AT1G79270

evolutionarily conserved C-terminal region 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006572
Physical Location & Seq
Forward (+)
29815470 .. 29819678
4209 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79270.2

Sequence Viewer

Length: 1587 bp
ATGACTTCTCATGTTCCAAAACATCCTCGTAAATCCTTTGAAGATATGGTGAAGAATCTTAAAGTGGATCCTCTTGCTAAGGTCACTGCCTCCACCACTTCCATGGTTTCTGCAAAAGAGAATAAGAATCAGTCAGAGGCAGAGCCATCATATTATGAAACTCTTGAGACATATCAAGGCCTGCCTTGTCCTTATGGTGGCTACTATGGATACTACTATCCAGGTCTTGATGGTTCAGTTGGAGAAGCAAAGGATAATGGATACTATGGTTATGGAACAGAAGTTCAGTACCCGGTAATGCAAGGGGAAAATGGGTCTGTGATCTACTTGATGCCAGGGTTTCAGTCTTATGATGCAAGCCAAACTTATATGCCTATAAACCCGGTTGGTGTATCGAGTCAAGCACTTCATTCGCCGATGTATGCTGCTCAGGGTTATTATCAGAACCAATTTGGTTATGCAGATGTTTCATCGCCCACATATTTATGGGACCCTGTTGGAGACAGGTATGTGTATGGTGTTGCTTCATATACCCCACCCTTGAAACAGAACATATCTTCTTCAAGTCATAACCACAACAATTATTATTCAAAGAGCAAGAACTCCTTCACGGGTCACGGCATGGGAGATCGTCCTAAAACACCGCGAAAAGCATCACAGAACAGCTATGCCCCACCCCCACTGCTTAACCAAGAAAAAGGTCGCATTGCTTACCCGATGGACCCAGTAAAGAAAAAGTCTGGAGCTTTAAATCGGGATGAAACAGAGAAGGCGAAAGCGAGGACAAAAGAAAATGGTACAAGTATGAATGACTTAGCAAACGGTCAAGATCATATTACCAATGGAGAATGTGAGTCATGTTCGTTGGATGCTGAAGGGAATGAAAGAAGCAACGGTGTTGGTTCTGTGATCAGAAGGGATCAATATAACCTCCCTAGCTTTCAGACCAAATACGAGGAAGCAATCTTTTTTGTGATAAAATCGTATAGCGAAGACGACATACACAAGAGCATCAAGTACAATGTCTGGTCTAGTACTCTCAATGGGAACAAGAAGTTAGACAGTGCATATCAAGAATCTCAGAAGAAGGCTGCAGACAAAAGTGGAAAGTGCCCGGTTTTCCTGTTCTTCTCGGTGAATGCAAGTGGCCAATTCTGCGGTGTAGCTGAGATGATTGGACGAGTTGATTATGAGAAAAGCATGGAGTTCTGGCAACAAGATAAGTGGACTGGCTATTTTCCGGTGAAGTGGCACATCATCAAAGATGTTCCAAATCCGCAACTACGACATATCATACTAGAGAACAATGAGAACAAGCCTGTAACCAATAGCAGAGACACACAAGAGGTGAGGTTGCCTCAAGGGAATGAAGTGTTGAACATCTTTAAGAACTACGCAGCTAAGACATCTATTTTAGATGATTTTGATTTTTATGAAAACAGAGAGAAGGTTATGGTACAGAAGAAGCTAAGGTTCCCTCCGGTATTAAAGAAGAAAGAAGAAGACTTGGTTGCTGATTTTAAAACAATGGAGATGTCTAATACAGTCGAAGAGGGAAACACAGAGTTAACCGGGACAGTGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

528

Amino Acids

59.55

Weight (kDa)

