Rroxscaffold_1G00056360

UPF0678 fatty acid-binding protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013155
Physical Location & Seq
Reverse (-)
78134281 .. 78136419
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00056360.1

Sequence Viewer

Length: 489 bp
ATGGCGGAGGACGGCGCTAAACCATCGCCGGCGGTCCACCCGGCGATCGCGCCACTCTCTTACCTTCTTGGTTCATGGAAAGGCCAAGGCGAAGGCGGCTTCCCCACCATCAACTCCTTCTCTTACGGCGAACAACTCCATTTCTCTCACTCCGGCAAGCCGGTGATAGCTTACACTCAGAAGACTTGGAAATTGAACTCCGGCGAGCCTATGCACGCTGAGAGTGGCTTTTGGCGGCCCAAGCCTGATGGGACCATCGAGGTTGTCATTGCTCAAAGCACTGGTCTTGTTGAAGTTCAGAAAGGGACGTACAATGCAGAAGAAAAAGTGATAAACCTTCAAACTGAGCTAGTGGGAAATGCAACAAAGGTAAAAGAGATAACTAGAGTTTTTAAGTTGGTTGACGGAGAATTGTCTTATGAGGTTCAGATGGCTACAAATCTCAACAGTCTTCAACCACATCTAAAAGCCTCGCTCAAGAGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1794

Protein Analysis

162

Amino Acids

17.68

Weight (kDa)

