MD10G1219100.v1.1

YTH domain-containing family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0006572
Physical Location & Seq
Reverse (-)
31668985 .. 31673168
4184 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1219100.v1.1.491

Sequence Viewer

Length: 1683 bp
ATGGCTGCCGCTGCTGCACCTCAATTTCATCACAACTCTCTTAGAAAAGAGGAGGAAGAAGAGAAAGATTCAAACCCGCATGTCCAATCCACAGAATTCTTCAATTCCAATCTGGCTCACAGCAAGGATGGGAGCCCATCTGATACAGCATCATGTATATCGACCGTGGGAGATACAAACGCCAGTGTAAAAAAAAGTGATGCAGATGCAGATGCAGATTATGAATCCCTGACTTCTTATCCGCCAACTGCATATTACGGATACACCTATCCAGGTTATGAAATGGAAAACAATGGATACTATGTTGGTGGAACAGGGATGGAGATGCAATATCCAGTCATGCAAGCAGATAATGGATCTTTTGTCTACTTGATGCCAGGATTTCAGCCTGGTTATGATCCCTACTCGCCATACATGCCCATTTCTCCAATCGGTAGTGATGGGCAATATGTTGGTCAACAGATGTATCCCTCCCTGAGTCCCGTGTACCAAGCTCCTATTTCCCCCGGATATAACCCTTCTCTTCTTCCTTATGGGGAGTTCGTCCAATCACCCTACTTGTGGGATCCATCTCCTGTTGTTGGAGATGGAACAGTCGGAAGTCCCCACAAAGCAGTCTTAGAAACACCGCCCTATAAACCTAATTTCTCTTCCCCTAGTCACACTCGTGCTCCACTCTCTAAATCTCCCAAGCCGTTGGATGTTTCATCAGGTTATGGTGCGCGAAATCAGTCAAAACCAGCAAACAAGGCCTCGCTGCGTCCCCCAAGTCTTCAAACAGAGGCACTAGCGAAAGGTTACTTTCCGGTATCAAAGGTTCCGGTCTATAACCAAGGGACAGGCGGACTGCTCTATCCAAACAATTCTCCGACTTTAAAACCAAATGCAAGGGGCTGGGGTGGCTCTGACAAGTTGAAACCAAGAAGTAAGGCTAATGGCGTTAAGGATATTAATCTATTTAATGAGAAGAACCATGGCCCCAGAACAACCAATCCTAAAGGTGCATTGGTGCCCGGAGCTGACAAGGAGAATGAAAATTCTGATGGCATAGCCTCTGTCATCAGGAAGGATCAATATAACCTCCCGGACTTTCCAACCAAATACAAGCAAGCACTTTTCTTTGTCATCAAATCTTACAGTGAAGATGATATTCATAAAAGCATCAAATACAATGTGTGGGCTAGTACTCCCAATGGAAATAAGAGGTTGGATAGTGCATATCAAGATGCACAAGAGAAGGTGGCACAGAAGGGCTACAAGTGTCCCGTCTTCCTCTTCTTTTCGGTTAATGCTAGTGGTCAGTTTTGTGGAGTAGCTGAGATGATTGGTCGTGTCGACTTCAATAAGAACATGGATTTCTGGCAGCAGGATAAGTGGAATGGTTATTTTCCGGTCAAGTGGCATATCATAAAAGACATCCCAAACCCACAGTTACGACATATAATACTTGAGAACAACGAGAACAAGCCCGTGACCAATAGTAGAGACACTCAAGAGGTGAAACTTCTTCAGGGTATCGAAATGCTGAACATTTTTAAAAATTATATGTCAAAGACATCAATACTGGATGACTTTGATTTCTACGAAACCCGCCAGAAAATGATGCAGGAGAAGAGGATCACACAATCTACACCCTACTACGAACTGCAGAAAATGAGTGAGTTAAGTGTCAGTGCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

561

Amino Acids

62.42

Weight (kDa)

