RLG00000032686

UPF0678 fatty acid-binding protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013155
Physical Location & Seq
Forward (+)
17817185 .. 17819304
2120 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032686

Sequence Viewer

Length: 489 bp
ATGGCGGAGGACGGCGCTAAACCATCGCCGGCGGTCCACCCGGCGATTGCGCCACTGTCTTACCTTCTTGGTTCGTGGAAGGGCCAAGGCGAAGGCGGCTTCCCCACCATCAACTCCTTCTCTTACGGCGAACAACTCCATTTCTCTCACTCCGGCAAGCCGGTGATAGCTTACACTCAGAAGACTTGGAAATTGAACTCCGGCGAGCCTATGCACGCCGAGAGTGGCTTTTGGCGTCCCAAGCCTGATGGGACCATCGAGGTTGTCATCGCTCAAAGCACTGGTCTTGTTGAAGTTCAGAAAGGGACGTACAATGCAGAAGAAAAAGTGATAAACCTTCAAGCCGAGCTAGTGGGAAATGCAACAAAGGTAAAAGAGATAACCAGAGTTTTTAGGTTGGTTGACGGAGAACTGTCTTATGAAGTTCAGATGGCTACAAATCTCAACAGTCTTCAACCACATCTAAAAGCCTCGCTCAAGAGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1794

Protein Analysis

163

Amino Acids

17.68

Weight (kDa)

6.98

Isoelectric Point (pI)

