Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014922

Physical Location & Seq

Genomic Coordinates Forward (+)

55991368 .. 55995196

Gene Structure 3829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG362800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGCAGGTTGCACAAGTGCTTTTGACACTGCCATACTCATTTTCACAACTGGGTTTGTTGTCTGGGATTCTATTTCAGCTTTTTTATGGGTTGATGGGAAGCTGGACTGCTTACCTTATCAGTCTACTGTATGTTGAGTACAGAACTAGAAAGGAGAGAGAAAAGGTCGATTTCAGAAACCACGTAATTCAGTGGTTTGAAGTTCTTGATGGACTTCTGGGAAAGCACTGGAGAAATTTAGGCCTCTTTTTCAACTGTACTTTTCTTCTGTTCGGATCTGTCATTCAGTTAATCGCTTGTGCAAGTAACATCTACTACATAAACGACAACCTCGACAAGAGAACTTGGACGTATATCTTTGGAGCTTGCTGTGCTACAACTGTCTTCATCCCTTCATTTCATAATTACAGAATCTGGTCATTCTTGGGTCTTATTATGACTACTTATACTGCATGGTACCTCACCATTGCTTCCCTTATCCATGGACAGGTTGAAGGAGTGAAGCACTCAGGTCCAACCACGATGGTTCTCTACTTCACTGGAGCTACCAACATTCTCTACACTTTTGGTGGACATGCTGTAACAGTGGAGATTATGCATGCAATGTGGAAGCCACAGAAATTCAAGATGATATACTTGATGGCAACACTTTATGTGCTGACCTTAACTTTACCATCAGCTTCTGCTGTGTACTGGGCTTTTGGAGACGCCCTCTTGACTCATTCGAACGCTCTCGCTTTGCTTCCGAGGACCAGATTTAGAGACACTGCTGTTGTTCTCATGCTTATTCACCAGTTTATAACATTTGGATTTGCTTGCACTCCATTGTACTTTGTGTGGGAGAAATTCCTGAGGGTTCATGAGACCAAGAGCATGTTAAAGAGGGCCCTTGCCAGACTTCCAGTGGTGATCCCAATTTGGTTCCTTGCAATCATATTCCCGTTCTTTGGCCCCATCAACTCAACTGTTGGATCTCTTCTTGTCAGCTTTACTGTCTATATAATCCCTGCTTTAGCTCACATGGTCACTTTTGCTTCTCCACAAGCTCGAGAGAATGCTGTGGAGAGACCACCATCATTCTTGGGAGGGTGGGCAGGATCATACACCATGAACATCTTTGTGGTGGTGTGGGTGGCAATAGTGGGATTTGGATTCGGAGGGTGGGCAAGCATGCTCAACTTTATACACCAAGTTAATACATTTGGTCTATTCACCAAGTGCTACCAATGCCCTCCCCACAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009926 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010328 GO:0010817 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0044464 GO:0046942 GO:0046943 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

415

Amino Acids

47.22

Weight (kDa)

9.36

Isoelectric Point (pI)

