Prupe.4G124900_v2.0.a1

YTH domain-containing family protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
6819589 .. 6824476
4888 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G124900.1

Sequence Viewer

Length: 1677 bp
ATGGCTGCTCCTCAATTTCAACACCCTCATCACAACTCAATTAAACAAGAAGAAGAAAAAGAAACAAACCTACATGTTCAATCCACTGAATTCTTCCATTCCAATCGGGCCCTCTCCAAGGATGGAAGCCCATCTGATACAGCATCATGCATATCAACTGTGGGAGATACAACTGCCAGTGTCAAGAAAGGTGATGCAGATGCAGATGCAGATTATGAATCCGTGACTTCTTATCCAACCACTGCGTATTACGGCTACACCTATCCAGGTTATGATATGGAAAACCAAGGATACTATGTTGGCGGATCCGGGATGGAGATGCAATACCCTGTCATGCAAGCAGATAATGGATCTTTTGTCTACTTGATGCCAGGATTTCAGCCTGGCTACGATCCTTACACGCCATACATGCCCATAACTACAGTCGGTAGTGATGGACAATATGTTAGTCAACAGATGTATCCCCCACTCAGCCCCATGTACCAAGCTCCTATTTCCCCTGGATATAACCCCTCTCTTCTTCCTTATGGGGAGTTAGTCCCATCACCTTATTTGTGGGATCCATCTCTTGTTGGAGATGGAACATTTGGAAATGCTTACAATGGAGTTTTAGAAACACCACCCTCTAAACCTAGTTTCTCTTCCCCTAGTCACAATCGTGCTCCACTGTTTAAATCTCCTAAACCGTTGGATGTTCAATCAGGTTTTGGTGCACGAAATCAGCCAAAACCAGTGAACAAGGCTTCAGTACGTGCCCCAAGTATCCAATCAGAAGCACTAGCCAAAGGATACTTTTCTGTGGCAAAGGTTCCTGTCTATAACCAAGGGACTGGTGGACTGCTCTATCCAAACAATTCACCAACTTTAAAAGCAAATGCAAAGGGTTGGGGTGGCTCTGAGAAGTTGAAACCAAGAAGTAAGGCTAATGGTGTTAGAGATATTAGTTTGTTTAATGAAAAGAACCATGGCCCTAGAACAACCAACCCTAAAGGTGCATTGTTGTCTGGAGCAGAAAAGGAGAATGGAAAGTGCGACAGCATAGCCTCTGCCATCAGGAAGGATCAATATAACCTTCCTGACTTTCCAACCAAATATGAGCAAGCACTTTTCTTTGTTATCAAGTCTTACAGTGAGGATGATATTCATAAGAGCATCAAGTACAATGTGTGGGCTAGTACTCCTAATGGGAATAAGAGGCTGGACAGTGCTTATCAAGATGCAGAGGAGAAGGTTGCACAGAAAAGCTGCAAGTGTCCCGTGTTCCTTTTCTTTTCGGTTAATGCAAGTGGTCAGTTTTGTGGAGTAGCTGAGATGATTGGCCGTGTGGACTTTAATAAGAGCATGGATTTCTGGCAACAGGATAAATGGAATGGTTATTTCCCAGTCAAGTGGCATATCATAAAAGACGTCCCAAACCCGCAGTTACGGCATATAATTCTTGAGAATAATGAGAACAAGCCTGTGACCAATAGCAGAGACACGCAAGAGGTGAAATTCCTTCAGGGTATTGAAATGCTGAACATATTTAAAAATCATCTGTCAAAGACATCAATACTGGACGACTTTGATTTCTACGAAAGCCGCCAGAAGGTGATGCAGGAGAAGAGGATCAGGCAGTCTACACCTTACTATGATCTGCAGCAAAAAATAGGAGAGTTAAGTATCAGCGCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

559

Amino Acids

62.2

Weight (kDa)

