Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0014922

Physical Location & Seq

Genomic Coordinates Forward (+)

56266373 .. 56269711

Gene Structure 3339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG376200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCTTCCGAGAAGGTCGAGACCATTATCGCCGGAAGCTACTTAGAGATGGAAAGGGAAGATGGTAGTGATTCCAAGGCTTCTGCTAAGAGCAAGCTATCGACGTTTTTCTGGCACGGCGGCTCCGCCTATGATGCATGGTTTAGCTGTGCTTCTAACCAGGTTGCACAAGTGCTTTTGACACTGCCATACTCATTTTCACAACTGGGTTTGTTGTCTGGGATTCTATTTCAGCTTTTTTATGGGTTGATGGGAAGCTGGACTGCTTACCTTATCAGTCTACTGTATGTTGAGTACAGAACTAGAAAGGAGAGAGAAAAGGTCGATTTCAGAAACCACGTAATTCAGTGGTTTGAAGTTCTTGATGGACTTCTGGGAAAGCACTGGAGAAATTTAGGCCTCTTTTTCAACTGTACTTTTCTTCTGTTCGGATCTGTCATTCAGTTAATCGCCTGTGCAAGTAACATCTACTACATAAACGACAACCTCGACAAGAGAACTTGGACGTATATCTTTGGAGCTTGCTGTGCTACAACTGTCTTCATCCCTTCATTTCATAATTACAGAATCTGGTCATTCTTGGGTCTTATTATGACTACTTATACTGCATGGTACCTCACCATTGCTTCCCTTATCCATGGACAGGTTGAAGGAGTGAAGCACTCAGGTCCAACCACGATGGTTCTCTACTTCACTGGAGCTACCAACATTCTCTACACTTTTGGTGGACATGCTGTTACAGTGGAGATTATGCATGCAATGTGGAAGCCACAGAAATTCAAGATGATATACTTGATGGCAACACTTTATGTGCTGACCTTAACTTTACCATCAGCTTCTGCTGTGTACTGGGCTTTTGGAGACGCCCTCTTGACTCATTCGAACGCTCTCGCTTTGCTTCCGAGGACCAGATTTAGAGACACTGCTGTTGTTCTCATGCTTATTCACCAGGTAACATTAGCAAATGAAATTGATCATTTCAAATCGATTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009926 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010328 GO:0010817 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022622 GO:0022857 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0044464 GO:0046942 GO:0046943 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048829 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098656 GO:0099402 GO:1903825 GO:1905039 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

331

Amino Acids

37.59

Weight (kDa)

8.18

Isoelectric Point (pI)