27.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	3 - 380	1.2e-76	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77690
fragaria_vesca	FvH4_2g26410
malus_domestica	MD15G1355600.v1.1
prunus_persica	Prupe.1G503100_v2.0.a1
pyrus_communis	pycom08g14440 pycom15g31780
rosa_chinensis	RchiOBHm_Chr6g0295041
rosa_laevigata	RLG00000011824
rosa_multiflora	Rmu_sc0008767.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172780
rosa_rugosa	Rorug06G0249000
rosa_samantha	Rh6AG362000 Rh6BG369600 Rh6CG376200 Rh6DG362800
rosa_wichuraiana	Rw6G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	800
Acc65I	GGTACC	1 cut(s)	456
AccB1I	GGYRCC	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	124
AclWI	GGATC	4 cut(s)	283, 904, 979, 1105
AcsI	RAATTY	3 cut(s)	235, 620, 845
AcyI	GRCGYC	1 cut(s)	708
AdeI	CACNNNGTG	1 cut(s)	1218
AfaI	GTAC	5 cut(s)	140, 259, 458, 692, 830
AfiI	CCNNNNNNNGG	2 cut(s)	487, 947
AgsI	TTSAA	4 cut(s)	200, 253, 494, 625
AluBI	AGCT	9 cut(s)	79, 102, 365, 545, 680, 987, 1016, 1046, 1244
AluI	AGCT	9 cut(s)	79, 102, 365, 545, 680, 987, 1016, 1046, 1244
Alw26I	GTCTC	4 cut(s)	699, 756, 857, 1060
AlwI	GGATC	4 cut(s)	283, 904, 979, 1105
AlwNI	CAGNNNCTG	2 cut(s)	414, 683
Ama87I	CYCGRG	1 cut(s)	1047
AoxI	GGCC	3 cut(s)	241, 885, 949
ApaI	GGGCCC	1 cut(s)	889
ApoI	RAATTY	3 cut(s)	235, 620, 845
Asp718I	GGTACC	1 cut(s)	456
AspS9I	GGNCC	5 cut(s)	512, 750, 885, 886, 950
AsuHPI	GGTGA	4 cut(s)	454, 782, 919, 1204
AsuII	TTCGAA	1 cut(s)	725
AvaI	CYCGRG	1 cut(s)	1047
AvaII	GGWCC	2 cut(s)	512, 750
AxyI	CCTNAGG	1 cut(s)	851
BaeGI	GKGCMC	1 cut(s)	889
BanI	GGYRCC	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	889
BbsI	GAAGAC	1 cut(s)	376
BccI	CCATC	7 cut(s)	88, 203, 517, 634, 682, 962, 1081
BcoDI	GTCTC	4 cut(s)	699, 756, 857, 1060
BfaI	CTAG	1 cut(s)	147
Bme18I	GGWCC	2 cut(s)	512, 750
BmeT110I	CYCGRG	1 cut(s)	1047
BmgT120I	GGNCC	5 cut(s)	512, 750, 885, 886, 950
BmiI	GGNNCC	4 cut(s)	458, 887, 923, 952
BmrI	ACTGGG	2 cut(s)	59, 703
BmuI	ACTGGG	2 cut(s)	59, 703
BpiI	GAAGAC	1 cut(s)	376
BplI	GAGNNNNNCTC	2 cut(s)	696, 728
BpmI	CTGGAG	2 cut(s)	250, 561
Bpu14I	TTCGAA	1 cut(s)	725
BsaAI	YACGTR	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	708
BsaI	GGTCTC	2 cut(s)	857, 1060
BsaJI	CCNNGG	2 cut(s)	481, 746
Bsc4I	CCNNNNNNNGG	2 cut(s)	487, 947
Bse1I	ACTGG	6 cut(s)	54, 233, 544, 698, 793, 902
Bse21I	CCTNAGG	1 cut(s)	851
Bse3DI	GCAATG	2 cut(s)	465, 609
BseDI	CCNNGG	2 cut(s)	481, 746
BseGI	GGATG	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	487, 947
BseMI	GCAATG	2 cut(s)	465, 609
BseMII	CTCAG	2 cut(s)	522, 842
BseNI	ACTGG	6 cut(s)	54, 233, 544, 698, 793, 902
BseSI	GKGCMC	1 cut(s)	889
BshFI	GGCC	3 cut(s)	243, 887, 951
BshNI	GGYRCC	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	1047
BslI	CCNNNNNNNGG	2 cut(s)	487, 947
BsmAI	GTCTC	4 cut(s)	699, 756, 857, 1060
BsmBI	CGTCTC	1 cut(s)	699
BsmI	GAATGC	1 cut(s)	1060
BsnI	GGCC	3 cut(s)	243, 887, 951
Bso31I	GGTCTC	2 cut(s)	857, 1060
BsoBI	CYCGRG	1 cut(s)	1047
Bsp119I	TTCGAA	1 cut(s)	725
