AT1G79260

Domain of unknown function (DUF1794)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013155
Physical Location & Seq
Forward (+)
29813146 .. 29814351
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79260.1

Sequence Viewer

Length: 501 bp
ATGAATCAGCTGCAGCAACTCCAAAACCCAGGGGAATCGCCGCCGGTGCACCCTTTTGTAGCGCCGTTGTCGTATCTATTAGGAACATGGAGAGGACAAGGAGAAGGTGAATATCCTACTATACCGTCTTTCCGCTACGGCGAAGAGATCCGTTTCTCACATTCCGGCAAGCCGGTGATAGCGTATACGCAAAAGACATGGAAATTGGAATCAGGAGCTCCGATGCACGCCGAGAGTGGTTACTTTCGTCCAAGACCAGATGGTTCTATTGAAGTCGTCATTGCTCAGAGCACAGGTCTCGTCGAAGTCCAGAAAGGAACATACAATGTAGATGAACAATCAATCAAACTCAAAAGTGATCTTGTGGGAAACGCTTCAAAGGTGAAGGAGATAAGTAGAGAATTTGAATTGGTTGATGGAAAACTATCGTATGTGGTTCGTATGAGTACAACCACTAACCCTCTTCAACCACATCTCAAAGCAATACTCGATAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1794

Protein Analysis

166

Amino Acids

18.49

Weight (kDa)

