YTH domain-containing family protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G79270 AT1G79270 AT1G79270 AT1G79270 |
| fragaria_vesca | FvH4_3g13840 FvH4_3g13840 FvH4_3g13840 FvH4_3g13840 |
| malus_domestica | MD05G1240700.v1.1 MD10G1219100.v1.1 |
| prunus_persica | Prupe.4G124900_v2.0.a1 Prupe.4G124900_v2.0.a1 |
| pyrus_communis | pycom05g21690 pycom10g18460 |
| rosa_chinensis | RchiOBHm_Chr5g0023021 |
| rosa_laevigata | RLG00000032691 |
| rosa_multiflora | Rmu_co8478305.1_g000001 Rmu_sc0002675.1_g000016 Rmu_sc0003441.1_g000099 |
| rosa_roxburghii | Rroxscaffold_1G00056290 |
| rosa_rugosa | Rorug05G0076600 |
| rosa_samantha | Rh5AG162900 Rh5BG162100 Rh5CG176800 Rh5DG163400 |
| rosa_wichuraiana | Rw5G014690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1410 |
| AccI | GTMKAC | 2 cut(s) | 360, 1619 |
| AciI | CCGC | 3 cut(s) | 303, 1418, 1582 |
| AclWI | GGATC | 8 cut(s) | 300, 313, 358, 386, 554, 567, 1068, 1616 |
| AcoI | YGGCCR | 1 cut(s) | 1318 |
| AcsI | RAATTY | 2 cut(s) | 89, 1493 |
| AcuI | CTGAAG | 2 cut(s) | 729, 1484 |
| AcyI | GRCGYC | 1 cut(s) | 1407 |
| AfaI | GTAC | 4 cut(s) | 482, 750, 1160, 1177 |
| AfeI | AGCGCT | 1 cut(s) | 1669 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 118, 1588 |
| AflIII | ACRYGT | 1 cut(s) | 73 |
| AgsI | TTSAA | 5 cut(s) | 20, 80, 698, 907, 1511 |
| AjnI | CCWGG | 4 cut(s) | 265, 370, 382, 499 |
| AleI | CACNNNNGTG | 1 cut(s) | 657 |
| AluBI | AGCT | 3 cut(s) | 488, 1245, 1307 |
| AluI | AGCT | 3 cut(s) | 488, 1245, 1307 |
| Alw21I | GWGCWC | 2 cut(s) | 664, 715 |
| Alw26I | GTCTC | 1 cut(s) | 1470 |
| Alw44I | GTGCAC | 1 cut(s) | 711 |
| AlwI | GGATC | 8 cut(s) | 300, 313, 358, 386, 554, 567, 1068, 1616 |
| Aor51HI | AGCGCT | 1 cut(s) | 1669 |
| AoxI | GGCC | 3 cut(s) | 108, 967, 1318 |
| ApaI | GGGCCC | 1 cut(s) | 112 |
| ApaLI | GTGCAC | 1 cut(s) | 711 |
| ApeKI | GCWGC | 3 cut(s) | 5, 1245, 1639 |
| ApoI | RAATTY | 2 cut(s) | 89, 1493 |
| AspLEI | GCGC | 1 cut(s) | 1670 |
| AspS9I | GGNCC | 3 cut(s) | 108, 109, 968 |
| AsuC2I | CCSGG | 1 cut(s) | 310 |
| AsuHPI | GGTGA | 5 cut(s) | 203, 537, 849, 1501, 1603 |
| BaeGI | GKGCMC | 3 cut(s) | 112, 715, 757 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 443, 476 |
| BamHI | GGATCC | 2 cut(s) | 305, 559 |
| BanII | GRGCYC | 1 cut(s) | 112 |
| Bbv12I | GWGCWC | 2 cut(s) | 664, 715 |
| BbvI | GCAGC | 2 cut(s) | 1232, 1651 |
