MD05G1240900.v1.1

UPF0678 fatty acid-binding protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013155
Physical Location & Seq
Reverse (-)
37160215 .. 37162958
2744 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1240900.v1.1.491

Sequence Viewer

Length: 495 bp
ATGGAGGGTGTCACTGCTACAGCATCACCGGACATACCCATGCACCCAGCAATAGCACCAATCTCGTATCTGCTGGGTACATGGAAAGGACAAGGAGAAGGTGGGTTTCCCACCATCAACTCCTTCTCTTACGTCGAGCACCTCAATTTCTCTCATTCCGGCAAGCCCTTCATAGCTTACACTCAGAAGACATGGAAATTGAATTCTGGGGAGCCAATGCACGCTGAGAGTGGGTTTTGGAGGCCCAAACCAGATGGTTCCATTGAAGTTGTCATTTCTCAAAGCACCGGCCTTGTCGAAGTTCAGAAAGGGACGTATGATGCAGAAGAGAAAGTAATAAAGCTTCAGAGCGAGCTTGTGGGCAATGCTTCTAAGGTGAGAGAGATAACCCGAGTTTTTAAGTTGGTAGATGAAGAATTGTCTTATGAGGTTCAGATGGCCACAAATCTCACCAGTCTTCAACCACATCTGAAAGCCTCACTCAAAAGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1794

Protein Analysis

165

Amino Acids

18.11

Weight (kDa)

