Rh5AG162400

UPF0678 fatty acid-binding protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013155
Physical Location & Seq
Forward (+)
17418295 .. 17420546
2252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG162400.1

Sequence Viewer

Length: 489 bp
ATGGCGGAGGACGGCGCTAAACCATCGCCGGTGGTCCACCCGGCGATTGCGCCACTGTCTTACCTTCTGGGTTCATGGAAAGGCCAAGGCGAAGGCGGCTTCCCCACCATCAACTCCTTCTCATACGGCGAACAACTCCATTTCTCTCACTCCGGCAAGCCGGTGATAGCTTACACTCAGAAGACTTGGAAATTGAACTCCGGCGAGCCTATGCACGCTGAGAGTGGCTTTTGGCTGCCCAAGCCTGATGGGACCATCGAGGTTGTCATCGCTCAAAGCACTGGTCTTGTTGAAGTTCAGAAAGGGACGTACAATGCAGAAGAACAAGTGATAAACCTTCAAACTGAGCTAGTGGGAAATGCAACAAAGGTAAAAGAGATAACCAGAGTTTTTAGGATGGTTGACGGAGAACTGTCTTATGAAGTTCAGATGGCTACAAATCTCAACAGTCTTCAACCACATCTAAAAGCCTCGCTCAAGAGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1794

Protein Analysis

162

Amino Acids

17.72

Weight (kDa)