| BccI | CCATC | 8 cut(s) | 116, 139, 307, 428, 550, 571, 572, 1058 |
| BceAI | ACGGC | 3 cut(s) | 268, 1305, 1442 |
| BciT130I | CCWGG | 4 cut(s) | 267, 372, 384, 501 |
| BciVI | GTATCC | 4 cut(s) | 284, 471, 773, 782 |
| BcnI | CCSGG | 1 cut(s) | 310 |
| BcoDI | GTCTC | 1 cut(s) | 1470 |
| BfaI | CTAG | 5 cut(s) | 633, 648, 779, 972, 1173 |
| BfmI | CTRYAG | 2 cut(s) | 420, 1637 |
| BfoI | RGCGCY | 1 cut(s) | 1671 |
| BfuI | GTATCC | 4 cut(s) | 284, 471, 773, 782 |
| BisI | GCNGC | 4 cut(s) | 6, 1246, 1582, 1640 |
| BlsI | GCNGC | 4 cut(s) | 7, 1247, 1583, 1641 |
| BmcAI | AGTACT | 1 cut(s) | 1177 |
| Bme1390I | CCNGG | 5 cut(s) | 267, 310, 372, 384, 501 |
| BmgT120I | GGNCC | 3 cut(s) | 108, 109, 968 |
| BmiI | GGNNCC | 4 cut(s) | 110, 307, 561, 810 |
| BmrFI | CCNGG | 5 cut(s) | 267, 310, 372, 384, 501 |
| BmrI | ACTGGG | 1 cut(s) | 1376 |
| BmsI | GCATC | 9 cut(s) | 152, 184, 190, 196, 309, 357, 1161, 1207, 1584 |
| BmuI | ACTGGG | 1 cut(s) | 1376 |
| BpmI | CTGGAG | 1 cut(s) | 1026 |
| BpuEI | CTTGAG | 1 cut(s) | 1460 |
| BpuMI | CCSGG | 1 cut(s) | 310 |
| BsaAI | YACGTR | 1 cut(s) | 752 |
| BsaHI | GRCGYC | 1 cut(s) | 1407 |
| BsaJI | CCNNGG | 5 cut(s) | 117, 286, 499, 823, 964 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 118, 1588 |
| Bse1I | ACTGG | 5 cut(s) | 177, 731, 835, 1382, 1560 |
| BseBI | CCWGG | 4 cut(s) | 267, 372, 384, 501 |
| BseDI | CCNNGG | 5 cut(s) | 117, 286, 499, 823, 964 |
| BseGI | GGATG | 4 cut(s) | 127, 318, 697, 1141 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 118, 1588 |
| BseMII | CTCAG | 4 cut(s) | 484, 888, 1299, 1662 |
| BseNI | ACTGG | 5 cut(s) | 177, 731, 835, 1382, 1560 |
| BseRI | GAGGAG | 1 cut(s) | 1238 |
| BseSI | GKGCMC | 3 cut(s) | 112, 715, 757 |
| BseXI | GCAGC | 2 cut(s) | 1232, 1651 |
| BshFI | GGCC | 3 cut(s) | 110, 969, 1320 |
| BsiHKAI | GWGCWC | 2 cut(s) | 664, 715 |
| BsiSI | CCGG | 1 cut(s) | 309 |
| BslFI | GGGAC | 4 cut(s) | 524, 841, 1239, 1394 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 118, 1588 |
| BsmAI | GTCTC | 1 cut(s) | 1470 |
| BsmFI | GGGAC | 4 cut(s) | 524, 841, 1239, 1394 |
| BsnI | GGCC | 3 cut(s) | 110, 969, 1320 |
| Bsp120I | GGGCCC | 1 cut(s) | 108 |
| Bsp1286I | GDGCHC | 4 cut(s) | 112, 664, 715, 757 |
| Bsp143I | GATC | 7 cut(s) | 305, 350, 391, 559, 1060, 1608, 1633 |
| Bsp19I | CCATGG | 1 cut(s) | 964 |