6.25

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 373 - 513 7.6e-48 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1009
AccI GTMKAC 2 cut(s) 366, 1335
AccII CGCG 1 cut(s) 724
AciI CCGC 6 cut(s) 9, 77, 242, 629, 843, 1591
AclWI GGATC 6 cut(s) 364, 392, 560, 573, 1077, 1625
AcsI RAATTY 2 cut(s) 95, 1036
AcuI CTGAAG 1 cut(s) 1493
AfaI GTAC 2 cut(s) 488, 1186
AfiI CCNNNNNNNGG 2 cut(s) 561, 581
AgsI TTSAA 5 cut(s) 72, 103, 776, 916, 1342
AjnI CCWGG 3 cut(s) 271, 376, 388
AleI CACNNNNGTG 1 cut(s) 666
AloI GAACNNNNNNTCC 2 cut(s) 976, 1008
AluBI AGCT 3 cut(s) 494, 1019, 1316
AluI AGCT 3 cut(s) 494, 1019, 1316
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 1 cut(s) 1479
AlwI GGATC 6 cut(s) 364, 392, 560, 573, 1077, 1625
AoxI GGCC 2 cut(s) 750, 976
ApeKI GCWGC 5 cut(s) 5, 11, 14, 757, 1363
ApoI RAATTY 2 cut(s) 95, 1036
AseI ATTAAT 1 cut(s) 951
AspLEI GCGC 1 cut(s) 724
AspS9I GGNCC 1 cut(s) 977
AsuC2I CCSGG 3 cut(s) 507, 1014, 1085
AsuHPI GGTGA 2 cut(s) 543, 1510
BaeGI GKGCMC 1 cut(s) 1014
BaeI ACNNNNGTAYC 2 cut(s) 449, 482
BamHI GGATCC 1 cut(s) 565
BanI GGYRCC 1 cut(s) 1009
BanII GRGCYC 1 cut(s) 137
BauI CACGAG 1 cut(s) 666
BbsI GAAGAC 2 cut(s) 764, 1261
Bbv12I GWGCWC 1 cut(s) 673
BbvI GCAGC 2 cut(s) 744, 1375
BccI CCATC 7 cut(s) 122, 145, 313, 434, 577, 581, 1037
BceAI ACGGC 1 cut(s) 679
BciT130I CCWGG 3 cut(s) 273, 378, 390
BciVI GTATCC 3 cut(s) 254, 290, 477
BcnI CCSGG 3 cut(s) 507, 1014, 1085
BcoDI GTCTC 1 cut(s) 1479
BfaI CTAG 4 cut(s) 657, 788, 1182, 1293
BfmI CTRYAG 1 cut(s) 1646
BfuI GTATCC 3 cut(s) 254, 290, 477
BisI GCNGC 6 cut(s) 6, 9, 12, 15, 758, 1364
BlsI GCNGC 6 cut(s) 7, 10, 13, 16, 759, 1365
BmcAI AGTACT 1 cut(s) 1186
Bme1390I CCNGG 6 cut(s) 273, 378, 390, 507, 1014, 1085
BmgT120I GGNCC 1 cut(s) 977
BmiI GGNNCC 5 cut(s) 134, 567, 819, 979, 1011
BmrFI CCNGG 6 cut(s) 273, 378, 390, 507, 1014, 1085
BmsI GCATC 9 cut(s) 158, 190, 196, 202, 315, 363, 1170, 1216, 1593
BpiI GAAGAC 2 cut(s) 764, 1261
BpuEI CTTGAG 2 cut(s) 1469, 1476
BpuMI CCSGG 3 cut(s) 507, 1014, 1085
BsaBI GATNNNNATC 1 cut(s) 951
BsaJI CCNNGG 4 cut(s) 165, 505, 832, 973
BsaWI WCCGGW 3 cut(s) 805, 820, 1390
BsaXI ACNNNNNCTCC 2 cut(s) 655, 685
Bsc4I CCNNNNNNNGG 2 cut(s) 561, 581
Bse1I ACTGG 3 cut(s) 183, 335, 1569
Bse8I GATNNNNATC 1 cut(s) 951
BseBI CCWGG 3 cut(s) 273, 378, 390
BseDI CCNNGG 4 cut(s) 165, 505, 832, 973
BseGI GGATG 5 cut(s) 133, 324, 706, 1416, 1573
BseJI GATNNNNATC 1 cut(s) 951
BseLI CCNNNNNNNGG 2 cut(s) 561, 581
BseMII CTCAG 3 cut(s) 467, 1308, 1668
BseNI ACTGG 3 cut(s) 183, 335, 1569
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 1014
