Rh5BG162100

YTH domain-containing family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006572
Physical Location & Seq
Forward (+)
16873788 .. 16880823
7036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG162100.1

Sequence Viewer

Length: 1368 bp
ATGCAAGCAGATAATGGCTCTTTTGTCTACTTGATGCCAGGATATCAGCCTGGCTATGATCCTTACACGCAGTACCTGCCCATGACTACCATCAGTAGTGATGGACAATATGTCGGTCAACAGATGTATTCACCGATCAGCCCCATATACCAATCTCCAATCAATTCCCCTGGATATAATATCCCCTCTCCTCATCCTTATGGGGAGTTAGTCCCAACACCCTACTTGTGGGACCCATCTCTTATTGCAGATGGAACATATGGAAATGGCTACAATGGAGTTTTAGAAACACCGACTTCTAAATCTAATTTCTCATCCCCTAGTTACACTCGTGCTCCGTTCTCTAAATCTTTTACACCACCTTCAGGCAACGCTCCTTTAGAGACTAAGAGCTCGAGTTATGGTGCACGAAATCAGCCAAAACCAGTGAACAAGGCCTCACTGCATGCTCCGACTCTTCAATCAGAAGCAGCAGCCAAAGGGTACTATTCCGTTGCAAAGTTTCCTGTCTATAACCAAGGGACAGGTGGTTTGCTCTATCCAAACAATTCGTTAAAAGCAAATCCAAAGGGTTGGGGTGGTCCTGAGAAGTTGAAAACAAGAAGCAAGGCTAATAGTGTTAGAGATATCAATTTGTTCAGTGAGAAGAACCATGGTCCCAGAACAACCAATCCTAAAGGCGCCTTGGTCTCCATGGCTGACAAGGAGAATGGAAAATGTGACAGCACAAAATCTATTATCAGGAAGGATCAATATAACCTTCCTGACTTTCCAACCAAATATGAGCAGGCACTTTTCTTTGTTATCAAATCCTACAGTGAAGACGATATTCATAAGAGCGTTAAGTACAATGTATGGGCTAGTACTCCTAATGGCAATAGGAGGCTGGACAATGCTTATCAAGATGCACAAGAGAATGCGGCACAGAAAGGCTGCAAATGTCCTTTGTTCCTCTTCTTTTCGGTTAATGCAAGTGGTCAGTTCTGTGGAGTAGCTGAGATGGTTGGCCGTGTTGATTTTAATAAGAACATGGATTTCTGGCAACAGGATAAGTGGAATGGTTATTTCCCAGTCAAGTGGCATGTCATAAAAGATGTTCCAAATCCTCAGTTACGACATATAATACTTGAGAATAATGAAAACAAGCCTGTGACCAATAGTCGAGACACTCAAGAGGTCAAATTCCTTCAGGGTATCGAAATGTTGAACATTTTCAAAAATTATTCATCAAAGACATCAATATTGGACGACTTTGATTTCTATGAAAGCCGTCAGAAAGTGATGCAAGAGAAGAGGATCAGGCAGTCTACGCCTTACTATGATTTGCAGCATAAAATCGAAGAATTGACTATCACTGCTTCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

455

Amino Acids

51.24

Weight (kDa)

