 1 cut(s) | 888 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 442, 747, 977 |
| BseMI | GCAATG | 3 cut(s) | 666, 705, 789 |
| BseMII | CTCAG | 4 cut(s) | 371, 416, 574, 827 |
| BseNI | ACTGG | 3 cut(s) | 78, 481, 712 |
| BseRI | GAGGAG | 2 cut(s) | 596, 960 |
| BseYI | CCCAGC | 2 cut(s) | 270, 525 |
| Bsh1236I | CGCG | 1 cut(s) | 935 |
| BshFI | GGCC | 2 cut(s) | 286, 961 |
| BsiHKAI | GWGCWC | 2 cut(s) | 160, 619 |
| BsiSI | CCGG | 2 cut(s) | 436, 909 |
| BslFI | GGGAC | 1 cut(s) | 469 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 442, 747, 977 |
| BsmAI | GTCTC | 3 cut(s) | 30, 197, 365 |
| BsmFI | GGGAC | 1 cut(s) | 469 |
| BsmI | GAATGC | 1 cut(s) | 856 |
| BsnI | GGCC | 2 cut(s) | 286, 961 |
| Bso31I | GGTCTC | 1 cut(s) | 197 |
| Bsp1286I | GDGCHC | 2 cut(s) | 160, 619 |
| Bsp143I | GATC | 5 cut(s) | 517, 643, 760, 883, 937 |
| BspACI | CCGC | 2 cut(s) | 875, 935 |
| BspANI | GGCC | 2 cut(s) | 286, 961 |
| BspCNI | CTCAG | 4 cut(s) | 372, 415, 573, 826 |
| BspFNI | CGCG | 1 cut(s) | 935 |
| BspHI | TCATGA | 1 cut(s) | 195 |
| BspPI | GGATC | 2 cut(s) | 651, 945 |
| BspQI | GCTCTTC | 1 cut(s) | 587 |
| BspTI | CTTAAG | 1 cut(s) | 413 |
| BspTNI | GGTCTC | 1 cut(s) | 197 |
| BsrDI | GCAATG | 3 cut(s) | 666, 705, 789 |
| BsrI | ACTGG | 3 cut(s) | 78, 481, 712 |
| BssECI | CCNNGG | 4 cut(s) | 294, 490, 830, 909 |
| BssMI | GATC | 5 cut(s) | 517, 643, 760, 883, 937 |
| BssSI | CACGAG | 1 cut(s) | 453 |
| BssT1I | CCWWGG | 2 cut(s) | 294, 830 |
| Bst2BI | CACGAG | 1 cut(s) | 453 |
| Bst2UI | CCWGG | 1 cut(s) | 491 |
| Bst4CI | ACNGT | 2 cut(s) | 504, 950 |
| Bst6I | CTCTTC | 4 cut(s) | 33, 587, 659, 708 |
| BstAFI | CTTAAG | 1 cut(s) | 413 |
| BstC8I | GCNNGC | 3 cut(s) | 315, 735, 979 |
| BstDEI | CTNAG | 4 cut(s) | 380, 402, 560, 813 |
| BstF5I | GGATG | 2 cut(s) | 570, 877 |
| BstFNI | CGCG | 1 cut(s) | 935 |
| BstHHI | GCGC | 2 cut(s) | 319, 856 |
| BstKTI | GATC | 5 cut(s) | 520, 646, 763, 886, 940 |
| BstMAI | GTCTC | 3 cut(s) | 30, 197, 365 |
| BstMBI | GATC | 5 cut(s) | 517, 643, 760, 883, 937 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 164, 418, 687 |
| BstNI | CCWGG | 1 cut(s) | 491 |
| BstNSI | RCATGY | 2 cut(s) | 737, 769 |
| BstSCI | CCNGG | 3 cut(s) | 435, 489, 908 |
| BstSFI | CTRYAG | 1 cut(s) | 253 |