6.2

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THAP4_heme-bd PF08768 16 - 161 4.4e-50 THAP4-like, heme-binding beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79260 AT1G79260
fragaria_vesca FvH4_3g13790
malus_domestica MD05G1240900.v1.1
prunus_persica Prupe.4G124700_v2.0.a1 Prupe.4G124700_v2.0.a1
pyrus_communis pycom05g21710
rosa_chinensis RchiOBHm_Chr5g0022981
rosa_laevigata RLG00000032686
rosa_multiflora Rmu_sc0002675.1_g000005 Rmu_sc0030024.1_g000001
rosa_roxburghii Rroxscaffold_1G00056360
rosa_rugosa Rorug05G0076200
rosa_samantha Rh5AG162400 Rh5BG161600 Rh5CG176300 Rh5DG163000
rosa_wichuraiana Rw5G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 96
AfaI GTAC 1 cut(s) 311
AgsI TTSAA 4 cut(s) 196, 293, 341, 455
AluBI AGCT 2 cut(s) 170, 349
AluI AGCT 2 cut(s) 170, 349
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 235
ArsI GACNNNNNNTTYG 2 cut(s) 268, 300
AspLEI GCGC 2 cut(s) 17, 52
AspS9I GGNCC 2 cut(s) 34, 252
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 175
AvaII GGWCC 2 cut(s) 34, 252
BbsI GAAGAC 2 cut(s) 188, 443
BbvI GCAGC 1 cut(s) 222
BccI CCATC 6 cut(s) 31, 116, 242, 263, 391, 424
BceAI ACGGC 2 cut(s) 28, 142
BcnI CCSGG 1 cut(s) 41
BfaI CTAG 1 cut(s) 350
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 2 cut(s) 97, 236
BlsI GCNGC 2 cut(s) 98, 237
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 2 cut(s) 34, 252
BmgT120I GGNCC 2 cut(s) 34, 252
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 41
BpiI GAAGAC 2 cut(s) 188, 443
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 85
Bse118I RCCGGY 2 cut(s) 28, 160
Bse1I ACTGG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 402
BseMII CTCAG 3 cut(s) 191, 210, 336
BseNI ACTGG 1 cut(s) 286
BseXI GCAGC 1 cut(s) 222
BshFI GGCC 1 cut(s) 84
BsiSI CCGG 5 cut(s) 29, 41, 153, 161, 201
BslFI GGGAC 2 cut(s) 265, 319
BsmFI GGGAC 2 cut(s) 265, 319
BsnI GGCC 1 cut(s) 84
BspACI CCGC 2 cut(s) 5, 96
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 3 cut(s) 190, 211, 337
BspLI GGNNCC 1 cut(s) 253
BsrFI RCCGGY 2 cut(s) 28, 160
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 2 cut(s) 28, 160
BssECI CCNNGG 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 3 cut(s) 57, 414, 449
BstC8I GCNNGC 3 cut(s) 158, 206, 216
BstDEI CTNAG 3 cut(s) 177, 219, 345
BstF5I GGATG 1 cut(s) 402
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 52
BstMWI GCNNNNNNNGC 2 cut(s) 96, 241
BstSCI CCNGG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 222
BstV2I GAAGAC 2 cut(s) 188, 443
BsuRI GGCC 1 cut(s) 84
BtgZI GCGATG 2 cut(s) 9, 253
BtsCI GGATG 1 cut(s) 402
BtsIMutI CAGTG 2 cut(s) 53, 279
Cac8I GCNNGC 3 cut(s) 158, 206, 216
CfoI GCGC 2 cut(s) 17, 52
Cfr10I RCCGGY 2 cut(s) 28, 160
Cfr13I GGNCC 2 cut(s) 34, 252
Csp6I GTAC 1 cut(s) 310
CviAII CATG 1 cut(s) 75
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 177, 219, 345
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 34, 252
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 1 cut(s) 78
FaiI YATR 4 cut(s) 76, 124, 212, 420
FaqI GGGAC 2 cut(s) 265, 319
FatI CATG 1 cut(s) 74
Fnu4HI GCNGC 2 cut(s) 97, 236
FokI GGATG 1 cut(s) 409
Fsp4HI GCNGC 2 cut(s) 97, 236
FspBI CTAG 1 cut(s) 350
GlaI GCGC 2 cut(s) 16, 51
GluI GCNGC 2 cut(s) 97, 236
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 84
HapII CCGG 5 cut(s) 29, 41, 153, 161, 201
HhaI GCGC 2 cut(s) 17, 52
Hin1II CATG 1 cut(s) 78
Hin6I GCGC 2 cut(s) 15, 50
HinP1I GCGC 2 cut(s) 15, 50
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 1 cut(s) 483
HpaII CCGG 5 cut(s) 29, 41, 153, 161, 201
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 37, 403
Hpy188I TCNGA 4 cut(s) 180, 300, 429, 488
Hpy188III TCNNGA 1 cut(s) 478
Hpy8I GTNNAC 2 cut(s) 37, 403
HpyAV CCTTC 4 cut(s) 74, 86, 127, 347
HpyCH4III ACNGT 3 cut(s) 57, 414, 449
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 3 cut(s) 214, 317, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 241
HpyF3I CTNAG 3 cut(s) 177, 219, 345
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 1 cut(s) 78
HspAI GCGC 2 cut(s) 15, 50
LpnPI CCDG 9 cut(s) 42, 53, 54, 166, 174, 214, 258, 267, 397
Lsp1109I GCAGC 1 cut(s) 222
MaeI CTAG 1 cut(s) 350
MaeII ACGT 1 cut(s) 308
MboII GAAGA 3 cut(s) 193, 332, 443
MluCI AATT 1 cut(s) 191
MnlI CCTC 2 cut(s) 253, 481
MspI CCGG 5 cut(s) 29, 41, 153, 161, 201
MspR9I CCNGG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 96, 241
NciI CCSGG 1 cut(s) 41
NlaIII CATG 1 cut(s) 78
NlaIV GGNNCC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 483
PkrI GCNGC 2 cut(s) 98, 237
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 2 cut(s) 34, 252
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SatI GCNGC 2 cut(s) 97, 236
Sau96I GGNCC 2 cut(s) 34, 252
ScrFI CCNGG 1 cut(s) 41
SetI ASST 7 cut(s) 66, 172, 264, 311, 339, 351, 372
SgrAI CRCCGGYG 1 cut(s) 28
SinI GGWCC 2 cut(s) 34, 252
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 1 cut(s) 191
SsiI CCGC 2 cut(s) 5, 96
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 3 cut(s) 57, 414, 449
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 258
TasI AATT 1 cut(s) 191
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 483
TscAI CASTG 2 cut(s) 60, 286
TseI GCWGC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 63, 435
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 2 cut(s) 60, 286
VpaK11BI GGWCC 2 cut(s) 34, 252
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.