Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014922

Physical Location & Seq

Genomic Coordinates Reverse (-)

12928133 .. 12930244

Gene Structure 2112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGAAGCTGGACTGCTTACCTTATCAGTCTACTGTATGTTGAGTACAGAACTAGAAAGGAGAGAGAAAAGGTCGATTTCAGAAACCACGTAATTCAGTGGTTTGAAGTTCTTGATGGACTTCTGGGAAAGCACTGGAGAAATTTAGGCCTCTTTTTCAACTGTACTTTTCTTCTGTTCGGATCTGTCATTCAGTTAATCGCTTGTGCAAGTAACATCTACTACATAAACGACAACCTCGACAAGAGAACTTGGACTTATATCTTTGGTGCTTGCTGTGCTACAACTGTCTTCATCCCTTCATTTCATAATTACAGAATCTGGTCATTCTTGGGTCTTATTATGACTACTTACACTGCATGGTACCTCACCATTGCTTCCCTCATCCATGGACAGGTTGAAGGAGTGAAGCACTCAGGTCCAACCACGATGGTTCTCTACTTCACTGGAGCTACCAACATTCTCTACACTTTTGGTGGACATGCTGTTACAGTGGAGATTATGCATGCAATGTGGAAGCCACAGAAATTCAAGATGATATACTTGATGGCAACACTTTATGTGCTGACCTTAACTTTACCATCAGCTTCTGCTGTGTACTGGGCTTTTTGGAGACGCCCTCTTGACTCATTCGAACGCTCTCGCTTTGCTTCCGAGGACCAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009926 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010328 GO:0010817 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0044464 GO:0046942 GO:0046943 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

222

Amino Acids

25.91

Weight (kDa)