6.26

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 307 - 448 1.7e-47 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 646
AciI CCGC 3 cut(s) 644, 1158, 1277
AclWI GGATC 3 cut(s) 62, 75, 927
AcoI YGGCCR 1 cut(s) 1147
AcuI CTGAAG 1 cut(s) 894
AfaI GTAC 5 cut(s) 290, 799, 1019, 1036, 1458
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 5 cut(s) 41, 544, 564, 591, 1378
AjnI CCWGG 2 cut(s) 220, 334
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 7 cut(s) 666, 746, 939, 1166, 1400, 1468, 1584
AluI AGCT 7 cut(s) 666, 746, 939, 1166, 1400, 1468, 1584
Alw26I GTCTC 3 cut(s) 161, 495, 1329
AlwI GGATC 3 cut(s) 62, 75, 927
AoxI GGCC 2 cut(s) 178, 1147
ApeKI GCWGC 3 cut(s) 425, 1091, 1397
Asp700I GAANNNNTTC 1 cut(s) 605
AspS9I GGNCC 2 cut(s) 490, 721
AsuC2I CCSGG 4 cut(s) 293, 383, 1115, 1573
AsuHPI GGTGA 4 cut(s) 61, 1147, 1255, 1360
AvaII GGWCC 2 cut(s) 490, 721
BaeGI GKGCMC 1 cut(s) 1115
BaeI ACNNNNGTAYC 2 cut(s) 253, 286
BalI TGGCCA 1 cut(s) 1149
BamHI GGATCC 1 cut(s) 67
BarI GAAGNNNNNNTAC 2 cut(s) 984, 1016
BbsI GAAGAC 2 cut(s) 999, 1509
BbvI GCAGC 3 cut(s) 412, 1078, 1409
BccI CCATC 3 cut(s) 154, 224, 712
BceAI ACGGC 1 cut(s) 634
BcgI CGANNNNNNTGC 2 cut(s) 393, 427
BciT130I CCWGG 2 cut(s) 222, 336
BciVI GTATCC 2 cut(s) 203, 254
BclI TGATCA 1 cut(s) 909
BcnI CCSGG 4 cut(s) 293, 383, 1115, 1573
BcoDI GTCTC 3 cut(s) 161, 495, 1329
BfaI CTAG 3 cut(s) 936, 1032, 1298
BfmI CTRYAG 1 cut(s) 1092
BfuI GTATCC 2 cut(s) 203, 254
BisI GCNGC 3 cut(s) 426, 1092, 1398
BlsI GCNGC 3 cut(s) 427, 1093, 1399
BmcAI AGTACT 1 cut(s) 1036
Bme1390I CCNGG 6 cut(s) 222, 293, 336, 383, 1115, 1573
Bme18I GGWCC 2 cut(s) 490, 721
BmgT120I GGNCC 2 cut(s) 490, 721
BmiI GGNNCC 5 cut(s) 69, 491, 492, 723, 1475
BmrFI CCNGG 6 cut(s) 222, 293, 336, 383, 1115, 1573
BmrI ACTGGG 1 cut(s) 719
BmsI GCATC 5 cut(s) 321, 343, 662, 859, 1020
BmuI ACTGGG 1 cut(s) 719
BpiI GAAGAC 2 cut(s) 999, 1509
BplI GAGNNNNNCTC 2 cut(s) 1342, 1374
BpmI CTGGAG 1 cut(s) 762
Bpu10I CCTNAGC 3 cut(s) 78, 429, 1469
BpuEI CTTGAG 2 cut(s) 185, 1344
BpuMI CCSGG 4 cut(s) 293, 383, 1115, 1573
BsaJI CCNNGG 2 cut(s) 102, 335
BsaWI WCCGGW 2 cut(s) 1240, 1480
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 725, 1234
Bse3DI GCAATG 1 cut(s) 705
BseBI CCWGG 2 cut(s) 222, 336
BseDI CCNNGG 2 cut(s) 102, 335
BseGI GGATG 3 cut(s) 22, 763, 874
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 705
BseMII CTCAG 3 cut(s) 443, 1094, 1158
