Rh5AG162900

YTH domain-containing family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0006572
Physical Location & Seq
Forward (+)
17473966 .. 17480089
6124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG162900.1

Sequence Viewer

Length: 1311 bp
ATGGCTTCCTATCCAACAACCGCCTATTATGGATATAGCTATCCAGGTAGTTATGATATGGAAAACCAAGGATACTATGTCGGTGGAAGTACCGGGATGGAAGCTCAATACCCTGTCATGCAAGCAGATAATGGCTCTTTTGTCTACTTGATGCCAGGATATCAGCCTGGCTATGATCCTTACACGCAGTACCTGCCCATGACTACCATCAGTAGTGATGGACAATATGTCGGTCAACAGATGTATTCACCGATCAGCCCCATATACCAATCTCCAATCAATTCCCCTGGATATAATATCCCCTCTCCTCATCCTTATGGGGAGTTAGTCCCAACACCCTACTTGTGGGACCCATCTCTTATTGCAGATGGAACATATGGAAATGGCTACAATGGAGTTTTAGAAACACCGACTTCTAAATCTAATTTCTCATCCCCTAGTTACACTCGTGCTCCGTTCTCTAAATCTTTTACACCACCTTCAGGCAACGCTCCTTTAGAGACTAAGAGCTCAAGTTATGGTGCACGAAATCAGCCAAAACCAGTGAATAAGGCCTCACTGCATGCTCCGACTCTTCAATCAGAAGCAGCAGCCAAAGGGTACTATTCTGTTGCAAAGTTTCCTGTCTATAACCAAGGGACAGGTGGTTTGCTCTATCCAAACAATTCGTTAAAAGCAAATCCAAAGAGTTGGGGTGGTCCTGAGAAGTTGAAAACAAGAAGCAAGGCTAATAGTGTTAGAGATATCAATTTGTTCAGTGAGAAGAACCATGGTCCCAGAACAACCAATCCTAAAGGCGCCTTGGTCTCCCTCGCTGACAAGGAGAATGGAAAATGTGACAGCACAAAATCTATTATCAGGAAGGATCAATATAACCTTCCTGACTTTCCAACCAAATATGAGCAGGCACTTTTCTTTGTTATCAAATCCTACAGTGAAGACGATATTCATAAGAGCATTAAGTACAATGTATGGGCTAGTACTCCTAATGGGAATAGGAGGCTGGACAATGCTTATCAAGATGCACAAGAGAATGCGGCACAGAAAGGCTGCAAATCTCCTTTGTTCCTCTTCTTTTCGGTTAATGCAAGTGGTCAGTTCTGTGGAGTAGCTGAGATGGTTGGCCGTGTTGATTTTAATAAGAACATGGATTTCTGGCAACAGGATAAGTGGAATGGTTATTTCCCAGTCAAGTGGCATGTCATAAAAGATGTTCCAAATCCTCAGTTACGACATATAATACTTGAGAATAATGAAAACAAGCCTGTGACCAATAGTCGAGACACTCAAGAGGTATGCATTAACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

436

Amino Acids

48.51

Weight (kDa)

