FvH4_3g13790

UPF0678 fatty acid-binding protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013155
Physical Location & Seq
Forward (+)
8268679 .. 8270970
2292 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13790.t1

Sequence Viewer

Length: 489 bp
ATGGCGGAGGACGGCGCTAAAGCATCGCCGGCGGTCCACCCGGCGATCGCGCCACTGTCATACCTTCTGGGTTCATGGAAAGGCCAAGGCGAGGGCGGCTTCCCCACCATCAACTCCTTCTCTTACGGCGAACAACTCCATTTCTCTCATTCCGGCAAGCCGGTGATAGCTTACACACAGAAGACTTGGAAATTGAACTCCGGGGAGCCTATGCACGCCGAGAGTGGATATTGGCGGCCCAAACCTGATGGGACTATTGAAGTCGTCATTGCTCAAAGCACTGGTCTTGTTGAAGTTCAGAAAGGGACGTACAATGCAGAAGAGAAAGTGATAAACCTTCGAACTGAGCTAGTGGGAAATGCAACAAAGGTGAAAGAGATAACCAGAGTTTTTAAGTTGGTTGACAAAGAACTGTCTTATGAAGTTCAGATGGCTACCAATCTCAACAGTCTCCAACCACATCTAAAAGCCTCGCTCAAGAGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1794

Protein Analysis

163

Amino Acids

17.77

Weight (kDa)

8.73

Isoelectric Point (pI)