6.44

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1410
AccI GTMKAC 2 cut(s) 360, 1619
AciI CCGC 3 cut(s) 303, 1418, 1582
AclWI GGATC 8 cut(s) 300, 313, 358, 386, 554, 567, 1068, 1616
AcoI YGGCCR 1 cut(s) 1318
AcsI RAATTY 2 cut(s) 89, 1493
AcuI CTGAAG 2 cut(s) 729, 1484
AcyI GRCGYC 1 cut(s) 1407
AfaI GTAC 4 cut(s) 482, 750, 1160, 1177
AfeI AGCGCT 1 cut(s) 1669
AfiI CCNNNNNNNGG 2 cut(s) 118, 1588
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 5 cut(s) 20, 80, 698, 907, 1511
AjnI CCWGG 4 cut(s) 265, 370, 382, 499
AleI CACNNNNGTG 1 cut(s) 657
AluBI AGCT 3 cut(s) 488, 1245, 1307
AluI AGCT 3 cut(s) 488, 1245, 1307
Alw21I GWGCWC 2 cut(s) 664, 715
Alw26I GTCTC 1 cut(s) 1470
Alw44I GTGCAC 1 cut(s) 711
AlwI GGATC 8 cut(s) 300, 313, 358, 386, 554, 567, 1068, 1616
Aor51HI AGCGCT 1 cut(s) 1669
AoxI GGCC 3 cut(s) 108, 967, 1318
ApaI GGGCCC 1 cut(s) 112
ApaLI GTGCAC 1 cut(s) 711
ApeKI GCWGC 3 cut(s) 5, 1245, 1639
ApoI RAATTY 2 cut(s) 89, 1493
AspLEI GCGC 1 cut(s) 1670
AspS9I GGNCC 3 cut(s) 108, 109, 968
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 5 cut(s) 203, 537, 849, 1501, 1603
BaeGI GKGCMC 3 cut(s) 112, 715, 757
BaeI ACNNNNGTAYC 2 cut(s) 443, 476
BamHI GGATCC 2 cut(s) 305, 559
BanII GRGCYC 1 cut(s) 112
Bbv12I GWGCWC 2 cut(s) 664, 715
BbvI GCAGC 2 cut(s) 1232, 1651
BccI CCATC 8 cut(s) 116, 139, 307, 428, 550, 571, 572, 1058
BceAI ACGGC 3 cut(s) 268, 1305, 1442
BciT130I CCWGG 4 cut(s) 267, 372, 384, 501
BciVI GTATCC 4 cut(s) 284, 471, 773, 782
BcnI CCSGG 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 1470
BfaI CTAG 5 cut(s) 633, 648, 779, 972, 1173
BfmI CTRYAG 2 cut(s) 420, 1637
BfoI RGCGCY 1 cut(s) 1671
BfuI GTATCC 4 cut(s) 284, 471, 773, 782
BisI GCNGC 4 cut(s) 6, 1246, 1582, 1640
BlsI GCNGC 4 cut(s) 7, 1247, 1583, 1641
BmcAI AGTACT 1 cut(s) 1177
Bme1390I CCNGG 5 cut(s) 267, 310, 372, 384, 501
BmgT120I GGNCC 3 cut(s) 108, 109, 968
BmiI GGNNCC 4 cut(s) 110, 307, 561, 810
BmrFI CCNGG 5 cut(s) 267, 310, 372, 384, 501
BmrI ACTGGG 1 cut(s) 1376
BmsI GCATC 9 cut(s) 152, 184, 190, 196, 309, 357, 1161, 1207, 1584
BmuI ACTGGG 1 cut(s) 1376
BpmI CTGGAG 1 cut(s) 1026
BpuEI CTTGAG 1 cut(s) 1460
BpuMI CCSGG 1 cut(s) 310
BsaAI YACGTR 1 cut(s) 752
BsaHI GRCGYC 1 cut(s) 1407
BsaJI CCNNGG 5 cut(s) 117, 286, 499, 823, 964
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 1588
Bse1I ACTGG 5 cut(s) 177, 731, 835, 1382, 1560
BseBI CCWGG 4 cut(s) 267, 372, 384, 501
BseDI CCNNGG 5 cut(s) 117, 286, 499, 823, 964
BseGI GGATG 4 cut(s) 127, 318, 697, 1141
BseLI CCNNNNNNNGG 2 cut(s) 118, 1588
BseMII CTCAG 4 cut(s) 484, 888, 1299, 1662
BseNI ACTGG 5 cut(s) 177, 731, 835, 1382, 1560
BseRI GAGGAG 1 cut(s) 1238
BseSI GKGCMC 3 cut(s) 112, 715, 757