8.52

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 305 - 433 4.2e-44 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 797
AccI GTMKAC 1 cut(s) 144
AciI CCGC 2 cut(s) 21, 1037
AclWI GGATC 2 cut(s) 170, 873
AcoI YGGCCR 1 cut(s) 1123
AcuI CTGAAG 1 cut(s) 465
AcyI GRCGYC 1 cut(s) 798
AfaI GTAC 5 cut(s) 91, 191, 602, 965, 982
AfiI CCNNNNNNNGG 2 cut(s) 345, 482
AgsI TTSAA 2 cut(s) 578, 712
AhdI GACNNNNNGTC 2 cut(s) 227, 1275
AjnI CCWGG 4 cut(s) 43, 154, 166, 286
AloI GAACNNNNNNTCC 2 cut(s) 772, 804
AluBI AGCT 4 cut(s) 39, 104, 510, 1112
AluI AGCT 4 cut(s) 39, 104, 510, 1112
Alw21I GWGCWC 3 cut(s) 454, 512, 526
Alw26I GTCTC 3 cut(s) 494, 811, 1275
Alw44I GTGCAC 1 cut(s) 522
AlwI GGATC 2 cut(s) 170, 873
AlwNI CAGNNNCTG 1 cut(s) 193
AoxI GGCC 2 cut(s) 552, 1123
ApaLI GTGCAC 1 cut(s) 522
ApeKI GCWGC 3 cut(s) 587, 590, 1050
ArsI GACNNNNNNTTYG 2 cut(s) 631, 663
AspLEI GCGC 1 cut(s) 800
AspS9I GGNCC 3 cut(s) 349, 698, 773
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 240
AvaII GGWCC 3 cut(s) 349, 698, 773
BaeGI GKGCMC 1 cut(s) 526
BanI GGYRCC 1 cut(s) 797
BanII GRGCYC 1 cut(s) 512
BauI CACGAG 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 945
Bbv12I GWGCWC 3 cut(s) 454, 512, 526
BbvI GCAGC 3 cut(s) 599, 602, 1037
BccI CCATC 6 cut(s) 91, 212, 215, 361, 362, 1111
BceAI ACGGC 1 cut(s) 1110
BciT130I CCWGG 4 cut(s) 45, 156, 168, 288
BciVI GTATCC 1 cut(s) 65
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 3 cut(s) 494, 811, 1275
BfaI CTAG 3 cut(s) 438, 978, 1309
BfmI CTRYAG 1 cut(s) 931
BfoI RGCGCY 1 cut(s) 801
BfuAI ACCTGC 1 cut(s) 201
BfuI GTATCC 1 cut(s) 65
BisI GCNGC 4 cut(s) 588, 591, 1038, 1051
BlsI GCNGC 4 cut(s) 589, 592, 1039, 1052
BmcAI AGTACT 1 cut(s) 982
Bme1390I CCNGG 5 cut(s) 45, 94, 156, 168, 288
Bme18I GGWCC 3 cut(s) 349, 698, 773
BmeRI GACNNNNNGTC 2 cut(s) 227, 1275
BmgT120I GGNCC 3 cut(s) 349, 698, 773
BmiI GGNNCC 4 cut(s) 350, 351, 775, 799
BmrFI CCNGG 5 cut(s) 45, 94, 156, 168, 288
BmrI ACTGGG 1 cut(s) 1181
BmsI GCATC 2 cut(s) 141, 1012
BmuI ACTGGG 1 cut(s) 1181
BpiI GAAGAC 1 cut(s) 945
BpuEI CTTGAG 3 cut(s) 496, 1265, 1272
BpuMI CCSGG 1 cut(s) 94
BsaHI GRCGYC 1 cut(s) 798
BsaI GGTCTC 1 cut(s) 811
BsaJI CCNNGG 5 cut(s) 67, 286, 634, 769, 801
BsaXI ACNNNNNCTCC 2 cut(s) 436, 466
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 482
Bse1I ACTGG 2 cut(s) 542, 1187
BseBI CCWGG 4 cut(s) 45, 156, 168, 288
BseDI CCNNGG 5 cut(s) 67, 286, 634, 769, 801
BseGI GGATG 3 cut(s) 102, 310, 431
BseLI CCNNNNNNNGG 2 cut(s) 345, 482
BseMII CTCAG 3 cut(s) 693, 1104, 1238
BseNI ACTGG 2 cut(s) 542, 1187
BseRI GAGGAG 1 cut(s) 297
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 3 cut(s) 599, 602, 1037