30.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THAP4_heme-bd PF08768 16 - 161 1.2e-50 THAP4-like, heme-binding beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79260 AT1G79260
fragaria_vesca FvH4_3g13790
malus_domestica MD05G1240900.v1.1
prunus_persica Prupe.4G124700_v2.0.a1 Prupe.4G124700_v2.0.a1
pyrus_communis pycom05g21710
rosa_chinensis RchiOBHm_Chr5g0022981
rosa_laevigata RLG00000032686
rosa_multiflora Rmu_sc0002675.1_g000005 Rmu_sc0030024.1_g000001
rosa_roxburghii Rroxscaffold_1G00056360
rosa_rugosa Rorug05G0076200
rosa_samantha Rh5AG162400 Rh5BG161600 Rh5CG176300 Rh5DG163000
rosa_wichuraiana Rw5G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 32, 96
AcyI GRCGYC 1 cut(s) 235
AfaI GTAC 1 cut(s) 311
AgsI TTSAA 4 cut(s) 196, 293, 341, 455
AluBI AGCT 2 cut(s) 170, 349
AluI AGCT 2 cut(s) 170, 349
AoxI GGCC 1 cut(s) 82
ArsI GACNNNNNNTTYG 2 cut(s) 268, 300
AspLEI GCGC 2 cut(s) 17, 52
AspS9I GGNCC 3 cut(s) 34, 82, 252
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 175
AvaII GGWCC 2 cut(s) 34, 252
BbsI GAAGAC 2 cut(s) 188, 443
BccI CCATC 5 cut(s) 31, 116, 242, 263, 424
BceAI ACGGC 2 cut(s) 28, 142
BcnI CCSGG 1 cut(s) 41
BfaI CTAG 1 cut(s) 350
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 2 cut(s) 34, 252
BmgT120I GGNCC 3 cut(s) 34, 82, 252
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 41
BpiI GAAGAC 2 cut(s) 188, 443
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 85
Bse118I RCCGGY 2 cut(s) 28, 160
Bse1I ACTGG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 286
BshFI GGCC 1 cut(s) 84
BsiSI CCGG 5 cut(s) 29, 41, 153, 161, 201
BslFI GGGAC 3 cut(s) 222, 265, 319
BsmFI GGGAC 3 cut(s) 222, 265, 319
BsnI GGCC 1 cut(s) 84
BspACI CCGC 3 cut(s) 5, 32, 96
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 253
BsrFI RCCGGY 2 cut(s) 28, 160
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 2 cut(s) 28, 160
BssECI CCNNGG 1 cut(s) 85
BssNI GRCGYC 1 cut(s) 235
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 3 cut(s) 57, 414, 449
BstACI GRCGYC 1 cut(s) 235
BstC8I GCNNGC 4 cut(s) 30, 158, 206, 216
BstDEI CTNAG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 52
BstMWI GCNNNNNNNGC 2 cut(s) 96, 241
BstSCI CCNGG 1 cut(s) 39
BstV2I GAAGAC 2 cut(s) 188, 443
BsuRI GGCC 1 cut(s) 84
BtgZI GCGATG 2 cut(s) 9, 253
BtsIMutI CAGTG 2 cut(s) 53, 279
Cac8I GCNNGC 4 cut(s) 30, 158, 206, 216
CfoI GCGC 2 cut(s) 17, 52
Cfr10I RCCGGY 2 cut(s) 28, 160
Cfr13I GGNCC 3 cut(s) 34, 82, 252
CseI GACGC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 310
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 1 cut(s) 177
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 34, 252
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaiI YATR 2 cut(s) 212, 420
FaqI GGGAC 3 cut(s) 222, 265, 319
Fnu4HI GCNGC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 1 cut(s) 350
GlaI GCGC 2 cut(s) 16, 51
GluI GCNGC 1 cut(s) 97
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 84
HapII CCGG 5 cut(s) 29, 41, 153, 161, 201
HgaI GACGC 1 cut(s) 224
HhaI GCGC 2 cut(s) 17, 52
Hin1I GRCGYC 1 cut(s) 235
Hin6I GCGC 2 cut(s) 15, 50
HinP1I GCGC 2 cut(s) 15, 50
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 1 cut(s) 483
HpaII CCGG 5 cut(s) 29, 41, 153, 161, 201
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 37, 403
Hpy188I TCNGA 4 cut(s) 180, 300, 429, 488
Hpy188III TCNNGA 1 cut(s) 478
Hpy8I GTNNAC 2 cut(s) 37, 403
HpyAV CCTTC 5 cut(s) 73, 74, 86, 127, 347
HpyCH4III ACNGT 3 cut(s) 57, 414, 449
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 3 cut(s) 214, 317, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 241
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 308
Hsp92I GRCGYC 1 cut(s) 235
HspAI GCGC 2 cut(s) 15, 50
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
LpnPI CCDG 8 cut(s) 42, 54, 166, 174, 214, 258, 267, 397
MaeI CTAG 1 cut(s) 350
MaeII ACGT 1 cut(s) 308
MboII GAAGA 3 cut(s) 193, 332, 443
MluCI AATT 1 cut(s) 191
MnlI CCTC 2 cut(s) 253, 481
MreI CGCCGGCG 1 cut(s) 28
MroNI GCCGGC 1 cut(s) 28
MspI CCGG 5 cut(s) 29, 41, 153, 161, 201
MspR9I CCNGG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 96, 241
NaeI GCCGGC 1 cut(s) 30
NciI CCSGG 1 cut(s) 41
NgoMIV GCCGGC 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 253
NmeAIII GCCGAG 2 cut(s) 244, 370
PdiI GCCGGC 1 cut(s) 30
PkrI GCNGC 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 3 cut(s) 34, 82, 252
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SatI GCNGC 1 cut(s) 97
Sau96I GGNCC 3 cut(s) 34, 82, 252
ScrFI CCNGG 1 cut(s) 41
SetI ASST 8 cut(s) 66, 172, 264, 311, 339, 351, 372, 398
SgrAI CRCCGGYG 1 cut(s) 28
SinI GGWCC 2 cut(s) 34, 252
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 1 cut(s) 191
SsiI CCGC 3 cut(s) 5, 32, 96
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 3 cut(s) 57, 414, 449
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 258
TasI AATT 1 cut(s) 191
TauI GCSGC 1 cut(s) 99
TscAI CASTG 2 cut(s) 60, 286
TspDTI ATGAA 1 cut(s) 435
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 2 cut(s) 60, 286
VpaK11BI GGWCC 2 cut(s) 34, 252
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.