Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014922

Physical Location & Seq

Genomic Coordinates Reverse (-)

30510340 .. 30512287

Gene Structure 1948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g31780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCTTCCGAGAAGGTTGAGACTGTTATAGCCGGAAACTACGTCGAAATGGAAAGGGAAGAGAGTGATGCCCAGACAAGTGCTAAGAGCAAGCTATCAACATTTCTTTGGCATGGTGGCTCAGCATATGATGCATGGTTTAGCTGCGCTTCTAACCAGGTTGCTCAAGTGCTTCTCACACTGCCATACTCATTTTCCCAACTGGGTTTGTTATCTGGAATACTATTTCAGCTTTTTTATGGATTGATGGGAAGCTGGACTGCTTACCTCATCAGTTTACTATATGTCGAGTACAGAACTAGAAAGGAGAGAGAAAAGGTGGATTTTAGGAACCATGTAATTCAGTGGTTTGAAGTTCTTGATGGGCTCTTGGGAAAACATTGGAGGAATGTAGGCCTCTTTTTCAACTGCACTTTTCTTCTCTTTGGATCTGTAATTCAGTTAATTGCCTGTGCAAGTAACATCTACTACATAAACGACAATCTCGACAAGAGAACTTGGACTTACATCTTTGGAGCTTGCTGTGCTACAACTGTCTTCATCCCCTCATTCCATAATTACAGAATTTGGTCATTTTTGGGCCTTATTATGACTACTTACACTGCTTGGTATCTCACCATCGCTTCGCTTATCCATGGGCAGGTTGAGGGAGTGAAGCACTCTGGTCCAAGCACAATGGTTCTCTACTTCACTGGGGCTACCAACATTCTCTACACATTTGGTGGACATGCTGTTACAGTGGAAATTATGCATGCAATGTGGAAGCCACAGAAGTTCAAGTTAATATACTTGATGGCAACACTGTATGTGCTGACCTTAACCCTACCATCTGCGTCTGCTGTGTACTGGGCTTTCGGGGACAATCTCTTGACTCATTCCAATGCCCTAGCCATGCTTCCAAAGACTAGGTTTAGAGACACTGCAGTAGTCCTAATGCTCATTCATCAGTTTATCACATTTGGATTTGCTTGCACTCCCTTGTACTTTGTGTGGGAGAAATTCATTCAAATGCATGAGACCAAGAGTATGGTGAAGAGGGCACTGGCGAGGCTCCCAGTGGTGATCCCGATATGGTTCCTTGCCATCATATTCCCATTCTTTGGGCCCATCAACTCAACTGTTGCATTACACCATGATCTCTTCTTGTCAGCTTTACTGTCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009926 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010328 GO:0010817 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0044464 GO:0046942 GO:0046943 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

389

Amino Acids

44.24

Weight (kDa)

8.61

Isoelectric Point (pI)