BseXI GCAGC 2 cut(s) 744, 1375
BseYI CCCAGC 1 cut(s) 894
Bsh1236I CGCG 1 cut(s) 724
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 2 cut(s) 752, 978
BshNI GGYRCC 1 cut(s) 1009
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 673
BsiSI CCGG 6 cut(s) 507, 806, 821, 1014, 1085, 1391
BslFI GGGAC 5 cut(s) 465, 588, 747, 850, 1248
BslI CCNNNNNNNGG 2 cut(s) 561, 581
BsmAI GTCTC 1 cut(s) 1479
BsmFI GGGAC 5 cut(s) 465, 588, 747, 850, 1248
BsnI GGCC 2 cut(s) 752, 978
Bsp1286I GDGCHC 3 cut(s) 137, 673, 1014
Bsp143I GATC 5 cut(s) 356, 397, 565, 1069, 1617
Bsp19I CCATGG 1 cut(s) 973
BspACI CCGC 6 cut(s) 9, 77, 242, 629, 843, 1591
BspANI GGCC 2 cut(s) 752, 978
BspCNI CTCAG 3 cut(s) 468, 1309, 1669
BspFNI CGCG 1 cut(s) 724
BspLI GGNNCC 5 cut(s) 134, 567, 819, 979, 1011
BspMAI CTGCAG 1 cut(s) 1650
BspPI GGATC 6 cut(s) 364, 392, 560, 573, 1077, 1625
BspT107I GGYRCC 1 cut(s) 1009
BsrI ACTGG 3 cut(s) 183, 335, 1569
BssECI CCNNGG 4 cut(s) 165, 505, 832, 973
BssMI GATC 5 cut(s) 356, 397, 565, 1069, 1617
BssSI CACGAG 1 cut(s) 666
BssT1I CCWWGG 2 cut(s) 832, 973
Bst2BI CACGAG 1 cut(s) 666
Bst2UI CCWGG 3 cut(s) 273, 378, 390
Bst4CI ACNGT 4 cut(s) 166, 595, 1139, 1431
Bst6I CTCTTC 5 cut(s) 54, 528, 655, 1280, 1607
BstC8I GCNNGC 2 cut(s) 345, 1110
BstDEI CTNAG 5 cut(s) 41, 476, 619, 1317, 1677
BstDSI CCRYGG 2 cut(s) 165, 973
BstF5I GGATG 5 cut(s) 133, 324, 706, 1416, 1573
BstFNI CGCG 1 cut(s) 724
BstHHI GCGC 1 cut(s) 724
BstKTI GATC 5 cut(s) 359, 400, 568, 1072, 1620
BstMAI GTCTC 1 cut(s) 1479
BstMBI GATC 5 cut(s) 356, 397, 565, 1069, 1617
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 5 cut(s) 11, 14, 415, 749, 900
BstNI CCWGG 3 cut(s) 273, 378, 390
BstNSI RCATGY 2 cut(s) 83, 418
BstSCI CCNGG 6 cut(s) 271, 376, 388, 505, 1012, 1083
BstSFI CTRYAG 1 cut(s) 1646
BstSLI GKGCMC 1 cut(s) 1014
BstUI CGCG 1 cut(s) 724
BstV1I GCAGC 2 cut(s) 744, 1375
BstV2I GAAGAC 2 cut(s) 764, 1261
BstX2I RGATCY 2 cut(s) 356, 565
BstXI CCANNNNNNTGG 1 cut(s) 697
BstYI RGATCY 2 cut(s) 356, 565
BsuI GTATCC 3 cut(s) 254, 290, 477
BsuRI GGCC 2 cut(s) 752, 978
BtgI CCRYGG 2 cut(s) 165, 973
BtsCI GGATG 5 cut(s) 133, 324, 706, 1416, 1573
BtsIMutI CAGTG 3 cut(s) 190, 1144, 1678
Cac8I GCNNGC 2 cut(s) 345, 1110
CfoI GCGC 1 cut(s) 724
Cfr13I GGNCC 1 cut(s) 977
CseI GACGC 1 cut(s) 749
Csp6I GTAC 2 cut(s) 487, 1185
CviAII CATG 6 cut(s) 80, 153, 340, 415, 974, 1351
CviQI GTAC 2 cut(s) 487, 1185
DdeI CTNAG 5 cut(s) 41, 476, 619, 1317, 1677
DpnI GATC 5 cut(s) 358, 399, 567, 1071, 1619
DpnII GATC 5 cut(s) 356, 397, 565, 1069, 1617
DraI TTTAAA 2 cut(s) 876, 1537