| BspACI | CCGC | 3 cut(s) | 303, 1418, 1582 |
| BspANI | GGCC | 3 cut(s) | 110, 969, 1320 |
| BspCNI | CTCAG | 4 cut(s) | 483, 889, 1300, 1663 |
| BspLI | GGNNCC | 4 cut(s) | 110, 307, 561, 810 |
| BspMAI | CTGCAG | 1 cut(s) | 1641 |
| BspPI | GGATC | 8 cut(s) | 300, 313, 358, 386, 554, 567, 1068, 1616 |
| BsrI | ACTGG | 5 cut(s) | 177, 731, 835, 1382, 1560 |
| BssECI | CCNNGG | 5 cut(s) | 117, 286, 499, 823, 964 |
| BssMI | GATC | 7 cut(s) | 305, 350, 391, 559, 1060, 1608, 1633 |
| BssNI | GRCGYC | 1 cut(s) | 1407 |
| BssT1I | CCWWGG | 4 cut(s) | 117, 286, 823, 964 |
| Bst2UI | CCWGG | 4 cut(s) | 267, 372, 384, 501 |
| Bst4CI | ACNGT | 6 cut(s) | 160, 424, 669, 687, 1130, 1205 |
| Bst6I | CTCTTC | 3 cut(s) | 522, 646, 1598 |
| BstACI | GRCGYC | 1 cut(s) | 1407 |
| BstBAI | YACGTR | 1 cut(s) | 752 |
| BstC8I | GCNNGC | 2 cut(s) | 339, 1101 |
| BstDEI | CTNAG | 4 cut(s) | 470, 897, 1308, 1671 |
| BstDSI | CCRYGG | 1 cut(s) | 964 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 116 |
| BstF5I | GGATG | 4 cut(s) | 127, 318, 697, 1141 |
| BstH2I | RGCGCY | 1 cut(s) | 1671 |
| BstHHI | GCGC | 1 cut(s) | 1670 |
| BstKTI | GATC | 7 cut(s) | 308, 353, 394, 562, 1063, 1611, 1636 |
| BstMAI | GTCTC | 1 cut(s) | 1470 |
| BstMBI | GATC | 7 cut(s) | 305, 350, 391, 559, 1060, 1608, 1633 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 409, 1426 |
| BstNI | CCWGG | 4 cut(s) | 267, 372, 384, 501 |
| BstNSI | RCATGY | 2 cut(s) | 77, 412 |
| BstSCI | CCNGG | 5 cut(s) | 265, 308, 370, 382, 499 |
| BstSFI | CTRYAG | 2 cut(s) | 420, 1637 |
| BstSLI | GKGCMC | 3 cut(s) | 112, 715, 757 |
| BstV1I | GCAGC | 2 cut(s) | 1232, 1651 |
| BstX2I | RGATCY | 3 cut(s) | 305, 350, 559 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 830, 1389 |
| BstYI | RGATCY | 3 cut(s) | 305, 350, 559 |
| BsuI | GTATCC | 4 cut(s) | 284, 471, 773, 782 |
| BsuRI | GGCC | 3 cut(s) | 110, 969, 1320 |
| BtgI | CCRYGG | 1 cut(s) | 964 |
| BtsCI | GGATG | 4 cut(s) | 127, 318, 697, 1141 |
| BtsI | GCAGTG | 1 cut(s) | 240 |
| BtsIMutI | CAGTG | 7 cut(s) | 84, 184, 240, 665, 738, 1135, 1210 |
| Cac8I | GCNNGC | 2 cut(s) | 339, 1101 |
| CfoI | GCGC | 1 cut(s) | 1670 |
| Cfr13I | GGNCC | 3 cut(s) | 108, 109, 968 |
| Csp6I | GTAC | 4 cut(s) | 481, 749, 1159, 1176 |
| CviAII | CATG | 7 cut(s) | 74, 147, 334, 409, 478, 965, 1342 |
| CviQI | GTAC | 4 cut(s) | 481, 749, 1159, 1176 |