| BstUI | CGCG | 1 cut(s) | 935 |
| BstV2I | GAAGAC | 1 cut(s) | 710 |
| Bsu36I | CCTNAGG | 1 cut(s) | 380 |
| BsuRI | GGCC | 2 cut(s) | 286, 961 |
| BtsCI | GGATG | 2 cut(s) | 570, 877 |
| BtsI | GCAGTG | 1 cut(s) | 869 |
| BtsIMutI | CAGTG | 2 cut(s) | 500, 869 |
| Cac8I | GCNNGC | 3 cut(s) | 315, 735, 979 |
| CaiI | CAGNNNCTG | 1 cut(s) | 635 |
| CciI | TCATGA | 1 cut(s) | 195 |
| CfoI | GCGC | 2 cut(s) | 319, 856 |
| Csp6I | GTAC | 1 cut(s) | 951 |
| CviAII | CATG | 9 cut(s) | 112, 196, 331, 694, 734, 766, 775, 838, 844 |
| CviQI | GTAC | 1 cut(s) | 951 |
| DdeI | CTNAG | 4 cut(s) | 380, 402, 560, 813 |
| DpnI | GATC | 5 cut(s) | 519, 645, 762, 885, 939 |
| DpnII | GATC | 5 cut(s) | 517, 643, 760, 883, 937 |
| DraI | TTTAAA | 1 cut(s) | 12 |
| EaeI | YGGCCR | 1 cut(s) | 959 |
| Eam1104I | CTCTTC | 4 cut(s) | 33, 587, 659, 708 |
| EarI | CTCTTC | 4 cut(s) | 33, 587, 659, 708 |
| Eco130I | CCWWGG | 2 cut(s) | 294, 830 |
| Eco31I | GGTCTC | 1 cut(s) | 197 |
| Eco57I | CTGAAG | 2 cut(s) | 14, 566 |
| Eco81I | CCTNAGG | 1 cut(s) | 380 |
| EcoRII | CCWGG | 1 cut(s) | 489 |
| EcoT14I | CCWWGG | 2 cut(s) | 294, 830 |
| EcoT22I | ATGCAT | 1 cut(s) | 771 |
| ErhI | CCWWGG | 2 cut(s) | 294, 830 |
| FaeI | CATG | 9 cut(s) | 115, 199, 334, 697, 737, 769, 778, 841, 847 |
| FaqI | GGGAC | 1 cut(s) | 469 |
| FatI | CATG | 9 cut(s) | 111, 195, 330, 693, 733, 765, 774, 837, 843 |
| FauNDI | CATATG | 1 cut(s) | 897 |
| FbaI | TGATCA | 1 cut(s) | 760 |
| FokI | GGATG | 2 cut(s) | 577, 864 |
| FspBI | CTAG | 2 cut(s) | 107, 117 |
| FspI | TGCGCA | 1 cut(s) | 318 |
| GlaI | GCGC | 2 cut(s) | 318, 855 |
| GsaI | CCCAGC | 2 cut(s) | 274, 529 |
| GsuI | CTGGAG | 2 cut(s) | 473, 957 |
| HaeIII | GGCC | 2 cut(s) | 286, 961 |
| HapII | CCGG | 2 cut(s) | 436, 909 |
| HhaI | GCGC | 2 cut(s) | 319, 856 |
| Hin1II | CATG | 9 cut(s) | 115, 199, 334, 697, 737, 769, 778, 841, 847 |
| Hin6I | GCGC | 2 cut(s) | 317, 854 |
| HinP1I | GCGC | 2 cut(s) | 317, 854 |
| HinfI | GANTC | 5 cut(s) | 23, 266, 300, 364, 390 |
| HpaII | CCGG | 2 cut(s) | 436, 909 |
| HphI | GGTGA | 5 cut(s) | 139, 208, 217, 373, 722 |
| Hpy166II | GTNNAC | 2 cut(s) | 212, 906 |
| Hpy188I | TCNGA | 2 cut(s) | 508, 816 |
| Hpy188III | TCNNGA | 7 cut(s) | 196, 325, 368, 379, 404, 562, 881 |