27.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THAP4_heme-bd PF08768 16 - 161 7.5e-51 THAP4-like, heme-binding beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79260 AT1G79260
fragaria_vesca FvH4_3g13790
malus_domestica MD05G1240900.v1.1
prunus_persica Prupe.4G124700_v2.0.a1 Prupe.4G124700_v2.0.a1
pyrus_communis pycom05g21710
rosa_chinensis RchiOBHm_Chr5g0022981
rosa_laevigata RLG00000032686
rosa_multiflora Rmu_sc0002675.1_g000005 Rmu_sc0030024.1_g000001
rosa_roxburghii Rroxscaffold_1G00056360
rosa_rugosa Rorug05G0076200
rosa_samantha Rh5AG162400 Rh5BG161600 Rh5CG176300 Rh5DG163000
rosa_wichuraiana Rw5G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 50
AciI CCGC 4 cut(s) 5, 32, 96, 235
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 3 cut(s) 196, 260, 293
AluBI AGCT 2 cut(s) 170, 349
AluI AGCT 2 cut(s) 170, 349
Alw26I GTCTC 1 cut(s) 455
AoxI GGCC 2 cut(s) 82, 236
ArsI GACNNNNNNTTYG 2 cut(s) 268, 300
AsiSI GCGATCGC 1 cut(s) 48
AspLEI GCGC 2 cut(s) 17, 52
AspS9I GGNCC 2 cut(s) 34, 237
AsuC2I CCSGG 2 cut(s) 41, 202
AsuHPI GGTGA 2 cut(s) 175, 382
AsuII TTCGAA 1 cut(s) 340
AvaII GGWCC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 188
BccI CCATC 3 cut(s) 116, 242, 424
BceAI ACGGC 2 cut(s) 28, 142
BcnI CCSGG 2 cut(s) 41, 202
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 1 cut(s) 350
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 2 cut(s) 97, 236
BlsI GCNGC 2 cut(s) 98, 237
Bme1390I CCNGG 2 cut(s) 41, 202
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 34, 237
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 2 cut(s) 41, 202
BmsI GCATC 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 188
Bpu14I TTCGAA 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 2 cut(s) 41, 202
BsaJI CCNNGG 2 cut(s) 85, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 2 cut(s) 28, 160
Bse1I ACTGG 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 85, 201
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 84, 238
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 5 cut(s) 29, 41, 153, 161, 201
BslFI GGGAC 2 cut(s) 265, 319
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 2 cut(s) 265, 319
BsnI GGCC 2 cut(s) 84, 238
Bsp119I TTCGAA 1 cut(s) 340
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 4 cut(s) 5, 32, 96, 235
BspANI GGCC 2 cut(s) 84, 238
BspCNI CTCAG 1 cut(s) 337
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 207
BspT104I TTCGAA 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 267
BsrFI RCCGGY 2 cut(s) 28, 160
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 2 cut(s) 28, 160
BssECI CCNNGG 2 cut(s) 85, 201
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 3 cut(s) 57, 414, 449
Bst6I CTCTTC 1 cut(s) 315
BstBI TTCGAA 1 cut(s) 340
BstC8I GCNNGC 3 cut(s) 30, 158, 216
BstDEI CTNAG 1 cut(s) 345
BstFNI CGCG 1 cut(s) 50
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 52
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 1 cut(s) 45
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 29, 96
BstSCI CCNGG 2 cut(s) 39, 200
BstUI CGCG 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 188
BsuRI GGCC 2 cut(s) 84, 238
BtgZI GCGATG 1 cut(s) 9
BtsIMutI CAGTG 2 cut(s) 53, 279
Cac8I GCNNGC 3 cut(s) 30, 158, 216
CfoI GCGC 2 cut(s) 17, 52
Cfr10I RCCGGY 2 cut(s) 28, 160
Cfr13I GGNCC 2 cut(s) 34, 237
Csp6I GTAC 1 cut(s) 310
CviAII CATG 1 cut(s) 75
CviJI RGCY 9 cut(s) 84, 99, 160, 170, 208, 238, 349, 434, 470
CviKI_1 RGCY 9 cut(s) 84, 99, 160, 170, 208, 238, 349, 434, 470
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 1 cut(s) 345
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 1 cut(s) 78
FaiI YATR 4 cut(s) 61, 76, 212, 420
FaqI GGGAC 2 cut(s) 265, 319
FatI CATG 1 cut(s) 74
Fnu4HI GCNGC 2 cut(s) 97, 236
Fsp4HI GCNGC 2 cut(s) 97, 236
FspBI CTAG 1 cut(s) 350
GlaI GCGC 2 cut(s) 16, 51
GluI GCNGC 2 cut(s) 97, 236
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 2 cut(s) 84, 238
HapII CCGG 5 cut(s) 29, 41, 153, 161, 201
HhaI GCGC 2 cut(s) 17, 52
Hin1II CATG 1 cut(s) 78
Hin6I GCGC 2 cut(s) 15, 50
HinP1I GCGC 2 cut(s) 15, 50
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 1 cut(s) 483
HpaII CCGG 5 cut(s) 29, 41, 153, 161, 201
HphI GGTGA 2 cut(s) 175, 382
Hpy166II GTNNAC 2 cut(s) 37, 403
Hpy188I TCNGA 3 cut(s) 300, 429, 488
Hpy188III TCNNGA 1 cut(s) 478
Hpy8I GTNNAC 2 cut(s) 37, 403
HpyAV CCTTC 3 cut(s) 74, 127, 347
HpyCH4III ACNGT 3 cut(s) 57, 414, 449
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 3 cut(s) 214, 317, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 96
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 1 cut(s) 78
HspAI GCGC 2 cut(s) 15, 50
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 9 cut(s) 42, 53, 54, 166, 174, 214, 258, 267, 397
LweI GCATC 1 cut(s) 32
MaeI CTAG 1 cut(s) 350
MaeII ACGT 1 cut(s) 308
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 2 cut(s) 193, 332
MluCI AATT 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 478
MnlI CCTC 2 cut(s) 85, 481
MreI CGCCGGCG 1 cut(s) 28
MroNI GCCGGC 1 cut(s) 28
MseI TTAA 1 cut(s) 393
MspI CCGG 5 cut(s) 29, 41, 153, 161, 201
MspR9I CCNGG 2 cut(s) 41, 202
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 29, 96
NaeI GCCGGC 1 cut(s) 30
NciI CCSGG 2 cut(s) 41, 202
NdeII GATC 1 cut(s) 45
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 1 cut(s) 78
NlaIV GGNNCC 1 cut(s) 207
NmeAIII GCCGAG 1 cut(s) 244
NspV TTCGAA 1 cut(s) 340
PdiI GCCGGC 1 cut(s) 30
PkrI GCNGC 2 cut(s) 98, 237
Ple19I CGATCG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 2 cut(s) 34, 237
PvuI CGATCG 1 cut(s) 48
RgaI GCGATCGC 1 cut(s) 48
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 2 cut(s) 97, 236
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 2 cut(s) 34, 237
ScrFI CCNGG 2 cut(s) 41, 202
SetI ASST 7 cut(s) 66, 172, 247, 311, 339, 351, 372
SfaAI GCGATCGC 1 cut(s) 48
SfaNI GCATC 1 cut(s) 32
SfuI TTCGAA 1 cut(s) 340
SgfI GCGATCGC 1 cut(s) 48
SgrAI CRCCGGYG 1 cut(s) 28
SinI GGWCC 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 1 cut(s) 191
SsiI CCGC 4 cut(s) 5, 32, 96, 235
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 2 cut(s) 39, 200
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 3 cut(s) 57, 414, 449
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 340
TasI AATT 1 cut(s) 191
TauI GCSGC 2 cut(s) 99, 238
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 2 cut(s) 60, 286
TspDTI ATGAA 2 cut(s) 63, 435
TspRI CASTG 2 cut(s) 60, 286
VpaK11BI GGWCC 1 cut(s) 34
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.