pycom05g21710

UPF0678 fatty acid-binding protein-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
24278050 .. 24280277
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g21710.3

Sequence Viewer

Length: 495 bp
ATGGAGGGTGTCACTACTACAGCATCACCGGACATGCCCATGCACCCAGCATTAGGACCAATCTCGTATCTGCTGGGTACATGGAAAGGACAAGGAGAAGGTGGGTTTCCCACCATCAACTCCTTCTCTTACGTCGAGCAACTCAATTTCTCTCATTCCGGCAAGCCCTTCATAGCTTACACTCAGAAGACATGGAAATTGAATTCTGGGGAGCCAATGCACGCTGAGAGTGGGTTTTGGAGGCCCAAACCAGATGGTTCCATTGAAGTTGTCATTTCTCAAAGCACCGGCCTTGTCGAAGTTCAGAAAGGGACGTATGATGCAGAAGAGAAAGTAATAAAGCTTCAGAGCGAGCTTGTGGGCAATGCTTCTAAGGTGAGAGAGATAACCCGAGTTTTTAAGTTGGTAGATGAAGAATTATCTTATGAGGTTCAGATGGCCACAAATCTCACCAGTCTTCAACCACATCTGAAAGCTTCACTCAAAAGAATCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

165

Amino Acids

18.13

Weight (kDa)

6.09

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013155)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 438
AcsI RAATTY 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 3 cut(s) 202, 266, 461
AluBI AGCT 4 cut(s) 176, 343, 355, 476
AluI AGCT 4 cut(s) 176, 343, 355, 476
Ama87I CYCGRG 1 cut(s) 390
AoxI GGCC 3 cut(s) 242, 289, 438
ApoI RAATTY 1 cut(s) 202
AspS9I GGNCC 2 cut(s) 56, 243
AsuHPI GGTGA 3 cut(s) 18, 388, 442
AvaI CYCGRG 1 cut(s) 390
AvaII GGWCC 1 cut(s) 56
BalI TGGCCA 1 cut(s) 440
BarI GAAGNNNNNNTAC 2 cut(s) 327, 359
BbsI GAAGAC 2 cut(s) 194, 449
BccI CCATC 3 cut(s) 122, 248, 430
BfmI CTRYAG 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 56
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 2 cut(s) 56, 243
BmiI GGNNCC 2 cut(s) 213, 259
BmsI GCATC 2 cut(s) 32, 310
BpiI GAAGAC 2 cut(s) 194, 449
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 453
Bse3DI GCAATG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 2 cut(s) 197, 216
BseNI ACTGG 1 cut(s) 453
BseYI CCCAGC 2 cut(s) 46, 73
BshFI GGCC 3 cut(s) 244, 291, 440
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 3 cut(s) 29, 159, 288
BslFI GGGAC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 325
BsnI GGCC 3 cut(s) 244, 291, 440
BsoBI CYCGRG 1 cut(s) 390
BspANI GGCC 3 cut(s) 244, 291, 440
BspCNI CTCAG 2 cut(s) 196, 217
BspLI GGNNCC 2 cut(s) 213, 259
BsrDI GCAATG 1 cut(s) 370
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 1 cut(s) 453
BssAI RCCGGY 1 cut(s) 287
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 3 cut(s) 164, 222, 353
BstDEI CTNAG 3 cut(s) 183, 225, 372
BstNSI RCATGY 1 cut(s) 37
BstSFI CTRYAG 1 cut(s) 18
BstV2I GAAGAC 2 cut(s) 194, 449
BsuRI GGCC 3 cut(s) 244, 291, 440
Cac8I GCNNGC 3 cut(s) 164, 222, 353
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 2 cut(s) 56, 243
Csp6I GTAC 1 cut(s) 78
CviAII CATG 4 cut(s) 34, 40, 81, 192
CviJI RGCY 9 cut(s) 166, 176, 214, 244, 291, 343, 355, 440, 476
CviKI_1 RGCY 9 cut(s) 166, 176, 214, 244, 291, 343, 355, 440, 476
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 3 cut(s) 183, 225, 372
EaeI YGGCCR 1 cut(s) 438
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 202
FaeI CATG 4 cut(s) 37, 43, 84, 195
FaiI YATR 7 cut(s) 35, 41, 82, 173, 193, 318, 426
FaqI GGGAC 1 cut(s) 325
FatI CATG 4 cut(s) 33, 39, 80, 191
GsaI CCCAGC 2 cut(s) 50, 77
HaeIII GGCC 3 cut(s) 244, 291, 440
HapII CCGG 3 cut(s) 29, 159, 288
Hin1II CATG 4 cut(s) 37, 43, 84, 195
HindIII AAGCTT 2 cut(s) 341, 474
HinfI GANTC 1 cut(s) 489
HpaII CCGG 3 cut(s) 29, 159, 288
HphI GGTGA 3 cut(s) 18, 388, 442
Hpy188I TCNGA 6 cut(s) 186, 306, 348, 435, 471, 494
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 3 cut(s) 92, 133, 178
HpyCH4IV ACGT 2 cut(s) 132, 314
HpyCH4V TGCA 3 cut(s) 43, 220, 323
HpyF3I CTNAG 3 cut(s) 183, 225, 372
HpySE526I ACGT 2 cut(s) 132, 314
Hsp92II CATG 4 cut(s) 37, 43, 84, 195
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 8 cut(s) 42, 59, 60, 172, 192, 264, 301, 466
LweI GCATC 2 cut(s) 32, 310
MaeII ACGT 2 cut(s) 132, 314
MaeIII GTNAC 1 cut(s) 10
MboII GAAGA 4 cut(s) 199, 338, 425, 449
MlsI TGGCCA 1 cut(s) 440
MluCI AATT 4 cut(s) 145, 197, 202, 416
MluNI TGGCCA 1 cut(s) 440
MnlI CCTC 2 cut(s) 234, 421
Mox20I TGGCCA 1 cut(s) 440
MscI TGGCCA 1 cut(s) 440
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 38
Msp20I TGGCCA 1 cut(s) 440
MspI CCGG 3 cut(s) 29, 159, 288
NlaIII CATG 4 cut(s) 37, 43, 84, 195
NlaIV GGNNCC 2 cut(s) 213, 259
NmuCI GTSAC 1 cut(s) 10
NspI RCATGY 1 cut(s) 37
PfeI GAWTC 1 cut(s) 489
PspFI CCCAGC 2 cut(s) 46, 73
PspN4I GGNNCC 2 cut(s) 213, 259
PspPI GGNCC 2 cut(s) 56, 243
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 1 cut(s) 399
Sau96I GGNCC 2 cut(s) 56, 243
SetI ASST 9 cut(s) 103, 135, 178, 317, 345, 357, 378, 432, 478
SfaNI GCATC 2 cut(s) 32, 310
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 4 cut(s) 145, 197, 202, 416
TaiI ACGT 2 cut(s) 135, 317
TaqI TCGA 2 cut(s) 135, 297
TasI AATT 4 cut(s) 145, 197, 202, 416
TfiI GAWTC 1 cut(s) 489
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TseFI GTSAC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 2 cut(s) 160, 426
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 1 cut(s) 202
XceI RCATGY 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.