BseXI GCAGC 2 cut(s) 1232, 1651
BshFI GGCC 3 cut(s) 110, 969, 1320
BsiHKAI GWGCWC 2 cut(s) 664, 715
BsiSI CCGG 1 cut(s) 309
BslFI GGGAC 4 cut(s) 524, 841, 1239, 1394
BslI CCNNNNNNNGG 2 cut(s) 118, 1588
BsmAI GTCTC 1 cut(s) 1470
BsmFI GGGAC 4 cut(s) 524, 841, 1239, 1394
BsnI GGCC 3 cut(s) 110, 969, 1320
Bsp120I GGGCCC 1 cut(s) 108
Bsp1286I GDGCHC 4 cut(s) 112, 664, 715, 757
Bsp143I GATC 7 cut(s) 305, 350, 391, 559, 1060, 1608, 1633
Bsp19I CCATGG 1 cut(s) 964
BspACI CCGC 3 cut(s) 303, 1418, 1582
BspANI GGCC 3 cut(s) 110, 969, 1320
BspCNI CTCAG 4 cut(s) 483, 889, 1300, 1663
BspLI GGNNCC 4 cut(s) 110, 307, 561, 810
BspMAI CTGCAG 1 cut(s) 1641
BspPI GGATC 8 cut(s) 300, 313, 358, 386, 554, 567, 1068, 1616
BsrI ACTGG 5 cut(s) 177, 731, 835, 1382, 1560
BssECI CCNNGG 5 cut(s) 117, 286, 499, 823, 964
BssMI GATC 7 cut(s) 305, 350, 391, 559, 1060, 1608, 1633
BssNI GRCGYC 1 cut(s) 1407
BssT1I CCWWGG 4 cut(s) 117, 286, 823, 964
Bst2UI CCWGG 4 cut(s) 267, 372, 384, 501
Bst4CI ACNGT 6 cut(s) 160, 424, 669, 687, 1130, 1205
Bst6I CTCTTC 3 cut(s) 522, 646, 1598
BstACI GRCGYC 1 cut(s) 1407
BstBAI YACGTR 1 cut(s) 752
BstC8I GCNNGC 2 cut(s) 339, 1101
BstDEI CTNAG 4 cut(s) 470, 897, 1308, 1671
BstDSI CCRYGG 1 cut(s) 964
BstENI CCTNNNNNAGG 1 cut(s) 116
BstF5I GGATG 4 cut(s) 127, 318, 697, 1141
BstH2I RGCGCY 1 cut(s) 1671
BstHHI GCGC 1 cut(s) 1670
BstKTI GATC 7 cut(s) 308, 353, 394, 562, 1063, 1611, 1636
BstMAI GTCTC 1 cut(s) 1470
BstMBI GATC 7 cut(s) 305, 350, 391, 559, 1060, 1608, 1633
BstMWI GCNNNNNNNGC 2 cut(s) 409, 1426
BstNI CCWGG 4 cut(s) 267, 372, 384, 501
BstNSI RCATGY 2 cut(s) 77, 412
BstSCI CCNGG 5 cut(s) 265, 308, 370, 382, 499
BstSFI CTRYAG 2 cut(s) 420, 1637
BstSLI GKGCMC 3 cut(s) 112, 715, 757
BstV1I GCAGC 2 cut(s) 1232, 1651
BstX2I RGATCY 3 cut(s) 305, 350, 559
BstXI CCANNNNNNTGG 2 cut(s) 830, 1389
BstYI RGATCY 3 cut(s) 305, 350, 559
BsuI GTATCC 4 cut(s) 284, 471, 773, 782
BsuRI GGCC 3 cut(s) 110, 969, 1320
BtgI CCRYGG 1 cut(s) 964
BtsCI GGATG 4 cut(s) 127, 318, 697, 1141
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 7 cut(s) 84, 184, 240, 665, 738, 1135, 1210
Cac8I GCNNGC 2 cut(s) 339, 1101
CfoI GCGC 1 cut(s) 1670
Cfr13I GGNCC 3 cut(s) 108, 109, 968
Csp6I GTAC 4 cut(s) 481, 749, 1159, 1176
CviAII CATG 7 cut(s) 74, 147, 334, 409, 478, 965, 1342
CviQI GTAC 4 cut(s) 481, 749, 1159, 1176
DdeI CTNAG 4 cut(s) 470, 897, 1308, 1671
DpnI GATC 7 cut(s) 307, 352, 393, 561, 1062, 1610, 1635
DpnII GATC 7 cut(s) 305, 350, 391, 559, 1060, 1608, 1633
DraI TTTAAA 3 cut(s) 673, 867, 1528
EaeI YGGCCR 1 cut(s) 1318
Eam1104I CTCTTC 3 cut(s) 522, 646, 1598
EarI CTCTTC 3 cut(s) 522, 646, 1598
EciI GGCGGA 1 cut(s) 318