6.2

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THAP4_heme-bd PF08768 18 - 163 2.7e-50 THAP4-like, heme-binding beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79260 AT1G79260
fragaria_vesca FvH4_3g13790
malus_domestica MD05G1240900.v1.1
prunus_persica Prupe.4G124700_v2.0.a1 Prupe.4G124700_v2.0.a1
pyrus_communis pycom05g21710
rosa_chinensis RchiOBHm_Chr5g0022981
rosa_laevigata RLG00000032686
rosa_multiflora Rmu_sc0002675.1_g000005 Rmu_sc0030024.1_g000001
rosa_roxburghii Rroxscaffold_1G00056360
rosa_rugosa Rorug05G0076200
rosa_samantha Rh5AG162400 Rh5BG161600 Rh5CG176300 Rh5DG163000
rosa_wichuraiana Rw5G014630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 438
AcsI RAATTY 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 1 cut(s) 79
AgsI TTSAA 3 cut(s) 202, 266, 461
AluBI AGCT 3 cut(s) 176, 343, 355
AluI AGCT 3 cut(s) 176, 343, 355
Alw21I GWGCWC 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 390
AoxI GGCC 3 cut(s) 242, 289, 438
ApoI RAATTY 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 243
AsuHPI GGTGA 3 cut(s) 18, 388, 442
AvaI CYCGRG 1 cut(s) 390
BalI TGGCCA 1 cut(s) 440
BarI GAAGNNNNNNTAC 2 cut(s) 327, 359
BbsI GAAGAC 2 cut(s) 194, 449
Bbv12I GWGCWC 1 cut(s) 141
BccI CCATC 3 cut(s) 122, 248, 430
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BfmI CTRYAG 1 cut(s) 18
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 2 cut(s) 213, 259
BmsI GCATC 2 cut(s) 32, 310
BpiI GAAGAC 2 cut(s) 194, 449
BsaWI WCCGGW 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 453
Bse3DI GCAATG 1 cut(s) 370
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 2 cut(s) 197, 216
BseNI ACTGG 1 cut(s) 453
BseYI CCCAGC 2 cut(s) 46, 73
BshFI GGCC 3 cut(s) 244, 291, 440
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 3 cut(s) 29, 159, 288
BslFI GGGAC 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 325
BsnI GGCC 3 cut(s) 244, 291, 440
BsoBI CYCGRG 1 cut(s) 390
Bsp1286I GDGCHC 1 cut(s) 141
BspANI GGCC 3 cut(s) 244, 291, 440
BspCNI CTCAG 2 cut(s) 196, 217
BspLI GGNNCC 2 cut(s) 213, 259
BsrDI GCAATG 1 cut(s) 370
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 1 cut(s) 453
BssAI RCCGGY 1 cut(s) 287
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 3 cut(s) 164, 222, 353
BstDEI CTNAG 3 cut(s) 183, 225, 372
BstSFI CTRYAG 1 cut(s) 18
BstV2I GAAGAC 2 cut(s) 194, 449
BsuRI GGCC 3 cut(s) 244, 291, 440
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 3 cut(s) 164, 222, 353
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 243
Csp6I GTAC 1 cut(s) 78
CviAII CATG 3 cut(s) 40, 81, 192
CviJI RGCY 9 cut(s) 166, 176, 214, 244, 291, 343, 355, 440, 476
CviKI_1 RGCY 9 cut(s) 166, 176, 214, 244, 291, 343, 355, 440, 476
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 3 cut(s) 183, 225, 372
EaeI YGGCCR 1 cut(s) 438
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 202
FaeI CATG 3 cut(s) 43, 84, 195
FaiI YATR 7 cut(s) 35, 41, 82, 173, 193, 318, 426
FaqI GGGAC 1 cut(s) 325
FatI CATG 3 cut(s) 39, 80, 191
GsaI CCCAGC 2 cut(s) 50, 77
HaeIII GGCC 3 cut(s) 244, 291, 440
HapII CCGG 3 cut(s) 29, 159, 288
Hin1II CATG 3 cut(s) 43, 84, 195
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 1 cut(s) 489
HpaII CCGG 3 cut(s) 29, 159, 288
HphI GGTGA 3 cut(s) 18, 388, 442
Hpy188I TCNGA 6 cut(s) 186, 306, 348, 435, 471, 494
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 3 cut(s) 92, 133, 178
HpyCH4IV ACGT 2 cut(s) 132, 314
HpyCH4V TGCA 3 cut(s) 43, 220, 323
HpyF3I CTNAG 3 cut(s) 183, 225, 372
HpySE526I ACGT 2 cut(s) 132, 314
Hsp92II CATG 3 cut(s) 43, 84, 195
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 8 cut(s) 42, 59, 60, 172, 192, 264, 301, 466
LweI GCATC 2 cut(s) 32, 310
MaeII ACGT 2 cut(s) 132, 314
MaeIII GTNAC 1 cut(s) 10
MboII GAAGA 4 cut(s) 199, 338, 425, 449
MhlI GDGCHC 1 cut(s) 141
MlsI TGGCCA 1 cut(s) 440
MluCI AATT 4 cut(s) 145, 197, 202, 416
MluNI TGGCCA 1 cut(s) 440
MnlI CCTC 4 cut(s) 152, 234, 421, 487
Mox20I TGGCCA 1 cut(s) 440
MscI TGGCCA 1 cut(s) 440
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 38
Msp20I TGGCCA 1 cut(s) 440
MspI CCGG 3 cut(s) 29, 159, 288
NlaIII CATG 3 cut(s) 43, 84, 195
NlaIV GGNNCC 2 cut(s) 213, 259
NmuCI GTSAC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 489
PspFI CCCAGC 2 cut(s) 46, 73
PspN4I GGNNCC 2 cut(s) 213, 259
PspPI GGNCC 1 cut(s) 243
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 1 cut(s) 399
Sau96I GGNCC 1 cut(s) 243
SduI GDGCHC 1 cut(s) 141
SetI ASST 9 cut(s) 103, 135, 144, 178, 317, 345, 357, 378, 432
SfaNI GCATC 2 cut(s) 32, 310
SfcI CTRYAG 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 4 cut(s) 145, 197, 202, 416
TaiI ACGT 2 cut(s) 135, 317
TaqI TCGA 2 cut(s) 135, 297
TasI AATT 4 cut(s) 145, 197, 202, 416
TfiI GAWTC 1 cut(s) 489
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 2 cut(s) 160, 426
TspRI CASTG 1 cut(s) 19
XapI RAATTY 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.