Rmu_sc0030024.1_g000001

UPF0678 fatty acid-binding protein-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030024.1
Physical Location & Seq
Forward (+)
2225 .. 2637
413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030024.1_g000001.1.cds

Sequence Viewer

Length: 324 bp
atggcggaggacggcgctaaaccatcgccggcggtccacccggcgattgcgccactgtcttaccttctgggttcatggaaaggccaaggcgaaggcggcttccccaccatcaactccttctcatacggcgaacaactccatttctctcactccggcaagccggtgatagcttacactcagaagacttggaaattgaactccggcgagcctatgcacgctgagagtggcttttggcggcccaagcctgatgggaccatcgaggttgtcatcgctcaaagcactggtcttgttgaagttcaggtaggaacagatttaatcaaataa
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

11.46

Weight (kDa)

6.03

Isoelectric Point (pI)

31.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013155)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 32, 96, 235
AgsI TTSAA 2 cut(s) 196, 293
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
AoxI GGCC 2 cut(s) 82, 236
ArsI GACNNNNNNTTYG 2 cut(s) 268, 300
AspLEI GCGC 2 cut(s) 17, 52
AspS9I GGNCC 3 cut(s) 34, 237, 252
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 175
AvaII GGWCC 2 cut(s) 34, 252
BbsI GAAGAC 1 cut(s) 188
BccI CCATC 4 cut(s) 31, 116, 242, 263
BceAI ACGGC 2 cut(s) 28, 142
BcnI CCSGG 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 2 cut(s) 97, 236
BlsI GCNGC 2 cut(s) 98, 237
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 2 cut(s) 34, 252
BmgT120I GGNCC 3 cut(s) 34, 237, 252
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 85
Bse118I RCCGGY 2 cut(s) 28, 160
Bse1I ACTGG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 85
BseMII CTCAG 2 cut(s) 191, 210
BseNI ACTGG 1 cut(s) 286
BshFI GGCC 2 cut(s) 84, 238
BsiSI CCGG 5 cut(s) 29, 41, 153, 161, 201
BslFI GGGAC 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 2 cut(s) 84, 238
BspACI CCGC 4 cut(s) 5, 32, 96, 235
BspANI GGCC 2 cut(s) 84, 238
BspCNI CTCAG 2 cut(s) 190, 211
BspLI GGNNCC 1 cut(s) 253
BsrFI RCCGGY 2 cut(s) 28, 160
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 2 cut(s) 28, 160
BssECI CCNNGG 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 57
BstC8I GCNNGC 4 cut(s) 30, 158, 206, 216
BstDEI CTNAG 2 cut(s) 177, 219
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 52
BstMWI GCNNNNNNNGC 2 cut(s) 96, 241
BstSCI CCNGG 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 188
BsuRI GGCC 2 cut(s) 84, 238
BtgZI GCGATG 2 cut(s) 9, 253
BtsIMutI CAGTG 2 cut(s) 53, 279
Cac8I GCNNGC 4 cut(s) 30, 158, 206, 216
CfoI GCGC 2 cut(s) 17, 52
Cfr10I RCCGGY 2 cut(s) 28, 160
Cfr13I GGNCC 3 cut(s) 34, 237, 252
CviAII CATG 1 cut(s) 75
CviJI RGCY 8 cut(s) 84, 99, 160, 170, 208, 228, 238, 244
CviKI_1 RGCY 8 cut(s) 84, 99, 160, 170, 208, 228, 238, 244
DdeI CTNAG 2 cut(s) 177, 219
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 34, 252
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 1 cut(s) 78
FaiI YATR 3 cut(s) 76, 124, 212
FaqI GGGAC 1 cut(s) 265
FatI CATG 1 cut(s) 74
Fnu4HI GCNGC 2 cut(s) 97, 236
Fsp4HI GCNGC 2 cut(s) 97, 236
GlaI GCGC 2 cut(s) 16, 51
GluI GCNGC 2 cut(s) 97, 236
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 2 cut(s) 84, 238
HapII CCGG 5 cut(s) 29, 41, 153, 161, 201
HhaI GCGC 2 cut(s) 17, 52
Hin1II CATG 1 cut(s) 78
Hin6I GCGC 2 cut(s) 15, 50
HinP1I GCGC 2 cut(s) 15, 50
HpaII CCGG 5 cut(s) 29, 41, 153, 161, 201
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 180
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 3 cut(s) 74, 86, 127
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 241
HpyF3I CTNAG 2 cut(s) 177, 219
Hsp92II CATG 1 cut(s) 78
HspAI GCGC 2 cut(s) 15, 50
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
LpnPI CCDG 9 cut(s) 42, 53, 54, 166, 174, 214, 258, 267, 284
MboII GAAGA 1 cut(s) 193
MluCI AATT 1 cut(s) 191
MnlI CCTC 1 cut(s) 253
MreI CGCCGGCG 1 cut(s) 28
MroNI GCCGGC 1 cut(s) 28
MseI TTAA 1 cut(s) 314
MspI CCGG 5 cut(s) 29, 41, 153, 161, 201
MspR9I CCNGG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 96, 241
NaeI GCCGGC 1 cut(s) 30
NciI CCSGG 1 cut(s) 41
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 1 cut(s) 78
NlaIV GGNNCC 1 cut(s) 253
PdiI GCCGGC 1 cut(s) 30
PkrI GCNGC 2 cut(s) 98, 237
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 3 cut(s) 34, 237, 252
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 2 cut(s) 97, 236
Sau96I GGNCC 3 cut(s) 34, 237, 252
ScrFI CCNGG 1 cut(s) 41
SetI ASST 4 cut(s) 66, 172, 264, 303
SgrAI CRCCGGYG 1 cut(s) 28
SinI GGWCC 2 cut(s) 34, 252
Sse9I AATT 1 cut(s) 191
SsiI CCGC 4 cut(s) 5, 32, 96, 235
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 258
TasI AATT 1 cut(s) 191
TauI GCSGC 2 cut(s) 99, 238
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TscAI CASTG 2 cut(s) 60, 286
TspDTI ATGAA 1 cut(s) 63
TspRI CASTG 2 cut(s) 60, 286
VpaK11BI GGWCC 2 cut(s) 34, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.