Eco130I CCWWGG 4 cut(s) 117, 286, 823, 964
Eco24I GRGCYC 1 cut(s) 112
Eco47III AGCGCT 1 cut(s) 1669
Eco57I CTGAAG 2 cut(s) 729, 1484
EcoNI CCTNNNNNAGG 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 89
EcoRII CCWGG 4 cut(s) 265, 370, 382, 499
EcoT14I CCWWGG 4 cut(s) 117, 286, 823, 964
EcoT22I ATGCAT 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 112
ErhI CCWWGG 4 cut(s) 117, 286, 823, 964
FaeI CATG 7 cut(s) 77, 150, 337, 412, 481, 968, 1345
FaqI GGGAC 4 cut(s) 524, 841, 1239, 1394
FatI CATG 7 cut(s) 73, 146, 333, 408, 477, 964, 1341
FauI CCCGC 1 cut(s) 1425
FblI GTMKAC 2 cut(s) 360, 1619
Fnu4HI GCNGC 4 cut(s) 6, 1246, 1582, 1640
FokI GGATG 4 cut(s) 134, 325, 704, 1148
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 4 cut(s) 6, 1246, 1582, 1640
FspBI CTAG 5 cut(s) 633, 648, 779, 972, 1173
GlaI GCGC 1 cut(s) 1669
GluI GCNGC 4 cut(s) 6, 1246, 1582, 1640
GsuI CTGGAG 1 cut(s) 1026
HaeII RGCGCY 1 cut(s) 1671
HaeIII GGCC 3 cut(s) 110, 969, 1320
HapII CCGG 1 cut(s) 309
HhaI GCGC 1 cut(s) 1670
Hin1I GRCGYC 1 cut(s) 1407
Hin1II CATG 7 cut(s) 77, 150, 337, 412, 481, 968, 1345
Hin6I GCGC 1 cut(s) 1668
HinP1I GCGC 1 cut(s) 1668
HincII GTYRAC 1 cut(s) 452
HindII GTYRAC 1 cut(s) 452
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 309
HphI GGTGA 5 cut(s) 203, 537, 849, 1501, 1603
Hpy166II GTNNAC 7 cut(s) 361, 452, 713, 736, 836, 1327, 1620
Hpy188I TCNGA 3 cut(s) 136, 772, 898
Hpy188III TCNNGA 6 cut(s) 184, 1005, 1054, 1076, 1214, 1439
Hpy8I GTNNAC 7 cut(s) 361, 452, 713, 736, 836, 1327, 1620
HpyAV CCTTC 5 cut(s) 1051, 1082, 1222, 1508, 1582
HpyCH4III ACNGT 6 cut(s) 160, 424, 669, 687, 1130, 1205
HpyCH4IV ACGT 2 cut(s) 751, 1407
HpyF10VI GCNNNNNNNGC 2 cut(s) 409, 1426
HpyF3I CTNAG 4 cut(s) 470, 897, 1308, 1671
HpySE526I ACGT 2 cut(s) 751, 1407
Hsp92I GRCGYC 1 cut(s) 1407
Hsp92II CATG 7 cut(s) 77, 150, 337, 412, 481, 968, 1345
HspAI GCGC 1 cut(s) 1668
Kzo9I GATC 7 cut(s) 305, 350, 391, 559, 1060, 1608, 1633
LmnI GCTCC 4 cut(s) 13, 493, 667, 1007
Lsp1109I GCAGC 2 cut(s) 1232, 1651
LweI GCATC 9 cut(s) 152, 184, 190, 196, 309, 357, 1161, 1207, 1584
MaeI CTAG 5 cut(s) 633, 648, 779, 972, 1173
MaeII ACGT 2 cut(s) 751, 1407
MaeIII GTNAC 4 cut(s) 223, 650, 1422, 1462
MalI GATC 7 cut(s) 307, 352, 393, 561, 1062, 1610, 1635
MboI GATC 7 cut(s) 305, 350, 391, 559, 1060, 1608, 1633
MboII GAAGA 7 cut(s) 62, 65, 85, 509, 512, 633, 1615
MflI RGATCY 3 cut(s) 305, 350, 559
MhlI GDGCHC 4 cut(s) 112, 664, 715, 757
MluCI AATT 6 cut(s) 14, 39, 89, 853, 1434, 1493
MmeI TCCRAC 4 cut(s) 260, 553, 669, 1109
Mph1103I ATGCAT 1 cut(s) 152
MseI TTAA 8 cut(s) 42, 672, 866, 951, 1278, 1332, 1527, 1658
MslI CAYNNNNRTG 1 cut(s) 657