6.97

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THAP4_heme-bd PF08768 16 - 161 2.3e-51 THAP4-like, heme-binding beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79260 AT1G79260
fragaria_vesca FvH4_3g13790
malus_domestica MD05G1240900.v1.1
prunus_persica Prupe.4G124700_v2.0.a1 Prupe.4G124700_v2.0.a1
pyrus_communis pycom05g21710
rosa_chinensis RchiOBHm_Chr5g0022981
rosa_laevigata RLG00000032686
rosa_multiflora Rmu_sc0002675.1_g000005 Rmu_sc0030024.1_g000001
rosa_roxburghii Rroxscaffold_1G00056360
rosa_rugosa Rorug05G0076200
rosa_samantha Rh5AG162400 Rh5BG161600 Rh5CG176300 Rh5DG163000
rosa_wichuraiana Rw5G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 50
AciI CCGC 4 cut(s) 5, 32, 96, 235
AfaI GTAC 1 cut(s) 311
AgsI TTSAA 4 cut(s) 196, 293, 341, 455
AluBI AGCT 2 cut(s) 170, 349
AluI AGCT 2 cut(s) 170, 349
AoxI GGCC 2 cut(s) 82, 236
ArsI GACNNNNNNTTYG 2 cut(s) 268, 300
AsiSI GCGATCGC 1 cut(s) 48
AspLEI GCGC 2 cut(s) 17, 52
AspS9I GGNCC 3 cut(s) 34, 237, 252
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 175
AvaII GGWCC 2 cut(s) 34, 252
BbsI GAAGAC 2 cut(s) 188, 443
BccI CCATC 5 cut(s) 31, 116, 242, 263, 424
BceAI ACGGC 2 cut(s) 28, 142
BcnI CCSGG 1 cut(s) 41
BfaI CTAG 2 cut(s) 350, 384
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 2 cut(s) 97, 236
BlsI GCNGC 2 cut(s) 98, 237
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 2 cut(s) 34, 252
BmgT120I GGNCC 3 cut(s) 34, 237, 252
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 41
BpiI GAAGAC 2 cut(s) 188, 443
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 85
Bse118I RCCGGY 2 cut(s) 28, 160
Bse1I ACTGG 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 85
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 3 cut(s) 191, 210, 336
BseNI ACTGG 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 84, 238
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 5 cut(s) 29, 41, 153, 161, 201
BslFI GGGAC 2 cut(s) 265, 319
BsmFI GGGAC 2 cut(s) 265, 319
BsnI GGCC 2 cut(s) 84, 238
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 4 cut(s) 5, 32, 96, 235
BspANI GGCC 2 cut(s) 84, 238
BspCNI CTCAG 3 cut(s) 190, 211, 337
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 267
BsrFI RCCGGY 2 cut(s) 28, 160
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 2 cut(s) 28, 160
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 449
BstC8I GCNNGC 4 cut(s) 30, 158, 206, 216
BstDEI CTNAG 3 cut(s) 177, 219, 345
BstFNI CGCG 1 cut(s) 50
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 52
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 96, 241
BstSCI CCNGG 1 cut(s) 39
BstUI CGCG 1 cut(s) 50
BstV2I GAAGAC 2 cut(s) 188, 443
BsuRI GGCC 2 cut(s) 84, 238
BtgZI GCGATG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 4 cut(s) 30, 158, 206, 216
CfoI GCGC 2 cut(s) 17, 52
Cfr10I RCCGGY 2 cut(s) 28, 160
Cfr13I GGNCC 3 cut(s) 34, 237, 252
Csp6I GTAC 1 cut(s) 310
CviAII CATG 1 cut(s) 75
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 177, 219, 345
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 34, 252
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 1 cut(s) 78
FaiI YATR 3 cut(s) 76, 212, 420
FaqI GGGAC 2 cut(s) 265, 319
FatI CATG 1 cut(s) 74
Fnu4HI GCNGC 2 cut(s) 97, 236
Fsp4HI GCNGC 2 cut(s) 97, 236
FspBI CTAG 2 cut(s) 350, 384
GlaI GCGC 2 cut(s) 16, 51
GluI GCNGC 2 cut(s) 97, 236
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 2 cut(s) 84, 238
HapII CCGG 5 cut(s) 29, 41, 153, 161, 201
HhaI GCGC 2 cut(s) 17, 52
Hin1II CATG 1 cut(s) 78
Hin6I GCGC 2 cut(s) 15, 50
HinP1I GCGC 2 cut(s) 15, 50
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 1 cut(s) 483
HpaII CCGG 5 cut(s) 29, 41, 153, 161, 201
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 37, 403
Hpy188I TCNGA 4 cut(s) 180, 300, 429, 488
Hpy188III TCNNGA 1 cut(s) 478
Hpy8I GTNNAC 2 cut(s) 37, 403
HpyAV CCTTC 4 cut(s) 74, 86, 127, 347
HpyCH4III ACNGT 1 cut(s) 449
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 3 cut(s) 214, 317, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 241
HpyF3I CTNAG 3 cut(s) 177, 219, 345
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 1 cut(s) 78
HspAI GCGC 2 cut(s) 15, 50
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 7 cut(s) 42, 54, 166, 174, 214, 258, 267
MaeI CTAG 2 cut(s) 350, 384
MaeII ACGT 1 cut(s) 308
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 3 cut(s) 193, 332, 443
MluCI AATT 2 cut(s) 191, 410
MnlI CCTC 3 cut(s) 253, 415, 481
MreI CGCCGGCG 1 cut(s) 28
MroNI GCCGGC 1 cut(s) 28
MseI TTAA 1 cut(s) 393
MspI CCGG 5 cut(s) 29, 41, 153, 161, 201
MspR9I CCNGG 1 cut(s) 41
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 96, 241
NaeI GCCGGC 1 cut(s) 30
NciI CCSGG 1 cut(s) 41
NdeII GATC 1 cut(s) 45
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 1 cut(s) 78
NlaIV GGNNCC 1 cut(s) 253
PdiI GCCGGC 1 cut(s) 30
PkrI GCNGC 2 cut(s) 98, 237
Ple19I CGATCG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 3 cut(s) 34, 237, 252
PvuI CGATCG 1 cut(s) 48
RgaI GCGATCGC 1 cut(s) 48
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 2 cut(s) 97, 236
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 3 cut(s) 34, 237, 252
ScrFI CCNGG 1 cut(s) 41
SetI ASST 8 cut(s) 66, 172, 264, 311, 339, 351, 372, 426
SfaAI GCGATCGC 1 cut(s) 48
SgfI GCGATCGC 1 cut(s) 48
SgrAI CRCCGGYG 1 cut(s) 28
SinI GGWCC 2 cut(s) 34, 252
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 2 cut(s) 191, 410
SsiI CCGC 4 cut(s) 5, 32, 96, 235
SspMI CTAG 2 cut(s) 350, 384
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 449
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 258
TasI AATT 2 cut(s) 191, 410
TauI GCSGC 2 cut(s) 99, 238
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 1 cut(s) 286
VpaK11BI GGWCC 2 cut(s) 34, 252
XspI CTAG 2 cut(s) 350, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.