24.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	39 - 319	9.6e-59	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77690
fragaria_vesca	FvH4_2g26410
malus_domestica	MD15G1355600.v1.1
prunus_persica	Prupe.1G503100_v2.0.a1
pyrus_communis	pycom08g14440 pycom15g31780
rosa_chinensis	RchiOBHm_Chr6g0295041
rosa_laevigata	RLG00000011824
rosa_multiflora	Rmu_sc0008767.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172780
rosa_rugosa	Rorug06G0249000
rosa_samantha	Rh6AG362000 Rh6BG369600 Rh6CG376200 Rh6DG362800
rosa_wichuraiana	Rw6G031590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	612
AccB1I	GGYRCC	1 cut(s)	612
AccI	GTMKAC	1 cut(s)	280
AciI	CCGC	2 cut(s)	120, 126
AclWI	GGATC	1 cut(s)	439
AcsI	RAATTY	2 cut(s)	391, 776
AcyI	GRCGYC	1 cut(s)	864
AfaI	GTAC	4 cut(s)	296, 415, 614, 848
AfiI	CCNNNNNNNGG	1 cut(s)	643
AgsI	TTSAA	5 cut(s)	356, 409, 650, 781, 982
AjnI	CCWGG	2 cut(s)	159, 948
AluBI	AGCT	8 cut(s)	39, 97, 147, 235, 258, 521, 701, 836
AluI	AGCT	8 cut(s)	39, 97, 147, 235, 258, 521, 701, 836
Alw26I	GTCTC	3 cut(s)	14, 855, 912
AlwI	GGATC	1 cut(s)	439
AlwNI	CAGNNNCTG	2 cut(s)	570, 839
AoxI	GGCC	1 cut(s)	397
ApoI	RAATTY	2 cut(s)	391, 776
Asp718I	GGTACC	1 cut(s)	612
AspS9I	GGNCC	2 cut(s)	668, 906
AsuHPI	GGTGA	2 cut(s)	610, 938
AsuII	TTCGAA	1 cut(s)	881
AvaII	GGWCC	2 cut(s)	668, 906
BanI	GGYRCC	1 cut(s)	612
BbsI	GAAGAC	1 cut(s)	532
BccI	CCATC	7 cut(s)	43, 56, 244, 359, 673, 790, 838
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	2 cut(s)	161, 950
BclI	TGATCA	1 cut(s)	973
BcoDI	GTCTC	3 cut(s)	14, 855, 912
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	161, 950
Bme18I	GGWCC	2 cut(s)	668, 906
BmgT120I	GGNCC	2 cut(s)	668, 906
BmiI	GGNNCC	2 cut(s)	124, 614
BmrFI	CCNGG	2 cut(s)	161, 950
BmrI	ACTGGG	2 cut(s)	215, 859
BmsI	GCATC	1 cut(s)	124
BmuI	ACTGGG	2 cut(s)	215, 859
BpiI	GAAGAC	1 cut(s)	532
BplI	GAGNNNNNCTC	2 cut(s)	852, 884
BpmI	CTGGAG	2 cut(s)	406, 717
Bpu14I	TTCGAA	1 cut(s)	881
Bsa29I	ATCGAT	1 cut(s)	986
BsaAI	YACGTR	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	864
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	75, 637, 902
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	643
Bse1I	ACTGG	4 cut(s)	210, 389, 700, 854
Bse3DI	GCAATG	2 cut(s)	621, 765
BseBI	CCWGG	2 cut(s)	161, 950
BseCI	ATCGAT	1 cut(s)	986
BseDI	CCNNGG	3 cut(s)	75, 637, 902
BseGI	GGATG	1 cut(s)	543
BseLI	CCNNNNNNNGG	1 cut(s)	643
BseMI	GCAATG	2 cut(s)	621, 765
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	4 cut(s)	210, 389, 700, 854
BshFI	GGCC	1 cut(s)	399
BshNI	GGYRCC	1 cut(s)	612
BshVI	ATCGAT	1 cut(s)	986
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	643
BsmAI	GTCTC	3 cut(s)	14, 855, 912
BsmBI	CGTCTC	1 cut(s)	855
BsnI	GGCC	1 cut(s)	399
Bso31I	GGTCTC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	881
Bsp143I	GATC	2 cut(s)	431, 973
Bsp19I	CCATGG	1 cut(s)	637
BspACI	CCGC	2 cut(s)	120, 126
BspANI	GGCC	1 cut(s)	399