| Hpy8I | GTNNAC | 2 cut(s) | 212, 906 |
| HpyAV | CCTTC | 6 cut(s) | 71, 80, 118, 181, 297, 541 |
| HpyCH4III | ACNGT | 2 cut(s) | 504, 950 |
| HpyCH4IV | ACGT | 1 cut(s) | 307 |
| HpyCH4V | TGCA | 8 cut(s) | 85, 610, 638, 730, 737, 769, 787, 802 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 164, 418, 687 |
| HpyF3I | CTNAG | 4 cut(s) | 380, 402, 560, 813 |
| HpySE526I | ACGT | 1 cut(s) | 307 |
| Hsp92II | CATG | 9 cut(s) | 115, 199, 334, 697, 737, 769, 778, 841, 847 |
| HspAI | GCGC | 2 cut(s) | 317, 854 |
| Ksp22I | TGATCA | 1 cut(s) | 760 |
| Kzo9I | GATC | 5 cut(s) | 517, 643, 760, 883, 937 |
| LguI | GCTCTTC | 1 cut(s) | 587 |
| LmnI | GCTCC | 3 cut(s) | 343, 614, 795 |
| LweI | GCATC | 4 cut(s) | 226, 789, 886, 912 |
| MaeI | CTAG | 2 cut(s) | 107, 117 |
| MaeII | ACGT | 1 cut(s) | 307 |
| MaeIII | GTNAC | 2 cut(s) | 227, 552 |
| MalI | GATC | 5 cut(s) | 519, 645, 762, 885, 939 |
| MboI | GATC | 5 cut(s) | 517, 643, 760, 883, 937 |
| MboII | GAAGA | 9 cut(s) | 20, 65, 196, 367, 580, 604, 676, 715, 725 |
| MhlI | GDGCHC | 2 cut(s) | 160, 619 |
| MlsI | TGGCCA | 1 cut(s) | 961 |
| MluCI | AATT | 2 cut(s) | 279, 988 |
| MluNI | TGGCCA | 1 cut(s) | 961 |
| MlyI | GAGTC | 3 cut(s) | 32, 260, 309 |
| MmeI | TCCRAC | 1 cut(s) | 328 |
| Mox20I | TGGCCA | 1 cut(s) | 961 |
| Mph1103I | ATGCAT | 1 cut(s) | 771 |
| MscI | TGGCCA | 1 cut(s) | 961 |
| MseI | TTAA | 4 cut(s) | 11, 414, 576, 987 |
| MslI | CAYNNNNRTG | 2 cut(s) | 698, 842 |
| Msp20I | TGGCCA | 1 cut(s) | 961 |
| MspA1I | CMGCKG | 2 cut(s) | 632, 977 |
| MspCI | CTTAAG | 1 cut(s) | 413 |
| MspI | CCGG | 2 cut(s) | 436, 909 |
| MspR9I | CCNGG | 3 cut(s) | 437, 491, 910 |
| Mva1269I | GAATGC | 1 cut(s) | 856 |
| MvaI | CCWGG | 1 cut(s) | 491 |
| MvnI | CGCG | 1 cut(s) | 935 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 164, 418, 687 |
| NciI | CCSGG | 2 cut(s) | 437, 910 |
| NdeI | CATATG | 1 cut(s) | 897 |
| NdeII | GATC | 5 cut(s) | 517, 643, 760, 883, 937 |
| NlaIII | CATG | 9 cut(s) | 115, 199, 334, 697, 737, 769, 778, 841, 847 |
| NmeAIII | GCCGAG | 1 cut(s) | 501 |
| NmuCI | GTSAC | 1 cut(s) | 227 |
| NsbI | TGCGCA | 1 cut(s) | 318 |
| NsiI | ATGCAT | 1 cut(s) | 771 |
| NspI | RCATGY | 2 cut(s) | 737, 769 |
| PaeI | GCATGC | 1 cut(s) | 737 |
| PagI | TCATGA | 1 cut(s) | 195 |