BshFI GGCC 2 cut(s) 554, 1125
BshNI GGYRCC 1 cut(s) 797
BsiHKAI GWGCWC 3 cut(s) 454, 512, 526
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 4 cut(s) 314, 362, 652, 759
BslI CCNNNNNNNGG 2 cut(s) 345, 482
BsmAI GTCTC 3 cut(s) 494, 811, 1275
BsmFI GGGAC 4 cut(s) 314, 362, 652, 759
BsmI GAATGC 1 cut(s) 1039
BsnI GGCC 2 cut(s) 554, 1125
Bso31I GGTCTC 1 cut(s) 811
Bsp1286I GDGCHC 3 cut(s) 454, 512, 526
Bsp143I GATC 3 cut(s) 175, 252, 865
Bsp19I CCATGG 1 cut(s) 769
BspACI CCGC 2 cut(s) 21, 1037
BspANI GGCC 2 cut(s) 554, 1125
BspCNI CTCAG 3 cut(s) 694, 1105, 1237
BspLI GGNNCC 4 cut(s) 350, 351, 775, 799
BspMI ACCTGC 1 cut(s) 201
BspPI GGATC 2 cut(s) 170, 873
BspT107I GGYRCC 1 cut(s) 797
BspTNI GGTCTC 1 cut(s) 811
BsrI ACTGG 2 cut(s) 542, 1187
BssECI CCNNGG 5 cut(s) 67, 286, 634, 769, 801
BssMI GATC 3 cut(s) 175, 252, 865
BssNI GRCGYC 1 cut(s) 798
BssSI CACGAG 1 cut(s) 447
BssT1I CCWWGG 4 cut(s) 67, 634, 769, 801
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 4 cut(s) 45, 156, 168, 288
Bst4CI ACNGT 1 cut(s) 935
Bst6I CTCTTC 2 cut(s) 579, 1076
BstACI GRCGYC 1 cut(s) 798
BstAPI GCANNNNNTGC 1 cut(s) 193
BstC8I GCNNGC 3 cut(s) 123, 564, 906
BstDEI CTNAG 4 cut(s) 504, 702, 1113, 1224
BstDSI CCRYGG 1 cut(s) 769
BstF5I GGATG 3 cut(s) 102, 310, 431
BstH2I RGCGCY 1 cut(s) 801
BstHHI GCGC 1 cut(s) 800
BstKTI GATC 3 cut(s) 178, 255, 868
BstMAI GTCTC 3 cut(s) 494, 811, 1275
BstMBI GATC 3 cut(s) 175, 252, 865
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 4 cut(s) 45, 156, 168, 288
BstNSI RCATGY 2 cut(s) 566, 1202
BstSCI CCNGG 5 cut(s) 43, 92, 154, 166, 286
BstSFI CTRYAG 1 cut(s) 931
BstSLI GKGCMC 1 cut(s) 526
BstV1I GCAGC 3 cut(s) 599, 602, 1037
BstV2I GAAGAC 1 cut(s) 945
BstXI CCANNNNNNTGG 2 cut(s) 690, 1194
BsuI GTATCC 1 cut(s) 65
BsuRI GGCC 2 cut(s) 554, 1125
BtgI CCRYGG 1 cut(s) 769
BtsCI GGATG 3 cut(s) 102, 310, 431
BtsI GCAGTG 1 cut(s) 557
BtsIMutI CAGTG 4 cut(s) 549, 557, 763, 940
BveI ACCTGC 1 cut(s) 201
Cac8I GCNNGC 3 cut(s) 123, 564, 906
CaiI CAGNNNCTG 1 cut(s) 193
CfoI GCGC 1 cut(s) 800
Cfr13I GGNCC 3 cut(s) 349, 698, 773
Csp6I GTAC 5 cut(s) 90, 190, 601, 964, 981
CviAII CATG 6 cut(s) 118, 199, 563, 770, 1147, 1199
CviQI GTAC 5 cut(s) 90, 190, 601, 964, 981
DdeI CTNAG 4 cut(s) 504, 702, 1113, 1224
DinI GGCGCC 1 cut(s) 799
DpnI GATC 3 cut(s) 177, 254, 867
DpnII GATC 3 cut(s) 175, 252, 865
DriI GACNNNNNGTC 2 cut(s) 227, 1275
EaeI YGGCCR 1 cut(s) 1123
Eam1104I CTCTTC 2 cut(s) 579, 1076
Eam1105I GACNNNNNGTC 2 cut(s) 227, 1275
EarI CTCTTC 2 cut(s) 579, 1076
Ecl136II GAGCTC 1 cut(s) 510
Eco130I CCWWGG 4 cut(s) 67, 634, 769, 801
Eco147I AGGCCT 1 cut(s) 554