BspCNI	CTCAG	1 cut(s)	677
BspDI	ATCGAT	1 cut(s)	986
BspLI	GGNNCC	2 cut(s)	124, 614
BspPI	GGATC	1 cut(s)	439
BspT104I	TTCGAA	1 cut(s)	881
BspT107I	GGYRCC	1 cut(s)	612
BspTNI	GGTCTC	1 cut(s)	14
BsrDI	GCAATG	2 cut(s)	621, 765
BsrI	ACTGG	4 cut(s)	210, 389, 700, 854
BssECI	CCNNGG	3 cut(s)	75, 637, 902
BssMI	GATC	2 cut(s)	431, 973
BssNI	GRCGYC	1 cut(s)	864
BssT1I	CCWWGG	2 cut(s)	75, 637
Bst2UI	CCWGG	2 cut(s)	161, 950
Bst4CI	ACNGT	4 cut(s)	285, 413, 538, 742
BstACI	GRCGYC	1 cut(s)	864
BstBAI	YACGTR	1 cut(s)	340
BstBI	TTCGAA	1 cut(s)	881
BstC8I	GCNNGC	3 cut(s)	95, 523, 756
BstDEI	CTNAG	3 cut(s)	43, 87, 664
BstDSI	CCRYGG	1 cut(s)	637
BstF5I	GGATG	1 cut(s)	543
BstKTI	GATC	2 cut(s)	434, 976
BstMAI	GTCTC	3 cut(s)	14, 855, 912
BstMBI	GATC	2 cut(s)	431, 973
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 527
BstNI	CCWGG	2 cut(s)	161, 950
BstNSI	RCATGY	2 cut(s)	734, 758
BstSCI	CCNGG	2 cut(s)	159, 948
BstV2I	GAAGAC	1 cut(s)	532
BstX2I	RGATCY	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	431
Bsu15I	ATCGAT	1 cut(s)	986
BsuRI	GGCC	1 cut(s)	399
BsuTUI	ATCGAT	1 cut(s)	986
BtgI	CCRYGG	1 cut(s)	637
BtsCI	GGATG	1 cut(s)	543
BtsI	GCAGTG	2 cut(s)	182, 921
BtsIMutI	CAGTG	6 cut(s)	182, 353, 382, 693, 747, 921
Cac8I	GCNNGC	3 cut(s)	95, 523, 756
CaiI	CAGNNNCTG	2 cut(s)	570, 839
Cfr13I	GGNCC	2 cut(s)	668, 906
ClaI	ATCGAT	1 cut(s)	986
CseI	GACGC	1 cut(s)	872
CsiI	ACCWGGT	2 cut(s)	159, 948
Csp6I	GTAC	4 cut(s)	295, 414, 613, 847
CviAII	CATG	6 cut(s)	138, 609, 638, 731, 755, 937
CviQI	GTAC	4 cut(s)	295, 414, 613, 847
DdeI	CTNAG	3 cut(s)	43, 87, 664
DpnI	GATC	2 cut(s)	433, 975
DpnII	GATC	2 cut(s)	431, 973
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	75, 637
Eco147I	AGGCCT	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	2 cut(s)	668, 906
EcoRII	CCWGG	2 cut(s)	159, 948
EcoT14I	CCWWGG	2 cut(s)	75, 637
EcoT22I	ATGCAT	2 cut(s)	139, 756
ErhI	CCWWGG	2 cut(s)	75, 637
Esp3I	CGTCTC	1 cut(s)	855
FaeI	CATG	6 cut(s)	141, 612, 641, 734, 758, 940
FatI	CATG	6 cut(s)	137, 608, 637, 730, 754, 936
FbaI	TGATCA	1 cut(s)	973
FblI	GTMKAC	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	1 cut(s)	530
Fsp4HI	GCNGC	1 cut(s)	121
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	1 cut(s)	121
GsuI	CTGGAG	2 cut(s)	406, 717
HaeIII	GGCC	1 cut(s)	399
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	872
Hin1I	GRCGYC	1 cut(s)	864
Hin1II	CATG	6 cut(s)	141, 612, 641, 734, 758, 940
HinfI	GANTC	4 cut(s)	71, 223, 567, 874
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	2 cut(s)	610, 938
Hpy166II	GTNNAC	3 cut(s)	281, 728, 847
Hpy188I	TCNGA	4 cut(s)	10, 332, 431, 903
Hpy188III	TCNNGA	4 cut(s)	19, 362, 781, 871
Hpy8I	GTNNAC	3 cut(s)	281, 728, 847
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	3 cut(s)	7, 558, 644
HpyCH4III	ACNGT	4 cut(s)	285, 413, 538, 742
HpyCH4IV	ACGT	3 cut(s)	104, 339, 506
HpyCH4V	TGCA	6 cut(s)	137, 167, 458, 608, 754, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 527