BseNI ACTGG 2 cut(s) 725, 1234
BseSI GKGCMC 1 cut(s) 1115
BseXI GCAGC 3 cut(s) 412, 1078, 1409
Bsh1236I CGCG 1 cut(s) 646
BshFI GGCC 2 cut(s) 180, 1149
BsiSI CCGG 6 cut(s) 293, 383, 1115, 1241, 1481, 1572
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 3 cut(s) 161, 495, 1329
BsmFI GGGAC 1 cut(s) 503
BsmI GAATGC 1 cut(s) 1144
BsnI GGCC 2 cut(s) 180, 1149
Bsp1286I GDGCHC 1 cut(s) 1115
Bsp143I GATC 6 cut(s) 67, 321, 628, 829, 909, 919
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 3 cut(s) 644, 1158, 1277
BspANI GGCC 2 cut(s) 180, 1149
BspCNI CTCAG 3 cut(s) 442, 1093, 1159
BspFNI CGCG 1 cut(s) 646
BspLI GGNNCC 5 cut(s) 69, 491, 492, 723, 1475
BspMAI CTGCAG 1 cut(s) 1096
BspPI GGATC 3 cut(s) 62, 75, 927
BsrDI GCAATG 1 cut(s) 705
BsrI ACTGG 2 cut(s) 725, 1234
BssECI CCNNGG 2 cut(s) 102, 335
BssMI GATC 6 cut(s) 67, 321, 628, 829, 909, 919
BssT1I CCWWGG 1 cut(s) 102
Bst2UI CCWGG 2 cut(s) 222, 336
Bst4CI ACNGT 5 cut(s) 824, 896, 1064, 1546, 1579
Bst6I CTCTTC 1 cut(s) 1545
BstC8I GCNNGC 2 cut(s) 182, 358
BstDEI CTNAG 7 cut(s) 78, 429, 814, 1080, 1167, 1401, 1469
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 3 cut(s) 22, 763, 874
BstFNI CGCG 1 cut(s) 646
BstKTI GATC 6 cut(s) 70, 324, 631, 832, 912, 922
BstMAI GTCTC 3 cut(s) 161, 495, 1329
BstMBI GATC 6 cut(s) 67, 321, 628, 829, 909, 919
BstMWI GCNNNNNNNGC 1 cut(s) 1155
BstNI CCWGG 2 cut(s) 222, 336
BstSCI CCNGG 6 cut(s) 220, 291, 334, 381, 1113, 1571
BstSFI CTRYAG 1 cut(s) 1092
BstSLI GKGCMC 1 cut(s) 1115
BstUI CGCG 1 cut(s) 646
BstV1I GCAGC 3 cut(s) 412, 1078, 1409
BstV2I GAAGAC 2 cut(s) 999, 1509
BstX2I RGATCY 1 cut(s) 67
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 67
BsuI GTATCC 2 cut(s) 203, 254
BsuRI GGCC 2 cut(s) 180, 1149
BtgI CCRYGG 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 3 cut(s) 22, 763, 874
BtsI GCAGTG 2 cut(s) 84, 680
BtsIMutI CAGTG 4 cut(s) 84, 680, 1069, 1584
Cac8I GCNNGC 2 cut(s) 182, 358
Cfr13I GGNCC 2 cut(s) 490, 721
Csp6I GTAC 5 cut(s) 289, 798, 1018, 1035, 1457
CspCI CAANNNNNGTGG 2 cut(s) 1205, 1240
CviAII CATG 5 cut(s) 11, 103, 622, 858, 1201
CviQI GTAC 5 cut(s) 289, 798, 1018, 1035, 1457
DdeI CTNAG 7 cut(s) 78, 429, 814, 1080, 1167, 1401, 1469
DpnI GATC 6 cut(s) 69, 323, 630, 831, 911, 921
DpnII GATC 6 cut(s) 67, 321, 628, 829, 909, 919
DraI TTTAAA 2 cut(s) 750, 1522
EaeI YGGCCR 1 cut(s) 1147
Eam1104I CTCTTC 1 cut(s) 1545
EarI CTCTTC 1 cut(s) 1545