Eam1104I CTCTTC 5 cut(s) 54, 528, 655, 1280, 1607
EarI CTCTTC 5 cut(s) 54, 528, 655, 1280, 1607
EciI GGCGGA 2 cut(s) 231, 858
Eco130I CCWWGG 2 cut(s) 832, 973
Eco147I AGGCCT 1 cut(s) 752
Eco24I GRGCYC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 1493
EcoRI GAATTC 1 cut(s) 95
EcoRII CCWGG 3 cut(s) 271, 376, 388
EcoT14I CCWWGG 2 cut(s) 832, 973
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 2 cut(s) 832, 973
FaeI CATG 6 cut(s) 83, 156, 343, 418, 977, 1354
FaqI GGGAC 5 cut(s) 465, 588, 747, 850, 1248
FatI CATG 6 cut(s) 79, 152, 339, 414, 973, 1350
FauI CCCGC 2 cut(s) 84, 1598
FblI GTMKAC 2 cut(s) 366, 1335
Fnu4HI GCNGC 6 cut(s) 6, 9, 12, 15, 758, 1364
FokI GGATG 5 cut(s) 140, 331, 713, 1403, 1580
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 6 cut(s) 6, 9, 12, 15, 758, 1364
FspBI CTAG 4 cut(s) 657, 788, 1182, 1293
GlaI GCGC 1 cut(s) 723
GluI GCNGC 6 cut(s) 6, 9, 12, 15, 758, 1364
GsaI CCCAGC 1 cut(s) 898
HaeIII GGCC 2 cut(s) 752, 978
HapII CCGG 6 cut(s) 507, 806, 821, 1014, 1085, 1391
HgaI GACGC 1 cut(s) 749
HhaI GCGC 1 cut(s) 724
Hin1II CATG 6 cut(s) 83, 156, 343, 418, 977, 1354
Hin6I GCGC 1 cut(s) 722
HinP1I GCGC 1 cut(s) 722
HincII GTYRAC 2 cut(s) 458, 1336
HindII GTYRAC 2 cut(s) 458, 1336
HinfI GANTC 3 cut(s) 68, 224, 478
HpaII CCGG 6 cut(s) 507, 806, 821, 1014, 1085, 1391
HphI GGTGA 2 cut(s) 543, 1510
Hpy166II GTNNAC 4 cut(s) 367, 458, 487, 1336
Hpy188I TCNGA 5 cut(s) 142, 599, 870, 907, 1042
Hpy188III TCNNGA 3 cut(s) 1063, 1223, 1493
Hpy8I GTNNAC 4 cut(s) 367, 458, 487, 1336
HpyAV CCTTC 4 cut(s) 528, 1060, 1231, 1243
HpyCH4III ACNGT 4 cut(s) 166, 595, 1139, 1431
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 14, 415, 749, 900
HpyF3I CTNAG 5 cut(s) 41, 476, 619, 1317, 1677
Hsp92II CATG 6 cut(s) 83, 156, 343, 418, 977, 1354
HspAI GCGC 1 cut(s) 722
Kzo9I GATC 5 cut(s) 356, 397, 565, 1069, 1617
LmnI GCTCC 4 cut(s) 132, 499, 676, 1016
Lsp1109I GCAGC 2 cut(s) 744, 1375
LweI GCATC 9 cut(s) 158, 190, 196, 202, 315, 363, 1170, 1216, 1593
MaeI CTAG 4 cut(s) 657, 788, 1182, 1293
MaeIII GTNAC 4 cut(s) 659, 797, 1431, 1471
MalI GATC 5 cut(s) 358, 399, 567, 1071, 1619
MboI GATC 5 cut(s) 356, 397, 565, 1069, 1617
MflI RGATCY 2 cut(s) 356, 565
MhlI GDGCHC 3 cut(s) 137, 673, 1014
MluCI AATT 7 cut(s) 23, 95, 103, 643, 862, 1036, 1540
MlyI GAGTC 1 cut(s) 487
MmeI TCCRAC 6 cut(s) 562, 577, 678, 893, 1118, 1188
MseI TTAA 7 cut(s) 875, 942, 951, 960, 1287, 1536, 1664
MslI CAYNNNNRTG 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 6 cut(s) 507, 806, 821, 1014, 1085, 1391
MspR9I CCNGG 6 cut(s) 273, 378, 390, 507, 1014, 1085
MvaI CCWGG 3 cut(s) 273, 378, 390