| PciSI | GCTCTTC | 1 cut(s) | 587 |
| PctI | GAATGC | 1 cut(s) | 856 |
| PfeI | GAWTC | 2 cut(s) | 364, 390 |
| PflFI | GACNNNGTC | 1 cut(s) | 502 |
| PleI | GAGTC | 3 cut(s) | 31, 260, 308 |
| PpsI | GAGTC | 3 cut(s) | 31, 260, 308 |
| Psp6I | CCWGG | 1 cut(s) | 489 |
| PspFI | CCCAGC | 2 cut(s) | 270, 525 |
| PspGI | CCWGG | 1 cut(s) | 489 |
| PstNI | CAGNNNCTG | 1 cut(s) | 635 |
| PsyI | GACNNNGTC | 1 cut(s) | 502 |
| PvuII | CAGCTG | 2 cut(s) | 632, 977 |
| RsaI | GTAC | 1 cut(s) | 952 |
| RsaNI | GTAC | 1 cut(s) | 951 |
| RseI | CAYNNNNRTG | 2 cut(s) | 698, 842 |
| SapI | GCTCTTC | 1 cut(s) | 587 |
| SaqAI | TTAA | 4 cut(s) | 11, 414, 576, 987 |
| Sau3AI | GATC | 5 cut(s) | 517, 643, 760, 883, 937 |
| ScaI | AGTACT | 1 cut(s) | 952 |
| SchI | GAGTC | 3 cut(s) | 32, 260, 309 |
| ScrFI | CCNGG | 3 cut(s) | 437, 491, 910 |
| SduI | GDGCHC | 2 cut(s) | 160, 619 |
| SfaNI | GCATC | 4 cut(s) | 226, 789, 886, 912 |
| SfcI | CTRYAG | 1 cut(s) | 253 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 698, 842 |
| SmlI | CTYRAG | 1 cut(s) | 413 |
| SmoI | CTYRAG | 1 cut(s) | 413 |
| SphI | GCATGC | 1 cut(s) | 737 |
| Sse9I | AATT | 2 cut(s) | 279, 988 |
| SsiI | CCGC | 2 cut(s) | 875, 935 |
| SspMI | CTAG | 2 cut(s) | 107, 117 |
| StyD4I | CCNGG | 3 cut(s) | 435, 489, 908 |
| StyI | CCWWGG | 2 cut(s) | 294, 830 |
| TaaI | ACNGT | 2 cut(s) | 504, 950 |
| TaiI | ACGT | 1 cut(s) | 310 |
| TaqI | TCGA | 1 cut(s) | 160 |
| TasI | AATT | 2 cut(s) | 279, 988 |
| TatI | WGTACW | 1 cut(s) | 950 |
| TauI | GCSGC | 1 cut(s) | 877 |
| TfiI | GAWTC | 2 cut(s) | 364, 390 |
| Tru1I | TTAA | 4 cut(s) | 11, 414, 576, 987 |
| Tru9I | TTAA | 4 cut(s) | 11, 414, 576, 987 |
| TscAI | CASTG | 2 cut(s) | 507, 876 |
| TseFI | GTSAC | 1 cut(s) | 227 |
| Tsp45I | GTSAC | 1 cut(s) | 227 |
| TspDTI | ATGAA | 8 cut(s) | 53, 83, 212, 581, 677, 716, 826, 863 |
| TspGWI | ACGGA | 1 cut(s) | 656 |
| TspRI | CASTG | 2 cut(s) | 507, 876 |
| Tth111I | GACNNNGTC | 1 cut(s) | 502 |
| Vha464I | CTTAAG | 1 cut(s) | 413 |
| XapI | RAATTY | 1 cut(s) | 279 |
| XceI | RCATGY | 2 cut(s) | 737, 769 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 337, 473 |
| XspI | CTAG | 2 cut(s) | 107, 117 |
| ZrmI | AGTACT | 1 cut(s) | 952 |
| Zsp2I | ATGCAT | 1 cut(s) | 771 |