Eco130I CCWWGG 1 cut(s) 102
Eco147I AGGCCT 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 490, 721
Eco57I CTGAAG 1 cut(s) 894
EcoO109I RGGNCCY 1 cut(s) 490
EcoRII CCWGG 2 cut(s) 220, 334
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 5 cut(s) 14, 106, 625, 861, 1204
FalI AAGNNNNNCTT 4 cut(s) 349, 381, 590, 622
FaqI GGGAC 1 cut(s) 503
FatI CATG 5 cut(s) 10, 102, 621, 857, 1200
FbaI TGATCA 1 cut(s) 909
Fnu4HI GCNGC 3 cut(s) 426, 1092, 1398
FokI GGATG 3 cut(s) 9, 770, 881
Fsp4HI GCNGC 3 cut(s) 426, 1092, 1398
FspBI CTAG 3 cut(s) 936, 1032, 1298
GluI GCNGC 3 cut(s) 426, 1092, 1398
GsuI CTGGAG 1 cut(s) 762
HaeIII GGCC 2 cut(s) 180, 1149
HapII CCGG 6 cut(s) 293, 383, 1115, 1241, 1481, 1572
Hin1II CATG 5 cut(s) 14, 106, 625, 861, 1204
HincII GTYRAC 1 cut(s) 1569
HindII GTYRAC 1 cut(s) 1569
HinfI GANTC 5 cut(s) 55, 127, 397, 854, 1076
HpaI GTTAAC 1 cut(s) 1569
HpaII CCGG 6 cut(s) 293, 383, 1115, 1241, 1481, 1572
HphI GGTGA 4 cut(s) 61, 1147, 1255, 1360
Hpy166II GTNNAC 2 cut(s) 1227, 1569
Hpy188I TCNGA 5 cut(s) 136, 444, 914, 945, 1083
Hpy188III TCNNGA 6 cut(s) 164, 227, 741, 755, 827, 1073
Hpy8I GTNNAC 2 cut(s) 1227, 1569
HpyAV CCTTC 6 cut(s) 616, 763, 869, 909, 1081, 1441
HpyCH4III ACNGT 5 cut(s) 824, 896, 1064, 1546, 1579
HpyCH4V TGCA 7 cut(s) 113, 301, 356, 461, 1067, 1094, 1142
HpyF10VI GCNNNNNNNGC 1 cut(s) 1155
HpyF3I CTNAG 7 cut(s) 78, 429, 814, 1080, 1167, 1401, 1469
Hsp92II CATG 5 cut(s) 14, 106, 625, 861, 1204
KflI GGGWCCC 1 cut(s) 490
Ksp22I TGATCA 1 cut(s) 909
KspAI GTTAAC 1 cut(s) 1569
Kzo9I GATC 6 cut(s) 67, 321, 628, 829, 909, 919
LmnI GCTCC 1 cut(s) 743
Lsp1109I GCAGC 3 cut(s) 412, 1078, 1409
LweI GCATC 5 cut(s) 321, 343, 662, 859, 1020
MaeI CTAG 3 cut(s) 936, 1032, 1298
MaeIII GTNAC 3 cut(s) 82, 614, 1321
MalI GATC 6 cut(s) 69, 323, 630, 831, 911, 921
MboI GATC 6 cut(s) 67, 321, 628, 829, 909, 919
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 1115
MlsI TGGCCA 1 cut(s) 1149
MluCI AATT 3 cut(s) 449, 580, 1151
MluNI TGGCCA 1 cut(s) 1149
MlyI GAGTC 2 cut(s) 406, 863
MmeI TCCRAC 3 cut(s) 220, 478, 846
Mox20I TGGCCA 1 cut(s) 1149
MroXI GAANNNNTTC 1 cut(s) 605
MscI TGGCCA 1 cut(s) 1149
MseI TTAA 7 cut(s) 60, 687, 749, 1386, 1487, 1521, 1568
MslI CAYNNNNRTG 2 cut(s) 101, 484
Msp20I TGGCCA 1 cut(s) 1149
MspI CCGG 6 cut(s) 293, 383, 1115, 1241, 1481, 1572
MspR9I CCNGG 6 cut(s) 222, 293, 336, 383, 1115, 1573
Mva1269I GAATGC 1 cut(s) 1144
MvaI CCWGG 2 cut(s) 222, 336