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 5 cut(s) 267, 310, 372, 384, 501
MvaI CCWGG 4 cut(s) 267, 372, 384, 501
MwoI GCNNNNNNNGC 2 cut(s) 409, 1426
NciI CCSGG 1 cut(s) 310
NcoI CCATGG 1 cut(s) 964
NdeII GATC 7 cut(s) 305, 350, 391, 559, 1060, 1608, 1633
NlaIII CATG 7 cut(s) 77, 150, 337, 412, 481, 968, 1345
NlaIV GGNNCC 4 cut(s) 110, 307, 561, 810
NmuCI GTSAC 3 cut(s) 223, 650, 1462
NsiI ATGCAT 1 cut(s) 152
NspI RCATGY 2 cut(s) 77, 412
OliI CACNNNNGTG 1 cut(s) 657
PciI ACATGT 1 cut(s) 73
PfeI GAWTC 1 cut(s) 218
PfoI TCCNGGA 1 cut(s) 308
PkrI GCNGC 4 cut(s) 7, 1247, 1583, 1641
Ppu21I YACGTR 1 cut(s) 752
PscI ACATGT 1 cut(s) 73
Psp6I CCWGG 4 cut(s) 265, 370, 382, 499
PspGI CCWGG 4 cut(s) 265, 370, 382, 499
PspN4I GGNNCC 4 cut(s) 110, 307, 561, 810
PspOMI GGGCCC 1 cut(s) 108
PspPI GGNCC 3 cut(s) 108, 109, 968
PstI CTGCAG 1 cut(s) 1641
PsuI RGATCY 3 cut(s) 305, 350, 559
RsaI GTAC 4 cut(s) 482, 750, 1160, 1177
RsaNI GTAC 4 cut(s) 481, 749, 1159, 1176
RseI CAYNNNNRTG 1 cut(s) 657
SaqAI TTAA 8 cut(s) 42, 672, 866, 951, 1278, 1332, 1527, 1658
SatI GCNGC 4 cut(s) 6, 1246, 1582, 1640
Sau3AI GATC 7 cut(s) 305, 350, 391, 559, 1060, 1608, 1633
Sau96I GGNCC 3 cut(s) 108, 109, 968
ScaI AGTACT 1 cut(s) 1177
ScrFI CCNGG 5 cut(s) 267, 310, 372, 384, 501
SduI GDGCHC 4 cut(s) 112, 664, 715, 757
SfaNI GCATC 9 cut(s) 152, 184, 190, 196, 309, 357, 1161, 1207, 1584
SfcI CTRYAG 2 cut(s) 420, 1637
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 1 cut(s) 1439
SmoI CTYRAG 1 cut(s) 1439
Sse9I AATT 6 cut(s) 14, 39, 89, 853, 1434, 1493
SsiI CCGC 3 cut(s) 303, 1418, 1582
SspMI CTAG 5 cut(s) 633, 648, 779, 972, 1173
StyD4I CCNGG 5 cut(s) 265, 308, 370, 382, 499
StyI CCWWGG 4 cut(s) 117, 286, 823, 964
TaaI ACNGT 6 cut(s) 160, 424, 669, 687, 1130, 1205
TaiI ACGT 2 cut(s) 754, 1410
TasI AATT 6 cut(s) 14, 39, 89, 853, 1434, 1493
TatI WGTACW 2 cut(s) 1158, 1175
TauI GCSGC 1 cut(s) 1584
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 8 cut(s) 42, 672, 866, 951, 1278, 1332, 1527, 1658
Tru9I TTAA 8 cut(s) 42, 672, 866, 951, 1278, 1332, 1527, 1658
TscAI CASTG 7 cut(s) 91, 184, 247, 672, 738, 1135, 1210
TseFI GTSAC 3 cut(s) 223, 650, 1462
TseI GCWGC 3 cut(s) 5, 1245, 1639
Tsp45I GTSAC 3 cut(s) 223, 650, 1462
TspDTI ATGAA 3 cut(s) 231, 969, 1133
TspGWI ACGGA 1 cut(s) 211
TspRI CASTG 7 cut(s) 91, 184, 247, 672, 738, 1135, 1210
VneI GTGCAC 1 cut(s) 711
XagI CCTNNNNNAGG 1 cut(s) 116
XapI RAATTY 2 cut(s) 89, 1493
XceI RCATGY 2 cut(s) 77, 412
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XmiI GTMKAC 2 cut(s) 360, 1619
XspI CTAG 5 cut(s) 633, 648, 779, 972, 1173
ZraI GACGTC 1 cut(s) 1408
ZrmI AGTACT 1 cut(s) 1177
Zsp2I ATGCAT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.