Bsp120I	GGGCCC	1 cut(s)	885
Bsp1286I	GDGCHC	1 cut(s)	889
Bsp143I	GATC	4 cut(s)	275, 909, 971, 1097
Bsp19I	CCATGG	1 cut(s)	481
BspANI	GGCC	3 cut(s)	243, 887, 951
BspCNI	CTCAG	2 cut(s)	521, 843
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	4 cut(s)	458, 887, 923, 952
BspPI	GGATC	4 cut(s)	283, 904, 979, 1105
BspT104I	TTCGAA	1 cut(s)	725
BspT107I	GGYRCC	1 cut(s)	456
BspTNI	GGTCTC	2 cut(s)	857, 1060
BsrDI	GCAATG	2 cut(s)	465, 609
BsrI	ACTGG	6 cut(s)	54, 233, 544, 698, 793, 902
BssECI	CCNNGG	2 cut(s)	481, 746
BssMI	GATC	4 cut(s)	275, 909, 971, 1097
BssNI	GRCGYC	1 cut(s)	708
BssT1I	CCWWGG	1 cut(s)	481
Bst4CI	ACNGT	6 cut(s)	129, 257, 382, 586, 967, 994
Bst6I	CTCTTC	1 cut(s)	981
BstACI	GRCGYC	1 cut(s)	708
BstBAI	YACGTR	1 cut(s)	184
BstBI	TTCGAA	1 cut(s)	725
BstC8I	GCNNGC	5 cut(s)	367, 600, 817, 1168, 1172
BstDEI	CTNAG	2 cut(s)	508, 851
BstDSI	CCRYGG	1 cut(s)	481
BstF5I	GGATG	1 cut(s)	387
BstKTI	GATC	4 cut(s)	278, 912, 974, 1100
BstMAI	GTCTC	4 cut(s)	699, 756, 857, 1060
BstMBI	GATC	4 cut(s)	275, 909, 971, 1097
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 1227
BstNSI	RCATGY	4 cut(s)	578, 602, 877, 1174
BstSLI	GKGCMC	1 cut(s)	889
BstV2I	GAAGAC	1 cut(s)	376
BstX2I	RGATCY	2 cut(s)	275, 971
BstYI	RGATCY	2 cut(s)	275, 971
Bsu36I	CCTNAGG	1 cut(s)	851
BsuRI	GGCC	3 cut(s)	243, 887, 951
BtgI	CCRYGG	1 cut(s)	481
BtsCI	GGATG	1 cut(s)	387
BtsI	GCAGTG	2 cut(s)	26, 765
BtsIMutI	CAGTG	7 cut(s)	26, 197, 226, 537, 591, 765, 909
Cac8I	GCNNGC	5 cut(s)	367, 600, 817, 1168, 1172
CaiI	CAGNNNCTG	2 cut(s)	414, 683
CciI	TCATGA	1 cut(s)	859
Cfr13I	GGNCC	5 cut(s)	512, 750, 885, 886, 950
CseI	GACGC	1 cut(s)	716
Csp6I	GTAC	5 cut(s)	139, 258, 457, 691, 829
CspCI	CAANNNNNGTGG	1 cut(s)	1226
CviQI	GTAC	5 cut(s)	139, 258, 457, 691, 829
DdeI	CTNAG	2 cut(s)	508, 851
DpnI	GATC	4 cut(s)	277, 911, 973, 1099
DpnII	GATC	4 cut(s)	275, 909, 971, 1097
DraIII	CACNNNGTG	1 cut(s)	1218
Eam1104I	CTCTTC	1 cut(s)	981
EarI	CTCTTC	1 cut(s)	981
Eco130I	CCWWGG	1 cut(s)	481
Eco147I	AGGCCT	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	889
Eco31I	GGTCTC	2 cut(s)	857, 1060
Eco47I	GGWCC	2 cut(s)	512, 750
Eco81I	CCTNAGG	1 cut(s)	851
Eco88I	CYCGRG	1 cut(s)	1047
EcoO109I	RGGNCCY	2 cut(s)	885, 886
EcoT14I	CCWWGG	1 cut(s)	481
EcoT22I	ATGCAT	1 cut(s)	600
EcoT38I	GRGCYC	1 cut(s)	889
ErhI	CCWWGG	1 cut(s)	481
Esp3I	CGTCTC	1 cut(s)	699
FblI	GTMKAC	1 cut(s)	124
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	889
FspBI	CTAG	1 cut(s)	147
GsuI	CTGGAG	2 cut(s)	250, 561
HaeIII	GGCC	3 cut(s)	243, 887, 951
HgaI	GACGC	1 cut(s)	716
Hin1I	GRCGYC	1 cut(s)	708
HindIII	AAGCTT	1 cut(s)	1242
HinfI	GANTC	4 cut(s)	67, 411, 718, 1152
HphI	GGTGA	4 cut(s)	454, 782, 919, 1204
Hpy166II	GTNNAC	3 cut(s)	125, 572, 691
Hpy188I	TCNGA	4 cut(s)	176, 275, 747, 1157
Hpy188III	TCNNGA	6 cut(s)	206, 625, 715, 850, 860, 1049
Hpy8I	GTNNAC	3 cut(s)	125, 572, 691
HpyAV	CCTTC	2 cut(s)	402, 488
HpyCH4III	ACNGT	6 cut(s)	129, 257, 382, 586, 967, 994
HpyCH4IV	ACGT	2 cut(s)	183, 350
HpyCH4V	TGCA	8 cut(s)	4, 11, 302, 452, 598, 602, 819, 929