| DdeI | CTNAG | 4 cut(s) | 470, 897, 1308, 1671 |
| DpnI | GATC | 7 cut(s) | 307, 352, 393, 561, 1062, 1610, 1635 |
| DpnII | GATC | 7 cut(s) | 305, 350, 391, 559, 1060, 1608, 1633 |
| DraI | TTTAAA | 3 cut(s) | 673, 867, 1528 |
| EaeI | YGGCCR | 1 cut(s) | 1318 |
| Eam1104I | CTCTTC | 3 cut(s) | 522, 646, 1598 |
| EarI | CTCTTC | 3 cut(s) | 522, 646, 1598 |
| EciI | GGCGGA | 1 cut(s) | 318 |
| Eco130I | CCWWGG | 4 cut(s) | 117, 286, 823, 964 |
| Eco24I | GRGCYC | 1 cut(s) | 112 |
| Eco47III | AGCGCT | 1 cut(s) | 1669 |
| Eco57I | CTGAAG | 2 cut(s) | 729, 1484 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 116 |
| EcoO109I | RGGNCCY | 1 cut(s) | 109 |
| EcoRI | GAATTC | 1 cut(s) | 89 |
| EcoRII | CCWGG | 4 cut(s) | 265, 370, 382, 499 |
| EcoT14I | CCWWGG | 4 cut(s) | 117, 286, 823, 964 |
| EcoT22I | ATGCAT | 1 cut(s) | 152 |
| EcoT38I | GRGCYC | 1 cut(s) | 112 |
| ErhI | CCWWGG | 4 cut(s) | 117, 286, 823, 964 |
| FaeI | CATG | 7 cut(s) | 77, 150, 337, 412, 481, 968, 1345 |
| FaqI | GGGAC | 4 cut(s) | 524, 841, 1239, 1394 |
| FatI | CATG | 7 cut(s) | 73, 146, 333, 408, 477, 964, 1341 |
| FauI | CCCGC | 1 cut(s) | 1425 |
| FblI | GTMKAC | 2 cut(s) | 360, 1619 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 1246, 1582, 1640 |
| FokI | GGATG | 4 cut(s) | 134, 325, 704, 1148 |
| FriOI | GRGCYC | 1 cut(s) | 112 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 1246, 1582, 1640 |
| FspBI | CTAG | 5 cut(s) | 633, 648, 779, 972, 1173 |
| GlaI | GCGC | 1 cut(s) | 1669 |
| GluI | GCNGC | 4 cut(s) | 6, 1246, 1582, 1640 |
| GsuI | CTGGAG | 1 cut(s) | 1026 |
| HaeII | RGCGCY | 1 cut(s) | 1671 |
| HaeIII | GGCC | 3 cut(s) | 110, 969, 1320 |
| HapII | CCGG | 1 cut(s) | 309 |
| HhaI | GCGC | 1 cut(s) | 1670 |
| Hin1I | GRCGYC | 1 cut(s) | 1407 |
| Hin1II | CATG | 7 cut(s) | 77, 150, 337, 412, 481, 968, 1345 |
| Hin6I | GCGC | 1 cut(s) | 1668 |
| HinP1I | GCGC | 1 cut(s) | 1668 |
| HincII | GTYRAC | 1 cut(s) | 452 |
| HindII | GTYRAC | 1 cut(s) | 452 |
| HinfI | GANTC | 1 cut(s) | 218 |
| HpaII | CCGG | 1 cut(s) | 309 |
| HphI | GGTGA | 5 cut(s) | 203, 537, 849, 1501, 1603 |
| Hpy166II | GTNNAC | 7 cut(s) | 361, 452, 713, 736, 836, 1327, 1620 |
| Hpy188I | TCNGA | 3 cut(s) | 136, 772, 898 |
| Hpy188III | TCNNGA | 6 cut(s) | 184, 1005, 1054, 1076, 1214, 1439 |
| Hpy8I | GTNNAC | 7 cut(s) | 361, 452, 713, 736, 836, 1327, 1620 |