6.92

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THAP4_heme-bd PF08768 20 - 165 1.1e-51 THAP4-like, heme-binding beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79260 AT1G79260
fragaria_vesca FvH4_3g13790
malus_domestica MD05G1240900.v1.1
prunus_persica Prupe.4G124700_v2.0.a1 Prupe.4G124700_v2.0.a1
pyrus_communis pycom05g21710
rosa_chinensis RchiOBHm_Chr5g0022981
rosa_laevigata RLG00000032686
rosa_multiflora Rmu_sc0002675.1_g000005 Rmu_sc0030024.1_g000001
rosa_roxburghii Rroxscaffold_1G00056360
rosa_rugosa Rorug05G0076200
rosa_samantha Rh5AG162400 Rh5BG161600 Rh5CG176300 Rh5DG163000
rosa_wichuraiana Rw5G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 185
AciI CCGC 2 cut(s) 41, 133
AclWI GGATC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 401
AfaI GTAC 1 cut(s) 448
AgsI TTSAA 4 cut(s) 272, 378, 407, 467
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 3 cut(s) 10, 218, 496
AluI AGCT 3 cut(s) 10, 218, 496
Alw21I GWGCWC 3 cut(s) 51, 220, 293
Alw26I GTCTC 1 cut(s) 302
Alw44I GTGCAC 1 cut(s) 47
AlwI GGATC 1 cut(s) 142
ApaLI GTGCAC 1 cut(s) 47
ApeKI GCWGC 2 cut(s) 10, 13
ApoI RAATTY 1 cut(s) 401
Asp700I GAANNNNTTC 1 cut(s) 373
AspLEI GCGC 1 cut(s) 64
AsuHPI GGTGA 3 cut(s) 119, 187, 394
BaeGI GKGCMC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 220
Bbv12I GWGCWC 3 cut(s) 51, 220, 293
BbvI GCAGC 1 cut(s) 25
BccI CCATC 2 cut(s) 254, 410
BceAI ACGGC 2 cut(s) 49, 154
BcgI CGANNNNNNTGC 2 cut(s) 280, 314
BciT130I CCWGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 11
BfoI RGCGCY 1 cut(s) 65
BisI GCNGC 3 cut(s) 11, 14, 41
BlsI GCNGC 3 cut(s) 12, 15, 42
Bme1390I CCNGG 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 2 cut(s) 28, 29
Bse118I RCCGGY 2 cut(s) 43, 172
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 28, 29
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 1 cut(s) 25
BsiHKAI GWGCWC 3 cut(s) 51, 220, 293
BsiSI CCGG 3 cut(s) 44, 165, 173
BsmAI GTCTC 1 cut(s) 302
Bso31I GGTCTC 1 cut(s) 302
Bsp1286I GDGCHC 3 cut(s) 51, 220, 293
Bsp143I GATC 2 cut(s) 147, 358
BspACI CCGC 2 cut(s) 41, 133
BspCNI CTCAG 1 cut(s) 298
BspMAI CTGCAG 1 cut(s) 15
BspPI GGATC 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 2 cut(s) 43, 172
BssAI RCCGGY 2 cut(s) 43, 172
BssECI CCNNGG 2 cut(s) 28, 29
BssMI GATC 2 cut(s) 147, 358
BssNAI GTATAC 1 cut(s) 186
Bst1107I GTATAC 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 126
Bst6I CTCTTC 2 cut(s) 138, 468
BstC8I GCNNGC 2 cut(s) 170, 228
BstDEI CTNAG 1 cut(s) 285
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 2 cut(s) 150, 361
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 2 cut(s) 147, 358
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstSFI CTRYAG 1 cut(s) 11
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BstZ17I GTATAC 1 cut(s) 186
Cac8I GCNNGC 2 cut(s) 170, 228
CfoI GCGC 1 cut(s) 64
Cfr10I RCCGGY 2 cut(s) 43, 172
Csp6I GTAC 1 cut(s) 447
CviAII CATG 2 cut(s) 87, 198
CviJI RGCY 4 cut(s) 10, 172, 218, 496
CviKI_1 RGCY 4 cut(s) 10, 172, 218, 496
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 1 cut(s) 285
DpnI GATC 2 cut(s) 149, 360
DpnII GATC 2 cut(s) 147, 358
Eam1104I CTCTTC 2 cut(s) 138, 468
EarI CTCTTC 2 cut(s) 138, 468
Ecl136II GAGCTC 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 220
FaeI CATG 2 cut(s) 90, 201
FaiI YATR 7 cut(s) 88, 122, 186, 199, 322, 432, 443
FatI CATG 2 cut(s) 86, 197
FblI GTMKAC 1 cut(s) 185
Fnu4HI GCNGC 3 cut(s) 11, 14, 41
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 3 cut(s) 11, 14, 41
GlaI GCGC 1 cut(s) 63
GluI GCNGC 3 cut(s) 11, 14, 41
HaeII RGCGCY 1 cut(s) 65
HapII CCGG 3 cut(s) 44, 165, 173
HhaI GCGC 1 cut(s) 64
Hin1II CATG 2 cut(s) 90, 201
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 3 cut(s) 4, 35, 209
HpaII CCGG 3 cut(s) 44, 165, 173
HphI GGTGA 3 cut(s) 119, 187, 394
Hpy166II GTNNAC 2 cut(s) 49, 186
Hpy188I TCNGA 2 cut(s) 222, 288
Hpy188III TCNNGA 2 cut(s) 213, 310
Hpy8I GTNNAC 2 cut(s) 49, 186
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 98, 379
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 13, 49, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 2 cut(s) 90, 201
HspAI GCGC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 147, 358
LmnI GCTCC 2 cut(s) 215, 223
LpnPI CCDG 9 cut(s) 15, 42, 57, 178, 186, 198, 270, 279, 323
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 239
MalI GATC 2 cut(s) 149, 360
MboI GATC 2 cut(s) 147, 358
MboII GAAGA 2 cut(s) 155, 455
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 3 cut(s) 51, 220, 293
MluCI AATT 3 cut(s) 203, 401, 407
MnlI CCTC 2 cut(s) 86, 471
MroXI GAANNNNTTC 1 cut(s) 373
MspA1I CMGCKG 1 cut(s) 10
MspI CCGG 3 cut(s) 44, 165, 173
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 2 cut(s) 147, 358
NlaIII CATG 2 cut(s) 90, 201
NmeAIII GCCGAG 1 cut(s) 256
PasI CCCWGGG 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 373
PfeI GAWTC 3 cut(s) 4, 35, 209
PkrI GCNGC 3 cut(s) 12, 15, 42
Psp124BI GAGCTC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PstI CTGCAG 1 cut(s) 15
PsuI RGATCY 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
SacI GAGCTC 1 cut(s) 220
SatI GCNGC 3 cut(s) 11, 14, 41
Sau3AI GATC 2 cut(s) 147, 358
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 3 cut(s) 51, 220, 293
SetI ASST 6 cut(s) 12, 109, 220, 298, 384, 498
SfaNI GCATC 1 cut(s) 213
SfcI CTRYAG 1 cut(s) 11
SgrAI CRCCGGYG 1 cut(s) 43
Sse9I AATT 3 cut(s) 203, 401, 407
SsiI CCGC 2 cut(s) 41, 133
SstI GAGCTC 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 303, 489
TasI AATT 3 cut(s) 203, 401, 407
TatI WGTACW 1 cut(s) 446
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 3 cut(s) 4, 35, 209
TseI GCWGC 2 cut(s) 10, 13
TspDTI ATGAA 2 cut(s) 17, 348
TspGWI ACGGA 1 cut(s) 140
VneI GTGCAC 1 cut(s) 47
XapI RAATTY 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.