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 1227
HpyF3I	CTNAG	2 cut(s)	508, 851
HpySE526I	ACGT	2 cut(s)	183, 350
Hsp92I	GRCGYC	1 cut(s)	708
KpnI	GGTACC	1 cut(s)	460
Kzo9I	GATC	4 cut(s)	275, 909, 971, 1097
LmnI	GCTCC	2 cut(s)	362, 542
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	2 cut(s)	183, 350
MaeIII	GTNAC	3 cut(s)	305, 580, 1024
MalI	GATC	4 cut(s)	277, 911, 973, 1099
MboI	GATC	4 cut(s)	275, 909, 971, 1097
MboII	GAAGA	3 cut(s)	257, 376, 968
MflI	RGATCY	2 cut(s)	275, 971
MhlI	GDGCHC	1 cut(s)	889
MluCI	AATT	6 cut(s)	186, 235, 403, 620, 845, 915
MlyI	GAGTC	1 cut(s)	712
MmeI	TCCRAC	2 cut(s)	539, 949
Mph1103I	ATGCAT	1 cut(s)	600
MseI	TTAA	4 cut(s)	290, 665, 878, 1194
MslI	CAYNNNNRTG	1 cut(s)	1118
Mva1269I	GAATGC	1 cut(s)	1060
MwoI	GCNNNNNNNGC	2 cut(s)	371, 1227
NcoI	CCATGG	1 cut(s)	481
NdeII	GATC	4 cut(s)	275, 909, 971, 1097
NlaIV	GGNNCC	4 cut(s)	458, 887, 923, 952
NmuCI	GTSAC	1 cut(s)	1024
NsiI	ATGCAT	1 cut(s)	600
NspI	RCATGY	4 cut(s)	578, 602, 877, 1174
NspV	TTCGAA	1 cut(s)	725
PaeI	GCATGC	2 cut(s)	602, 1174
PaeR7I	CTCGAG	1 cut(s)	1047
PagI	TCATGA	1 cut(s)	859
PceI	AGGCCT	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PctI	GAATGC	1 cut(s)	1060
PfeI	GAWTC	3 cut(s)	67, 411, 1152
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
Ppu21I	YACGTR	1 cut(s)	184
PsiI	TTATAA	1 cut(s)	800
PspN4I	GGNNCC	4 cut(s)	458, 887, 923, 952
PspOMI	GGGCCC	1 cut(s)	885
PspPI	GGNCC	5 cut(s)	512, 750, 885, 886, 950
PstNI	CAGNNNCTG	2 cut(s)	414, 683
PsuI	RGATCY	2 cut(s)	275, 971
RsaI	GTAC	5 cut(s)	140, 259, 458, 692, 830
RsaNI	GTAC	5 cut(s)	139, 258, 457, 691, 829
RseI	CAYNNNNRTG	1 cut(s)	1118
SaqAI	TTAA	4 cut(s)	290, 665, 878, 1194
Sau3AI	GATC	4 cut(s)	275, 909, 971, 1097
Sau96I	GGNCC	5 cut(s)	512, 750, 885, 886, 950
SchI	GAGTC	1 cut(s)	712
SduI	GDGCHC	1 cut(s)	889
Sfr274I	CTCGAG	1 cut(s)	1047
SfuI	TTCGAA	1 cut(s)	725
SinI	GGWCC	2 cut(s)	512, 750
SlaI	CTCGAG	1 cut(s)	1047
SmiMI	CAYNNNNRTG	1 cut(s)	1118
SmlI	CTYRAG	1 cut(s)	1047
SmoI	CTYRAG	1 cut(s)	1047
SphI	GCATGC	2 cut(s)	602, 1174
Sse9I	AATT	6 cut(s)	186, 235, 403, 620, 845, 915
SseBI	AGGCCT	1 cut(s)	243
SspMI	CTAG	1 cut(s)	147
StuI	AGGCCT	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	6 cut(s)	129, 257, 382, 586, 967, 994
TaiI	ACGT	2 cut(s)	186, 353
TaqI	TCGA	4 cut(s)	168, 333, 725, 1048
TasI	AATT	6 cut(s)	186, 235, 403, 620, 845, 915
TatI	WGTACW	4 cut(s)	138, 257, 690, 828
TfiI	GAWTC	3 cut(s)	67, 411, 1152
Tru1I	TTAA	4 cut(s)	290, 665, 878, 1194
Tru9I	TTAA	4 cut(s)	290, 665, 878, 1194
TscAI	CASTG	7 cut(s)	33, 197, 233, 544, 591, 772, 909
TseFI	GTSAC	1 cut(s)	1024
Tsp45I	GTSAC	1 cut(s)	1024
TspDTI	ATGAA	5 cut(s)	376, 384, 389, 848, 1124
TspRI	CASTG	7 cut(s)	33, 197, 233, 544, 591, 772, 909
VpaK11BI	GGWCC	2 cut(s)	512, 750
XapI	RAATTY	3 cut(s)	235, 620, 845
XceI	RCATGY	4 cut(s)	578, 602, 877, 1174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	901
XhoI	CTCGAG	1 cut(s)	1047
XmiI	GTMKAC	1 cut(s)	124
XspI	CTAG	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.