| HpyAV | CCTTC | 5 cut(s) | 1051, 1082, 1222, 1508, 1582 |
| HpyCH4III | ACNGT | 6 cut(s) | 160, 424, 669, 687, 1130, 1205 |
| HpyCH4IV | ACGT | 2 cut(s) | 751, 1407 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 409, 1426 |
| HpyF3I | CTNAG | 4 cut(s) | 470, 897, 1308, 1671 |
| HpySE526I | ACGT | 2 cut(s) | 751, 1407 |
| Hsp92I | GRCGYC | 1 cut(s) | 1407 |
| Hsp92II | CATG | 7 cut(s) | 77, 150, 337, 412, 481, 968, 1345 |
| HspAI | GCGC | 1 cut(s) | 1668 |
| Kzo9I | GATC | 7 cut(s) | 305, 350, 391, 559, 1060, 1608, 1633 |
| LmnI | GCTCC | 4 cut(s) | 13, 493, 667, 1007 |
| Lsp1109I | GCAGC | 2 cut(s) | 1232, 1651 |
| LweI | GCATC | 9 cut(s) | 152, 184, 190, 196, 309, 357, 1161, 1207, 1584 |
| MaeI | CTAG | 5 cut(s) | 633, 648, 779, 972, 1173 |
| MaeII | ACGT | 2 cut(s) | 751, 1407 |
| MaeIII | GTNAC | 4 cut(s) | 223, 650, 1422, 1462 |
| MalI | GATC | 7 cut(s) | 307, 352, 393, 561, 1062, 1610, 1635 |
| MboI | GATC | 7 cut(s) | 305, 350, 391, 559, 1060, 1608, 1633 |
| MboII | GAAGA | 7 cut(s) | 62, 65, 85, 509, 512, 633, 1615 |
| MflI | RGATCY | 3 cut(s) | 305, 350, 559 |
| MhlI | GDGCHC | 4 cut(s) | 112, 664, 715, 757 |
| MluCI | AATT | 6 cut(s) | 14, 39, 89, 853, 1434, 1493 |
| MmeI | TCCRAC | 4 cut(s) | 260, 553, 669, 1109 |
| Mph1103I | ATGCAT | 1 cut(s) | 152 |
| MseI | TTAA | 8 cut(s) | 42, 672, 866, 951, 1278, 1332, 1527, 1658 |
| MslI | CAYNNNNRTG | 1 cut(s) | 657 |
| MspI | CCGG | 1 cut(s) | 309 |
| MspR9I | CCNGG | 5 cut(s) | 267, 310, 372, 384, 501 |
| MvaI | CCWGG | 4 cut(s) | 267, 372, 384, 501 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 409, 1426 |
| NciI | CCSGG | 1 cut(s) | 310 |
| NcoI | CCATGG | 1 cut(s) | 964 |
| NdeII | GATC | 7 cut(s) | 305, 350, 391, 559, 1060, 1608, 1633 |
| NlaIII | CATG | 7 cut(s) | 77, 150, 337, 412, 481, 968, 1345 |
| NlaIV | GGNNCC | 4 cut(s) | 110, 307, 561, 810 |
| NmuCI | GTSAC | 3 cut(s) | 223, 650, 1462 |
| NsiI | ATGCAT | 1 cut(s) | 152 |
| NspI | RCATGY | 2 cut(s) | 77, 412 |
| OliI | CACNNNNGTG | 1 cut(s) | 657 |
| PciI | ACATGT | 1 cut(s) | 73 |
| PfeI | GAWTC | 1 cut(s) | 218 |
| PfoI | TCCNGGA | 1 cut(s) | 308 |
| PkrI | GCNGC | 4 cut(s) | 7, 1247, 1583, 1641 |
| Ppu21I | YACGTR | 1 cut(s) | 752 |
| PscI | ACATGT | 1 cut(s) | 73 |
| Psp6I | CCWGG | 4 cut(s) | 265, 370, 382, 499 |
| PspGI | CCWGG | 4 cut(s) | 265, 370, 382, 499 |
| PspN4I | GGNNCC | 4 cut(s) | 110, 307, 561, 810 |