HpyF3I	CTNAG	3 cut(s)	43, 87, 664
HpySE526I	ACGT	3 cut(s)	104, 339, 506
Hsp92I	GRCGYC	1 cut(s)	864
Hsp92II	CATG	6 cut(s)	141, 612, 641, 734, 758, 940
KpnI	GGTACC	1 cut(s)	616
Ksp22I	TGATCA	1 cut(s)	973
Kzo9I	GATC	2 cut(s)	431, 973
LmnI	GCTCC	3 cut(s)	128, 518, 698
LweI	GCATC	1 cut(s)	124
MabI	ACCWGGT	2 cut(s)	159, 948
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	3 cut(s)	104, 339, 506
MaeIII	GTNAC	3 cut(s)	461, 736, 952
MalI	GATC	2 cut(s)	433, 975
MboI	GATC	2 cut(s)	431, 973
MboII	GAAGA	3 cut(s)	71, 413, 532
MflI	RGATCY	1 cut(s)	431
MluCI	AATT	5 cut(s)	342, 391, 559, 776, 969
MlyI	GAGTC	1 cut(s)	868
MmeI	TCCRAC	1 cut(s)	695
MnlI	CCTC	5 cut(s)	410, 497, 626, 878, 897
Mph1103I	ATGCAT	2 cut(s)	139, 756
MseI	TTAA	2 cut(s)	446, 821
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	2 cut(s)	161, 950
MvaI	CCWGG	2 cut(s)	161, 950
MwoI	GCNNNNNNNGC	2 cut(s)	134, 527
NcoI	CCATGG	1 cut(s)	637
NdeII	GATC	2 cut(s)	431, 973
NlaIII	CATG	6 cut(s)	141, 612, 641, 734, 758, 940
NlaIV	GGNNCC	2 cut(s)	124, 614
NsiI	ATGCAT	2 cut(s)	139, 756
NspI	RCATGY	2 cut(s)	734, 758
NspV	TTCGAA	1 cut(s)	881
PaeI	GCATGC	1 cut(s)	758
PceI	AGGCCT	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PfeI	GAWTC	3 cut(s)	71, 223, 567
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	868
PpsI	GAGTC	1 cut(s)	868
Ppu21I	YACGTR	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	159, 948
PspGI	CCWGG	2 cut(s)	159, 948
PspN4I	GGNNCC	2 cut(s)	124, 614
PspPI	GGNCC	2 cut(s)	668, 906
PstNI	CAGNNNCTG	2 cut(s)	570, 839
PsuI	RGATCY	1 cut(s)	431
RsaI	GTAC	4 cut(s)	296, 415, 614, 848
RsaNI	GTAC	4 cut(s)	295, 414, 613, 847
SaqAI	TTAA	2 cut(s)	446, 821
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	2 cut(s)	431, 973
Sau96I	GGNCC	2 cut(s)	668, 906
SchI	GAGTC	1 cut(s)	868
ScrFI	CCNGG	2 cut(s)	161, 950
SexAI	ACCWGGT	2 cut(s)	159, 948
SfaNI	GCATC	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	881
SinI	GGWCC	2 cut(s)	668, 906
SphI	GCATGC	1 cut(s)	758
Sse9I	AATT	5 cut(s)	342, 391, 559, 776, 969
SseBI	AGGCCT	1 cut(s)	399
SsiI	CCGC	2 cut(s)	120, 126
SspMI	CTAG	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	159, 948
StyI	CCWWGG	2 cut(s)	75, 637
TaaI	ACNGT	4 cut(s)	285, 413, 538, 742
TaiI	ACGT	3 cut(s)	107, 342, 509
TaqI	TCGA	6 cut(s)	18, 101, 324, 489, 881, 986
TasI	AATT	5 cut(s)	342, 391, 559, 776, 969
TatI	WGTACW	3 cut(s)	294, 413, 846
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	3 cut(s)	71, 223, 567
Tru1I	TTAA	2 cut(s)	446, 821
Tru9I	TTAA	2 cut(s)	446, 821
TscAI	CASTG	6 cut(s)	189, 353, 389, 700, 747, 928
TspDTI	ATGAA	4 cut(s)	532, 540, 545, 981
TspRI	CASTG	6 cut(s)	189, 353, 389, 700, 747, 928
VpaK11BI	GGWCC	2 cut(s)	668, 906
XapI	RAATTY	2 cut(s)	391, 776
XceI	RCATGY	2 cut(s)	734, 758
XmiI	GTMKAC	1 cut(s)	280
XspI	CTAG	1 cut(s)	303
Zsp2I	ATGCAT	2 cut(s)	139, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.