9.0

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	3 - 203	5.8e-38	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77690
fragaria_vesca	FvH4_2g26410
malus_domestica	MD15G1355600.v1.1
prunus_persica	Prupe.1G503100_v2.0.a1
pyrus_communis	pycom08g14440 pycom15g31780
rosa_chinensis	RchiOBHm_Chr6g0295041
rosa_laevigata	RLG00000011824
rosa_multiflora	Rmu_sc0008767.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172780
rosa_rugosa	Rorug06G0249000
rosa_samantha	Rh6AG362000 Rh6BG369600 Rh6CG376200 Rh6DG362800
rosa_wichuraiana	Rw6G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	31
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	2 cut(s)	142, 527
AcyI	GRCGYC	1 cut(s)	616
AfaI	GTAC	4 cut(s)	47, 166, 365, 599
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	4 cut(s)	107, 160, 401, 532
AluBI	AGCT	3 cut(s)	9, 452, 587
AluI	AGCT	3 cut(s)	9, 452, 587
Alw26I	GTCTC	1 cut(s)	607
AlwI	GGATC	1 cut(s)	190
AlwNI	CAGNNNCTG	2 cut(s)	321, 590
AoxI	GGCC	1 cut(s)	148
ApoI	RAATTY	2 cut(s)	142, 527
Asp718I	GGTACC	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	419, 658
AsuHPI	GGTGA	1 cut(s)	361
AsuII	TTCGAA	1 cut(s)	633
AvaII	GGWCC	2 cut(s)	419, 658
BanI	GGYRCC	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	283
BccI	CCATC	4 cut(s)	110, 424, 541, 589
BcoDI	GTCTC	1 cut(s)	607
BfaI	CTAG	1 cut(s)	54
Bme18I	GGWCC	2 cut(s)	419, 658
BmgT120I	GGNCC	2 cut(s)	419, 658
BmiI	GGNNCC	1 cut(s)	365
BmrI	ACTGGG	1 cut(s)	610
BmuI	ACTGGG	1 cut(s)	610
BpiI	GAAGAC	1 cut(s)	283
BplI	GAGNNNNNCTC	2 cut(s)	604, 636
BpmI	CTGGAG	2 cut(s)	157, 468
Bpu14I	TTCGAA	1 cut(s)	633
BsaAI	YACGTR	1 cut(s)	91
BsaHI	GRCGYC	1 cut(s)	616
BsaJI	CCNNGG	2 cut(s)	388, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse1I	ACTGG	3 cut(s)	140, 451, 605
Bse3DI	GCAATG	2 cut(s)	372, 516
BseDI	CCNNGG	2 cut(s)	388, 654
BseGI	GGATG	2 cut(s)	294, 384
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMI	GCAATG	2 cut(s)	372, 516
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	3 cut(s)	140, 451, 605
BshFI	GGCC	1 cut(s)	150
BshNI	GGYRCC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	607
BsmBI	CGTCTC	1 cut(s)	607
BsnI	GGCC	1 cut(s)	150
Bsp119I	TTCGAA	1 cut(s)	633
Bsp143I	GATC	1 cut(s)	182
Bsp19I	CCATGG	1 cut(s)	388
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	428
BspLI	GGNNCC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	190
BspT104I	TTCGAA	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	363
BsrDI	GCAATG	2 cut(s)	372, 516
BsrI	ACTGG	3 cut(s)	140, 451, 605
BssECI	CCNNGG	2 cut(s)	388, 654
BssMI	GATC	1 cut(s)	182
BssNI	GRCGYC	1 cut(s)	616
BssT1I	CCWWGG	1 cut(s)	388
Bst4CI	ACNGT	4 cut(s)	36, 164, 289, 493
BstACI	GRCGYC	1 cut(s)	616
BstBAI	YACGTR	1 cut(s)	91
BstBI	TTCGAA	1 cut(s)	633
BstC8I	GCNNGC	2 cut(s)	274, 507
BstDEI	CTNAG	1 cut(s)	415
BstDSI	CCRYGG	1 cut(s)	388
BstF5I	GGATG	2 cut(s)	294, 384
BstKTI	GATC	1 cut(s)	185
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNSI	RCATGY	2 cut(s)	485, 509
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	388
BtsCI	GGATG	2 cut(s)	294, 384
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	5 cut(s)	104, 133, 354, 444, 498
Cac8I	GCNNGC	2 cut(s)	274, 507
CaiI	CAGNNNCTG	2 cut(s)	321, 590
Cfr13I	GGNCC	2 cut(s)	419, 658
CseI	GACGC	1 cut(s)	624
Csp6I	GTAC	4 cut(s)	46, 165, 364, 598
CviAII	CATG	4 cut(s)	360, 389, 482, 506
CviJI	RGCY	6 cut(s)	9, 150, 452, 520, 587, 605
CviKI_1	RGCY	6 cut(s)	9, 150, 452, 520, 587, 605
CviQI	GTAC	4 cut(s)	46, 165, 364, 598
DdeI	CTNAG	1 cut(s)	415
DpnI	GATC	1 cut(s)	184
DpnII	GATC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	388
Eco147I	AGGCCT	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	419, 658
EcoT14I	CCWWGG	1 cut(s)	388
EcoT22I	ATGCAT	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	388
Esp3I	CGTCTC	1 cut(s)	607
FaeI	CATG	4 cut(s)	363, 392, 485, 509
FatI	CATG	4 cut(s)	359, 388, 481, 505
FblI	GTMKAC	1 cut(s)	31
FokI	GGATG	2 cut(s)	281, 371
FspBI	CTAG	1 cut(s)	54
GsuI	CTGGAG	2 cut(s)	157, 468
HaeIII	GGCC	1 cut(s)	150
HgaI	GACGC	1 cut(s)	624
Hin1I	GRCGYC	1 cut(s)	616
Hin1II	CATG	4 cut(s)	363, 392, 485, 509
HinfI	GANTC	2 cut(s)	318, 626
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	3 cut(s)	32, 479, 598
Hpy188I	TCNGA	3 cut(s)	83, 182, 655
Hpy188III	TCNNGA	3 cut(s)	113, 532, 623
Hpy8I	GTNNAC	3 cut(s)	32, 479, 598
HpyAV	CCTTC	2 cut(s)	309, 395
HpyCH4III	ACNGT	4 cut(s)	36, 164, 289, 493
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	4 cut(s)	209, 359, 505, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	415
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	616
Hsp92II	CATG	4 cut(s)	363, 392, 485, 509
KpnI	GGTACC	1 cut(s)	367
Kzo9I	GATC	1 cut(s)	182
LmnI	GCTCC	1 cut(s)	449
LpnPI	CCDG	7 cut(s)	110, 121, 307, 380, 402, 432, 586
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	212, 487
MalI	GATC	1 cut(s)	184
MboI	GATC	1 cut(s)	182
MboII	GAAGA	2 cut(s)	164, 283
MflI	RGATCY	1 cut(s)	182
MluCI	AATT	4 cut(s)	93, 142, 310, 527
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	446
MnlI	CCTC	6 cut(s)	161, 248, 377, 392, 630, 649
Mph1103I	ATGCAT	1 cut(s)	507
MseI	TTAA	2 cut(s)	197, 572
MwoI	GCNNNNNNNGC	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	1 cut(s)	182
NlaIII	CATG	4 cut(s)	363, 392, 485, 509
NlaIV	GGNNCC	1 cut(s)	365
NsiI	ATGCAT	1 cut(s)	507
NspI	RCATGY	2 cut(s)	485, 509
NspV	TTCGAA	1 cut(s)	633
PaeI	GCATGC	1 cut(s)	509
PceI	AGGCCT	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	318
PleI	GAGTC	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	620
Ppu21I	YACGTR	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	365
PspPI	GGNCC	2 cut(s)	419, 658
PstNI	CAGNNNCTG	2 cut(s)	321, 590
PsuI	RGATCY	1 cut(s)	182
RsaI	GTAC	4 cut(s)	47, 166, 365, 599
RsaNI	GTAC	4 cut(s)	46, 165, 364, 598
SaqAI	TTAA	2 cut(s)	197, 572
Sau3AI	GATC	1 cut(s)	182
Sau96I	GGNCC	2 cut(s)	419, 658
SchI	GAGTC	1 cut(s)	620
SfuI	TTCGAA	1 cut(s)	633
SinI	GGWCC	2 cut(s)	419, 658
SphI	GCATGC	1 cut(s)	509
Sse9I	AATT	4 cut(s)	93, 142, 310, 527
SseBI	AGGCCT	1 cut(s)	150
SspMI	CTAG	1 cut(s)	54
StuI	AGGCCT	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	4 cut(s)	36, 164, 289, 493
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	3 cut(s)	75, 240, 633
TasI	AATT	4 cut(s)	93, 142, 310, 527
TatI	WGTACW	3 cut(s)	45, 164, 597
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	2 cut(s)	197, 572
Tru9I	TTAA	2 cut(s)	197, 572
TscAI	CASTG	5 cut(s)	104, 140, 361, 451, 498
TspDTI	ATGAA	3 cut(s)	283, 291, 296
TspRI	CASTG	5 cut(s)	104, 140, 361, 451, 498
VpaK11BI	GGWCC	2 cut(s)	419, 658
XapI	RAATTY	2 cut(s)	142, 527
XceI	RCATGY	2 cut(s)	485, 509
XmiI	GTMKAC	1 cut(s)	31
XspI	CTAG	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.