| PspOMI | GGGCCC | 1 cut(s) | 108 |
| PspPI | GGNCC | 3 cut(s) | 108, 109, 968 |
| PstI | CTGCAG | 1 cut(s) | 1641 |
| PsuI | RGATCY | 3 cut(s) | 305, 350, 559 |
| RsaI | GTAC | 4 cut(s) | 482, 750, 1160, 1177 |
| RsaNI | GTAC | 4 cut(s) | 481, 749, 1159, 1176 |
| RseI | CAYNNNNRTG | 1 cut(s) | 657 |
| SaqAI | TTAA | 8 cut(s) | 42, 672, 866, 951, 1278, 1332, 1527, 1658 |
| SatI | GCNGC | 4 cut(s) | 6, 1246, 1582, 1640 |
| Sau3AI | GATC | 7 cut(s) | 305, 350, 391, 559, 1060, 1608, 1633 |
| Sau96I | GGNCC | 3 cut(s) | 108, 109, 968 |
| ScaI | AGTACT | 1 cut(s) | 1177 |
| ScrFI | CCNGG | 5 cut(s) | 267, 310, 372, 384, 501 |
| SduI | GDGCHC | 4 cut(s) | 112, 664, 715, 757 |
| SfaNI | GCATC | 9 cut(s) | 152, 184, 190, 196, 309, 357, 1161, 1207, 1584 |
| SfcI | CTRYAG | 2 cut(s) | 420, 1637 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 657 |
| SmlI | CTYRAG | 1 cut(s) | 1439 |
| SmoI | CTYRAG | 1 cut(s) | 1439 |
| Sse9I | AATT | 6 cut(s) | 14, 39, 89, 853, 1434, 1493 |
| SsiI | CCGC | 3 cut(s) | 303, 1418, 1582 |
| SspMI | CTAG | 5 cut(s) | 633, 648, 779, 972, 1173 |
| StyD4I | CCNGG | 5 cut(s) | 265, 308, 370, 382, 499 |
| StyI | CCWWGG | 4 cut(s) | 117, 286, 823, 964 |
| TaaI | ACNGT | 6 cut(s) | 160, 424, 669, 687, 1130, 1205 |
| TaiI | ACGT | 2 cut(s) | 754, 1410 |
| TasI | AATT | 6 cut(s) | 14, 39, 89, 853, 1434, 1493 |
| TatI | WGTACW | 2 cut(s) | 1158, 1175 |
| TauI | GCSGC | 1 cut(s) | 1584 |
| TfiI | GAWTC | 1 cut(s) | 218 |
| Tru1I | TTAA | 8 cut(s) | 42, 672, 866, 951, 1278, 1332, 1527, 1658 |
| Tru9I | TTAA | 8 cut(s) | 42, 672, 866, 951, 1278, 1332, 1527, 1658 |
| TscAI | CASTG | 7 cut(s) | 91, 184, 247, 672, 738, 1135, 1210 |
| TseFI | GTSAC | 3 cut(s) | 223, 650, 1462 |
| TseI | GCWGC | 3 cut(s) | 5, 1245, 1639 |
| Tsp45I | GTSAC | 3 cut(s) | 223, 650, 1462 |
| TspDTI | ATGAA | 3 cut(s) | 231, 969, 1133 |
| TspGWI | ACGGA | 1 cut(s) | 211 |
| TspRI | CASTG | 7 cut(s) | 91, 184, 247, 672, 738, 1135, 1210 |
| VneI | GTGCAC | 1 cut(s) | 711 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 116 |
| XapI | RAATTY | 2 cut(s) | 89, 1493 |
| XceI | RCATGY | 2 cut(s) | 77, 412 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 830 |
| XmiI | GTMKAC | 2 cut(s) | 360, 1619 |
| XspI | CTAG | 5 cut(s) | 633, 648, 779, 972, 1173 |
| ZraI | GACGTC | 1 cut(s) | 1408 |
| ZrmI | AGTACT | 1 cut(s) | 1177 |
| Zsp2I | ATGCAT | 1 cut(s) | 152 |