Eco24I GRGCYC 1 cut(s) 512
Eco31I GGTCTC 1 cut(s) 811
Eco32I GATATC 2 cut(s) 161, 745
Eco47I GGWCC 3 cut(s) 349, 698, 773
Eco53kI GAGCTC 1 cut(s) 510
Eco57I CTGAAG 1 cut(s) 465
EcoICRI GAGCTC 1 cut(s) 510
EcoO109I RGGNCCY 1 cut(s) 349
EcoRII CCWGG 4 cut(s) 43, 154, 166, 286
EcoRV GATATC 2 cut(s) 161, 745
EcoT14I CCWWGG 4 cut(s) 67, 634, 769, 801
EcoT22I ATGCAT 1 cut(s) 1301
EcoT38I GRGCYC 1 cut(s) 512
EgeI GGCGCC 1 cut(s) 799
EheI GGCGCC 1 cut(s) 799
ErhI CCWWGG 4 cut(s) 67, 634, 769, 801
FaeI CATG 6 cut(s) 121, 202, 566, 773, 1150, 1202
FaqI GGGAC 4 cut(s) 314, 362, 652, 759
FatI CATG 6 cut(s) 117, 198, 562, 769, 1146, 1198
FauNDI CATATG 1 cut(s) 376
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 4 cut(s) 588, 591, 1038, 1051
FokI GGATG 3 cut(s) 109, 297, 418
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 4 cut(s) 588, 591, 1038, 1051
FspBI CTAG 3 cut(s) 438, 978, 1309
GlaI GCGC 1 cut(s) 799
GluI GCNGC 4 cut(s) 588, 591, 1038, 1051
HaeII RGCGCY 1 cut(s) 801
HaeIII GGCC 2 cut(s) 554, 1125
HapII CCGG 1 cut(s) 93
HhaI GCGC 1 cut(s) 800
Hin1I GRCGYC 1 cut(s) 798
Hin1II CATG 6 cut(s) 121, 202, 566, 773, 1150, 1202
Hin6I GCGC 1 cut(s) 798
HinP1I GCGC 1 cut(s) 798
HincII GTYRAC 1 cut(s) 236
HindII GTYRAC 1 cut(s) 236
HinfI GANTC 1 cut(s) 571
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 3 cut(s) 145, 236, 524
Hpy188I TCNGA 2 cut(s) 570, 583
Hpy188III TCNNGA 6 cut(s) 701, 859, 881, 1019, 1280, 1289
Hpy8I GTNNAC 3 cut(s) 145, 236, 524
HpyAV CCTTC 3 cut(s) 489, 856, 887
HpyCH4III ACNGT 1 cut(s) 935
HpyCH4V TGCA 9 cut(s) 121, 365, 524, 562, 614, 1025, 1053, 1088, 1299
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 4 cut(s) 504, 702, 1113, 1224
Hsp92I GRCGYC 1 cut(s) 798
Hsp92II CATG 6 cut(s) 121, 202, 566, 773, 1150, 1202
HspAI GCGC 1 cut(s) 798
KasI GGCGCC 1 cut(s) 797
KflI GGGWCCC 1 cut(s) 349
Kzo9I GATC 3 cut(s) 175, 252, 865
LmnI GCTCC 3 cut(s) 457, 496, 571
Lsp1109I GCAGC 3 cut(s) 599, 602, 1037
LweI GCATC 2 cut(s) 141, 1012
MaeI CTAG 3 cut(s) 438, 978, 1309
MaeIII GTNAC 4 cut(s) 440, 836, 1227, 1267
MalI GATC 3 cut(s) 177, 254, 867
MboI GATC 3 cut(s) 175, 252, 865
MboII GAAGA 4 cut(s) 566, 775, 950, 1063
MhlI GDGCHC 3 cut(s) 454, 512, 526
MluCI AATT 4 cut(s) 280, 424, 664, 748
Mly113I GGCGCC 1 cut(s) 798
MlyI GAGTC 1 cut(s) 565
MmeI TCCRAC 3 cut(s) 38, 593, 914
MnlI CCTC 8 cut(s) 313, 318, 565, 821, 993, 1079, 1233, 1285
Mph1103I ATGCAT 1 cut(s) 1301
MseI TTAA 5 cut(s) 671, 960, 1083, 1137, 1302
MslI CAYNNNNRTG 1 cut(s) 315
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 5 cut(s) 45, 94, 156, 168, 288
Mva1269I GAATGC 1 cut(s) 1039
MvaI CCWGG 4 cut(s) 45, 156, 168, 288