29.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	38 - 374	6.9e-73	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77690
fragaria_vesca	FvH4_2g26410
malus_domestica	MD15G1355600.v1.1
prunus_persica	Prupe.1G503100_v2.0.a1
pyrus_communis	pycom08g14440 pycom15g31780
rosa_chinensis	RchiOBHm_Chr6g0295041
rosa_laevigata	RLG00000011824
rosa_multiflora	Rmu_sc0008767.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172780
rosa_rugosa	Rorug06G0249000
rosa_samantha	Rh6AG362000 Rh6BG369600 Rh6CG376200 Rh6DG362800
rosa_wichuraiana	Rw6G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	631
AccB7I	CCANNNNNTGG	1 cut(s)	1100
AccI	GTMKAC	1 cut(s)	1160
AclWI	GGATC	2 cut(s)	436, 1057
AcsI	RAATTY	2 cut(s)	564, 998
AfaI	GTAC	3 cut(s)	293, 845, 983
AfiI	CCNNNNNNNGG	2 cut(s)	640, 1100
AgsI	TTSAA	4 cut(s)	353, 406, 778, 1007
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	6 cut(s)	94, 144, 232, 255, 518, 1151
AluI	AGCT	6 cut(s)	94, 144, 232, 255, 518, 1151
Alw26I	GTCTC	3 cut(s)	14, 909, 1010
AlwI	GGATC	2 cut(s)	436, 1057
AoxI	GGCC	3 cut(s)	394, 580, 1103
ApaI	GGGCCC	1 cut(s)	1107
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	2 cut(s)	564, 998
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	4 cut(s)	580, 665, 1103, 1104
AsuHPI	GGTGA	3 cut(s)	607, 1042, 1072
AvaII	GGWCC	1 cut(s)	665
BaeGI	GKGCMC	2 cut(s)	1042, 1107
BanII	GRGCYC	2 cut(s)	369, 1107
BbsI	GAAGAC	1 cut(s)	529
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	7 cut(s)	241, 356, 626, 787, 835, 1091, 1115
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	3 cut(s)	14, 909, 1010
BfaI	CTAG	3 cut(s)	300, 887, 906
BfmI	CTRYAG	1 cut(s)	921
BfuAI	ACCTGC	1 cut(s)	631
BisI	GCNGC	1 cut(s)	145
BlpI	GCTNAGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	4 cut(s)	580, 665, 1103, 1104
BmiI	GGNNCC	4 cut(s)	332, 1052, 1076, 1105
BmrFI	CCNGG	1 cut(s)	158
BmrI	ACTGGG	4 cut(s)	212, 702, 856, 1049
BmsI	GCATC	2 cut(s)	58, 121
BmuI	ACTGGG	4 cut(s)	212, 702, 856, 1049
BpiI	GAAGAC	1 cut(s)	529
Bpu1102I	GCTNAGC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	1010
BsaJI	CCNNGG	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	2 cut(s)	640, 1100
Bse1I	ACTGG	5 cut(s)	207, 697, 851, 1047, 1055
Bse3DI	GCAATG	1 cut(s)	762
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	634
BseGI	GGATG	1 cut(s)	540
BseLI	CCNNNNNNNGG	2 cut(s)	640, 1100
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	5 cut(s)	207, 697, 851, 1047, 1055
BseSI	GKGCMC	2 cut(s)	1042, 1107
BseXI	GCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	394
BshFI	GGCC	3 cut(s)	396, 582, 1105
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	872
BslI	CCNNNNNNNGG	2 cut(s)	640, 1100
BsmAI	GTCTC	3 cut(s)	14, 909, 1010
BsmFI	GGGAC	1 cut(s)	872
BsnI	GGCC	3 cut(s)	396, 582, 1105
Bso31I	GGTCTC	1 cut(s)	1010
Bsp120I	GGGCCC	1 cut(s)	1103
Bsp1286I	GDGCHC	3 cut(s)	369, 1042, 1107
Bsp143I	GATC	3 cut(s)	428, 1062, 1135
Bsp1720I	GCTNAGC	1 cut(s)	121
Bsp19I	CCATGG	1 cut(s)	634
BspANI	GGCC	3 cut(s)	396, 582, 1105
BspCNI	CTCAG	1 cut(s)	134
BspLI	GGNNCC	4 cut(s)	332, 1052, 1076, 1105
BspMAI	CTGCAG	1 cut(s)	925
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	2 cut(s)	436, 1057
BspTNI	GGTCTC	1 cut(s)	1010
BsrDI	GCAATG	1 cut(s)	762
BsrI	ACTGG	5 cut(s)	207, 697, 851, 1047, 1055
BssECI	CCNNGG	1 cut(s)	634
BssMI	GATC	3 cut(s)	428, 1062, 1135
BssT1I	CCWWGG	1 cut(s)	634
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	6 cut(s)	25, 535, 739, 804, 1120, 1158
Bst6I	CTCTTC	3 cut(s)	54, 1028, 1145
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	4 cut(s)	92, 520, 753, 970
BstDEI	CTNAG	2 cut(s)	84, 121
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	3 cut(s)	431, 1065, 1138
BstMAI	GTCTC	3 cut(s)	14, 909, 1010
BstMBI	GATC	3 cut(s)	428, 1062, 1135
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 524
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	2 cut(s)	731, 755
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	921
BstSLI	GKGCMC	2 cut(s)	1042, 1107
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	428
BstXI	CCANNNNNNTGG	1 cut(s)	1027
BstYI	RGATCY	1 cut(s)	428
BsuRI	GGCC	3 cut(s)	396, 582, 1105
BtgI	CCRYGG	1 cut(s)	634
BtgZI	GCGATG	1 cut(s)	604
BtsCI	GGATG	1 cut(s)	540
BtsI	GCAGTG	3 cut(s)	179, 600, 918
BtsIMutI	CAGTG	9 cut(s)	179, 350, 600, 690, 744, 800, 918, 1040, 1062
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	4 cut(s)	92, 520, 753, 970
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	4 cut(s)	580, 665, 1103, 1104
CseI	GACGC	1 cut(s)	822
CsiI	ACCWGGT	1 cut(s)	156
Csp6I	GTAC	3 cut(s)	292, 844, 982
CviAII	CATG	9 cut(s)	113, 135, 335, 635, 728, 752, 892, 1013, 1133
CviQI	GTAC	3 cut(s)	292, 844, 982
DdeI	CTNAG	2 cut(s)	84, 121
DpnI	GATC	3 cut(s)	430, 1064, 1137
DpnII	GATC	3 cut(s)	428, 1062, 1135