MvnI CGCG 1 cut(s) 724
MwoI GCNNNNNNNGC 5 cut(s) 11, 14, 415, 749, 900
NciI CCSGG 3 cut(s) 507, 1014, 1085
NcoI CCATGG 1 cut(s) 973
NdeII GATC 5 cut(s) 356, 397, 565, 1069, 1617
NlaIII CATG 6 cut(s) 83, 156, 343, 418, 977, 1354
NlaIV GGNNCC 5 cut(s) 134, 567, 819, 979, 1011
NmuCI GTSAC 2 cut(s) 659, 1471
NspI RCATGY 2 cut(s) 83, 418
OliI CACNNNNGTG 1 cut(s) 666
PceI AGGCCT 1 cut(s) 752
PfeI GAWTC 2 cut(s) 68, 224
PfoI TCCNGGA 1 cut(s) 1083
PkrI GCNGC 6 cut(s) 7, 10, 13, 16, 759, 1365
PleI GAGTC 1 cut(s) 486
PpsI GAGTC 1 cut(s) 486
PshBI ATTAAT 1 cut(s) 951
Psp6I CCWGG 3 cut(s) 271, 376, 388
PspFI CCCAGC 1 cut(s) 894
PspGI CCWGG 3 cut(s) 271, 376, 388
PspN4I GGNNCC 5 cut(s) 134, 567, 819, 979, 1011
PspPI GGNCC 1 cut(s) 977
PsrI GAACNNNNNNTAC 2 cut(s) 801, 833
PstI CTGCAG 1 cut(s) 1650
PsuI RGATCY 2 cut(s) 356, 565
RsaI GTAC 2 cut(s) 488, 1186
RsaNI GTAC 2 cut(s) 487, 1185
RseI CAYNNNNRTG 1 cut(s) 666
SalI GTCGAC 1 cut(s) 1334
SaqAI TTAA 7 cut(s) 875, 942, 951, 960, 1287, 1536, 1664
SatI GCNGC 6 cut(s) 6, 9, 12, 15, 758, 1364
Sau3AI GATC 5 cut(s) 356, 397, 565, 1069, 1617
Sau96I GGNCC 1 cut(s) 977
ScaI AGTACT 1 cut(s) 1186
SchI GAGTC 1 cut(s) 487
ScrFI CCNGG 6 cut(s) 273, 378, 390, 507, 1014, 1085
SduI GDGCHC 3 cut(s) 137, 673, 1014
SfaNI GCATC 9 cut(s) 158, 190, 196, 202, 315, 363, 1170, 1216, 1593
SfcI CTRYAG 1 cut(s) 1646
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 2 cut(s) 1448, 1491
SmoI CTYRAG 2 cut(s) 1448, 1491
Sse9I AATT 7 cut(s) 23, 95, 103, 643, 862, 1036, 1540
SseBI AGGCCT 1 cut(s) 752
SsiI CCGC 6 cut(s) 9, 77, 242, 629, 843, 1591
SspMI CTAG 4 cut(s) 657, 788, 1182, 1293
StuI AGGCCT 1 cut(s) 752
StyD4I CCNGG 6 cut(s) 271, 376, 388, 505, 1012, 1083
StyI CCWWGG 2 cut(s) 832, 973
TaaI ACNGT 4 cut(s) 166, 595, 1139, 1431
TaqI TCGA 3 cut(s) 161, 1335, 1518
TasI AATT 7 cut(s) 23, 95, 103, 643, 862, 1036, 1540
TatI WGTACW 1 cut(s) 1184
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 2 cut(s) 68, 224
Tru1I TTAA 7 cut(s) 875, 942, 951, 960, 1287, 1536, 1664
Tru9I TTAA 7 cut(s) 875, 942, 951, 960, 1287, 1536, 1664
TscAI CASTG 3 cut(s) 190, 1144, 1678
TseFI GTSAC 2 cut(s) 659, 1471
TseI GCWGC 5 cut(s) 5, 11, 14, 757, 1363
Tsp45I GTSAC 2 cut(s) 659, 1471
TspDTI ATGAA 6 cut(s) 17, 237, 294, 696, 1047, 1142
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 3 cut(s) 190, 1144, 1678
VspI ATTAAT 1 cut(s) 951
XapI RAATTY 2 cut(s) 95, 1036
XceI RCATGY 2 cut(s) 83, 418
XmiI GTMKAC 2 cut(s) 366, 1335
XspI CTAG 4 cut(s) 657, 788, 1182, 1293
ZrmI AGTACT 1 cut(s) 1186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.