MvnI CGCG 1 cut(s) 646
MwoI GCNNNNNNNGC 1 cut(s) 1155
NciI CCSGG 4 cut(s) 293, 383, 1115, 1573
NcoI CCATGG 1 cut(s) 102
NdeII GATC 6 cut(s) 67, 321, 628, 829, 909, 919
NlaIII CATG 5 cut(s) 14, 106, 625, 861, 1204
NlaIV GGNNCC 5 cut(s) 69, 491, 492, 723, 1475
NmuCI GTSAC 2 cut(s) 82, 614
PceI AGGCCT 1 cut(s) 180
PctI GAATGC 1 cut(s) 1144
PdmI GAANNNNTTC 1 cut(s) 605
PfeI GAWTC 3 cut(s) 55, 127, 1076
PkrI GCNGC 3 cut(s) 427, 1093, 1399
PleI GAGTC 2 cut(s) 405, 862
PpsI GAGTC 2 cut(s) 405, 862
PpuMI RGGWCCY 1 cut(s) 490
Psp5II RGGWCCY 1 cut(s) 490
Psp6I CCWGG 2 cut(s) 220, 334
PspGI CCWGG 2 cut(s) 220, 334
PspN4I GGNNCC 5 cut(s) 69, 491, 492, 723, 1475
PspPI GGNCC 2 cut(s) 490, 721
PspPPI RGGWCCY 1 cut(s) 490
PstI CTGCAG 1 cut(s) 1096
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 5 cut(s) 290, 799, 1019, 1036, 1458
RsaNI GTAC 5 cut(s) 289, 798, 1018, 1035, 1457
RseI CAYNNNNRTG 2 cut(s) 101, 484
SaqAI TTAA 7 cut(s) 60, 687, 749, 1386, 1487, 1521, 1568
SatI GCNGC 3 cut(s) 426, 1092, 1398
Sau3AI GATC 6 cut(s) 67, 321, 628, 829, 909, 919
Sau96I GGNCC 2 cut(s) 490, 721
ScaI AGTACT 1 cut(s) 1036
SchI GAGTC 2 cut(s) 406, 863
ScrFI CCNGG 6 cut(s) 222, 293, 336, 383, 1115, 1573
SduI GDGCHC 1 cut(s) 1115
SfaNI GCATC 5 cut(s) 321, 343, 662, 859, 1020
SfcI CTRYAG 1 cut(s) 1092
SinI GGWCC 2 cut(s) 490, 721
SmiMI CAYNNNNRTG 2 cut(s) 101, 484
SmlI CTYRAG 2 cut(s) 164, 1359
SmoI CTYRAG 2 cut(s) 164, 1359
Sse9I AATT 3 cut(s) 449, 580, 1151
SseBI AGGCCT 1 cut(s) 180
SsiI CCGC 3 cut(s) 644, 1158, 1277
SspMI CTAG 3 cut(s) 936, 1032, 1298
StuI AGGCCT 1 cut(s) 180
StyD4I CCNGG 6 cut(s) 220, 291, 334, 381, 1113, 1571
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 5 cut(s) 824, 896, 1064, 1546, 1579
TaqI TCGA 2 cut(s) 395, 1548
TasI AATT 3 cut(s) 449, 580, 1151
TatI WGTACW 2 cut(s) 1017, 1034
TfiI GAWTC 3 cut(s) 55, 127, 1076
Tru1I TTAA 7 cut(s) 60, 687, 749, 1386, 1487, 1521, 1568
Tru9I TTAA 7 cut(s) 60, 687, 749, 1386, 1487, 1521, 1568
TscAI CASTG 4 cut(s) 91, 687, 1069, 1584
TseFI GTSAC 2 cut(s) 82, 614
TseI GCWGC 3 cut(s) 425, 1091, 1397
Tsp45I GTSAC 2 cut(s) 82, 614
TspDTI ATGAA 9 cut(s) 171, 398, 459, 516, 774, 821, 897, 1383, 1449
TspRI CASTG 4 cut(s) 91, 687, 1069, 1584
VpaK11BI GGWCC 2 cut(s) 490, 721
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 605
XspI CTAG 3 cut(s) 936, 1032, 1298
ZrmI AGTACT 1 cut(s) 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.