MwoI GCNNNNNNNGC 1 cut(s) 193
NarI GGCGCC 1 cut(s) 798
NciI CCSGG 1 cut(s) 94
NcoI CCATGG 1 cut(s) 769
NdeI CATATG 1 cut(s) 376
NdeII GATC 3 cut(s) 175, 252, 865
NlaIII CATG 6 cut(s) 121, 202, 566, 773, 1150, 1202
NlaIV GGNNCC 4 cut(s) 350, 351, 775, 799
NmuCI GTSAC 2 cut(s) 836, 1267
NsiI ATGCAT 1 cut(s) 1301
NspI RCATGY 2 cut(s) 566, 1202
PaeI GCATGC 1 cut(s) 566
PceI AGGCCT 1 cut(s) 554
PctI GAATGC 1 cut(s) 1039
PkrI GCNGC 4 cut(s) 589, 592, 1039, 1052
PleI GAGTC 1 cut(s) 565
PluTI GGCGCC 1 cut(s) 801
PpsI GAGTC 1 cut(s) 565
PpuMI RGGWCCY 1 cut(s) 349
Psp124BI GAGCTC 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 349
Psp6I CCWGG 4 cut(s) 43, 154, 166, 286
PspGI CCWGG 4 cut(s) 43, 154, 166, 286
PspN4I GGNNCC 4 cut(s) 350, 351, 775, 799
PspPI GGNCC 3 cut(s) 349, 698, 773
PspPPI RGGWCCY 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 193
RsaI GTAC 5 cut(s) 91, 191, 602, 965, 982
RsaNI GTAC 5 cut(s) 90, 190, 601, 964, 981
RseI CAYNNNNRTG 1 cut(s) 315
SacI GAGCTC 1 cut(s) 512
SaqAI TTAA 5 cut(s) 671, 960, 1083, 1137, 1302
SatI GCNGC 4 cut(s) 588, 591, 1038, 1051
Sau3AI GATC 3 cut(s) 175, 252, 865
Sau96I GGNCC 3 cut(s) 349, 698, 773
ScaI AGTACT 1 cut(s) 982
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 5 cut(s) 45, 94, 156, 168, 288
SduI GDGCHC 3 cut(s) 454, 512, 526
SfaNI GCATC 2 cut(s) 141, 1012
SfcI CTRYAG 1 cut(s) 931
SfoI GGCGCC 1 cut(s) 799
SinI GGWCC 3 cut(s) 349, 698, 773
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 3 cut(s) 511, 1244, 1287
SmoI CTYRAG 3 cut(s) 511, 1244, 1287
SphI GCATGC 1 cut(s) 566
Sse9I AATT 4 cut(s) 280, 424, 664, 748
SseBI AGGCCT 1 cut(s) 554
SsiI CCGC 2 cut(s) 21, 1037
SspDI GGCGCC 1 cut(s) 797
SspMI CTAG 3 cut(s) 438, 978, 1309
SstI GAGCTC 1 cut(s) 512
StuI AGGCCT 1 cut(s) 554
StyD4I CCNGG 5 cut(s) 43, 92, 154, 166, 286
StyI CCWWGG 4 cut(s) 67, 634, 769, 801
TaaI ACNGT 1 cut(s) 935
TaqI TCGA 1 cut(s) 1279
TaqII GACCGA 1 cut(s) 221
TasI AATT 4 cut(s) 280, 424, 664, 748
TatI WGTACW 2 cut(s) 963, 980
TauI GCSGC 1 cut(s) 1040
Tru1I TTAA 5 cut(s) 671, 960, 1083, 1137, 1302
Tru9I TTAA 5 cut(s) 671, 960, 1083, 1137, 1302
TscAI CASTG 4 cut(s) 549, 564, 763, 940
TseFI GTSAC 2 cut(s) 836, 1267
TseI GCWGC 3 cut(s) 587, 590, 1050
Tsp45I GTSAC 2 cut(s) 836, 1267
TspDTI ATGAA 2 cut(s) 938, 1269
TspGWI ACGGA 1 cut(s) 444
TspRI CASTG 4 cut(s) 549, 564, 763, 940
VneI GTGCAC 1 cut(s) 522
VpaK11BI GGWCC 3 cut(s) 349, 698, 773
XceI RCATGY 2 cut(s) 566, 1202
XcmI CCANNNNNNNNNTGG 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 3 cut(s) 438, 978, 1309
ZrmI AGTACT 1 cut(s) 982
Zsp2I ATGCAT 1 cut(s) 1301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.