Eam1104I	CTCTTC	3 cut(s)	54, 1028, 1145
EarI	CTCTTC	3 cut(s)	54, 1028, 1145
Eco130I	CCWWGG	1 cut(s)	634
Eco147I	AGGCCT	1 cut(s)	396
Eco24I	GRGCYC	2 cut(s)	369, 1107
Eco31I	GGTCTC	1 cut(s)	1010
Eco47I	GGWCC	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	634
EcoT22I	ATGCAT	3 cut(s)	136, 753, 1014
EcoT38I	GRGCYC	2 cut(s)	369, 1107
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	9 cut(s)	116, 138, 338, 638, 731, 755, 895, 1016, 1136
FaqI	GGGAC	1 cut(s)	872
FatI	CATG	9 cut(s)	112, 134, 334, 634, 727, 751, 891, 1012, 1132
FauNDI	CATATG	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	1160
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	2 cut(s)	369, 1107
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	3 cut(s)	300, 887, 906
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	1 cut(s)	145
HaeIII	GGCC	3 cut(s)	396, 582, 1105
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	822
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	9 cut(s)	116, 138, 338, 638, 731, 755, 895, 1016, 1136
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	1 cut(s)	871
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	3 cut(s)	607, 1042, 1072
Hpy166II	GTNNAC	4 cut(s)	278, 725, 844, 1161
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	5 cut(s)	216, 359, 485, 868, 1066
Hpy8I	GTNNAC	4 cut(s)	278, 725, 844, 1161
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	6 cut(s)	25, 535, 739, 804, 1120, 1158
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	9 cut(s)	134, 411, 455, 751, 755, 923, 972, 1012, 1124
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 524
HpyF3I	CTNAG	2 cut(s)	84, 121
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	9 cut(s)	116, 138, 338, 638, 731, 755, 895, 1016, 1136
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	428, 1062, 1135
LmnI	GCTCC	2 cut(s)	515, 1056
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	2 cut(s)	58, 121
MabI	ACCWGGT	1 cut(s)	156
MaeI	CTAG	3 cut(s)	300, 887, 906
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	458, 733
MalI	GATC	3 cut(s)	430, 1064, 1137
MboI	GATC	3 cut(s)	428, 1062, 1135
MboII	GAAGA	5 cut(s)	71, 410, 529, 1045, 1132
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	3 cut(s)	369, 1042, 1107
MluCI	AATT	7 cut(s)	339, 435, 444, 556, 564, 744, 998
MlyI	GAGTC	1 cut(s)	865
MnlI	CCTC	7 cut(s)	278, 378, 407, 556, 640, 1029, 1041
Mph1103I	ATGCAT	3 cut(s)	136, 753, 1014
MseI	TTAA	3 cut(s)	443, 782, 818
MslI	CAYNNNNRTG	2 cut(s)	879, 1007
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	131, 524
NcoI	CCATGG	1 cut(s)	634
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	3 cut(s)	428, 1062, 1135
NlaIII	CATG	9 cut(s)	116, 138, 338, 638, 731, 755, 895, 1016, 1136
NlaIV	GGNNCC	4 cut(s)	332, 1052, 1076, 1105
NsiI	ATGCAT	3 cut(s)	136, 753, 1014
NspI	RCATGY	2 cut(s)	731, 755
PaeI	GCATGC	1 cut(s)	755
PceI	AGGCCT	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PflMI	CCANNNNNTGG	1 cut(s)	1100
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	865
PpsI	GAGTC	1 cut(s)	865
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	4 cut(s)	332, 1052, 1076, 1105
PspOMI	GGGCCC	1 cut(s)	1103
PspPI	GGNCC	4 cut(s)	580, 665, 1103, 1104
PstI	CTGCAG	1 cut(s)	925
PsuI	RGATCY	1 cut(s)	428
RsaI	GTAC	3 cut(s)	293, 845, 983
RsaNI	GTAC	3 cut(s)	292, 844, 982
RseI	CAYNNNNRTG	2 cut(s)	879, 1007
SaqAI	TTAA	3 cut(s)	443, 782, 818
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	3 cut(s)	428, 1062, 1135
Sau96I	GGNCC	4 cut(s)	580, 665, 1103, 1104
SchI	GAGTC	1 cut(s)	865
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	3 cut(s)	369, 1042, 1107
SexAI	ACCWGGT	1 cut(s)	156
SfaNI	GCATC	2 cut(s)	58, 121
SfcI	CTRYAG	1 cut(s)	921
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	2 cut(s)	879, 1007
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
SphI	GCATGC	1 cut(s)	755
Sse9I	AATT	7 cut(s)	339, 435, 444, 556, 564, 744, 998
SseBI	AGGCCT	1 cut(s)	396
SspMI	CTAG	3 cut(s)	300, 887, 906
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	6 cut(s)	25, 535, 739, 804, 1120, 1158
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	3 cut(s)	45, 288, 486
TasI	AATT	7 cut(s)	339, 435, 444, 556, 564, 744, 998
TatI	WGTACW	3 cut(s)	291, 843, 981
Tru1I	TTAA	3 cut(s)	443, 782, 818
Tru9I	TTAA	3 cut(s)	443, 782, 818
TscAI	CASTG	9 cut(s)	186, 350, 607, 697, 744, 807, 925, 1047, 1062
TseI	GCWGC	1 cut(s)	144
TspDTI	ATGAA	3 cut(s)	529, 932, 991
TspRI	CASTG	9 cut(s)	186, 350, 607, 697, 744, 807, 925, 1047, 1062
Van91I	CCANNNNNTGG	1 cut(s)	1100
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	2 cut(s)	564, 998
XceI	RCATGY	2 cut(s)	731, 755
XmiI	GTMKAC	1 cut(s)	1160
XspI	CTAG	3 cut(s)	300, 887, 906
Zsp2I	ATGCAT	3 cut(s)	136, 753, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.