8.77

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 266 - 406 2.5e-47 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 680
AccI GTMKAC 2 cut(s) 27, 1307
AciI CCGC 1 cut(s) 920
AclWI GGATC 3 cut(s) 53, 756, 1304
AcoI YGGCCR 1 cut(s) 1006
AcsI RAATTY 1 cut(s) 1181
AcuI CTGAAG 3 cut(s) 348, 1172, 1344
AcyI GRCGYC 1 cut(s) 681
AfaI GTAC 4 cut(s) 74, 485, 848, 865
AfiI CCNNNNNNNGG 2 cut(s) 228, 365
AgsI TTSAA 4 cut(s) 461, 595, 1207, 1216
AhdI GACNNNNNGTC 2 cut(s) 110, 1158
AjnI CCWGG 3 cut(s) 37, 49, 169
AloI GAACNNNNNNTCC 2 cut(s) 655, 687
AluBI AGCT 2 cut(s) 393, 995
AluI AGCT 2 cut(s) 393, 995
Alw21I GWGCWC 3 cut(s) 337, 395, 409
Alw26I GTCTC 3 cut(s) 377, 694, 1158
Alw44I GTGCAC 1 cut(s) 405
AlwI GGATC 3 cut(s) 53, 756, 1304
AlwNI CAGNNNCTG 1 cut(s) 76
Ama87I CYCGRG 1 cut(s) 394
AoxI GGCC 2 cut(s) 435, 1006
ApaLI GTGCAC 1 cut(s) 405
ApeKI GCWGC 4 cut(s) 470, 473, 933, 1327
ApoI RAATTY 1 cut(s) 1181
ArsI GACNNNNNNTTYG 2 cut(s) 514, 546
Asp700I GAANNNNTTC 1 cut(s) 1211
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 3 cut(s) 232, 581, 656
AsuHPI GGTGA 1 cut(s) 123
AvaI CYCGRG 1 cut(s) 394
AvaII GGWCC 3 cut(s) 232, 581, 656
BaeGI GKGCMC 1 cut(s) 409
BanI GGYRCC 1 cut(s) 680
BanII GRGCYC 1 cut(s) 395
BauI CACGAG 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 828
Bbv12I GWGCWC 3 cut(s) 337, 395, 409
BbvI GCAGC 4 cut(s) 482, 485, 920, 1339
BccI CCATC 5 cut(s) 95, 98, 244, 245, 994
BceAI ACGGC 2 cut(s) 993, 1254
BciT130I CCWGG 3 cut(s) 39, 51, 171
BcoDI GTCTC 3 cut(s) 377, 694, 1158
BfaI CTAG 2 cut(s) 321, 861
BfmI CTRYAG 1 cut(s) 814
BfoI RGCGCY 1 cut(s) 684
BfuAI ACCTGC 1 cut(s) 84
BisI GCNGC 5 cut(s) 471, 474, 921, 934, 1328
BlsI GCNGC 5 cut(s) 472, 475, 922, 935, 1329
BmcAI AGTACT 1 cut(s) 865
Bme1390I CCNGG 3 cut(s) 39, 51, 171
Bme18I GGWCC 3 cut(s) 232, 581, 656
BmeRI GACNNNNNGTC 2 cut(s) 110, 1158
BmeT110I CYCGRG 1 cut(s) 394
BmgT120I GGNCC 3 cut(s) 232, 581, 656
BmiI GGNNCC 4 cut(s) 233, 234, 658, 682
BmrFI CCNGG 3 cut(s) 39, 51, 171
BmrI ACTGGG 1 cut(s) 1064
BmsI GCATC 3 cut(s) 24, 895, 1272
BmuI ACTGGG 1 cut(s) 1064
BpiI GAAGAC 1 cut(s) 828
BpuEI CTTGAG 2 cut(s) 1148, 1155
BsaHI GRCGYC 1 cut(s) 681
BsaI GGTCTC 1 cut(s) 694
BsaJI CCNNGG 5 cut(s) 169, 517, 652, 684, 693
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 365
Bse1I ACTGG 2 cut(s) 425, 1070
BseBI CCWGG 3 cut(s) 39, 51, 171
BseDI CCNNGG 5 cut(s) 169, 517, 652, 684, 693
BseGI GGATG 2 cut(s) 193, 314
BseLI CCNNNNNNNGG 2 cut(s) 228, 365
BseMII CTCAG 3 cut(s) 576, 987, 1121
BseNI ACTGG 2 cut(s) 425, 1070
BseRI GAGGAG 1 cut(s) 180
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 4 cut(s) 482, 485, 920, 1339
BshFI GGCC 2 cut(s) 437, 1008
BshNI GGYRCC 1 cut(s) 680
BsiHKAI GWGCWC 3 cut(s) 337, 395, 409
BsiHKCI CYCGRG 1 cut(s) 394
BslFI GGGAC 4 cut(s) 197, 245, 535, 642
BslI CCNNNNNNNGG 2 cut(s) 228, 365
BsmAI GTCTC 3 cut(s) 377, 694, 1158
BsmFI GGGAC 4 cut(s) 197, 245, 535, 642
BsmI GAATGC 1 cut(s) 922
BsnI GGCC 2 cut(s) 437, 1008
Bso31I GGTCTC 1 cut(s) 694
BsoBI CYCGRG 1 cut(s) 394
Bsp1286I GDGCHC 3 cut(s) 337, 395, 409
Bsp143I GATC 4 cut(s) 58, 135, 748, 1296
Bsp19I CCATGG 2 cut(s) 652, 693
BspACI CCGC 1 cut(s) 920
BspANI GGCC 2 cut(s) 437, 1008
BspCNI CTCAG 3 cut(s) 577, 988, 1120
BspLI GGNNCC 4 cut(s) 233, 234, 658, 682
BspMI ACCTGC 1 cut(s) 84
BspPI GGATC 3 cut(s) 53, 756, 1304
BspT107I GGYRCC 1 cut(s) 680
BspTNI GGTCTC 1 cut(s) 694
BsrI ACTGG 2 cut(s) 425, 1070
BssECI CCNNGG 5 cut(s) 169, 517, 652, 684, 693
BssMI GATC 4 cut(s) 58, 135, 748, 1296
BssNI GRCGYC 1 cut(s) 681
BssSI CACGAG 1 cut(s) 330
BssT1I CCWWGG 4 cut(s) 517, 652, 684, 693
Bst2BI CACGAG 1 cut(s) 330
Bst2UI CCWGG 3 cut(s) 39, 51, 171
Bst4CI ACNGT 1 cut(s) 818
Bst6I CTCTTC 3 cut(s) 462, 959, 1286
BstACI GRCGYC 1 cut(s) 681
BstAPI GCANNNNNTGC 1 cut(s) 76
BstC8I GCNNGC 3 cut(s) 6, 447, 789
BstDEI CTNAG 4 cut(s) 387, 585, 996, 1107
BstDSI CCRYGG 2 cut(s) 652, 693
BstF5I GGATG 2 cut(s) 193, 314
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 4 cut(s) 61, 138, 751, 1299
BstMAI GTCTC 3 cut(s) 377, 694, 1158
BstMBI GATC 4 cut(s) 58, 135, 748, 1296
BstMWI GCNNNNNNNGC 2 cut(s) 76, 1309
BstNI CCWGG 3 cut(s) 39, 51, 171
BstNSI RCATGY 2 cut(s) 449, 1085
BstSCI CCNGG 3 cut(s) 37, 49, 169
BstSFI CTRYAG 1 cut(s) 814
BstSLI GKGCMC 1 cut(s) 409
BstV1I GCAGC 4 cut(s) 482, 485, 920, 1339
BstV2I GAAGAC 1 cut(s) 828
BstXI CCANNNNNNTGG 2 cut(s) 573, 1077
BsuRI GGCC 2 cut(s) 437, 1008
BtgI CCRYGG 2 cut(s) 652, 693
BtsCI GGATG 2 cut(s) 193, 314
BtsI GCAGTG 2 cut(s) 440, 1353
BtsIMutI CAGTG 5 cut(s) 432, 440, 646, 823, 1353
BveI ACCTGC 1 cut(s) 84
Cac8I GCNNGC 3 cut(s) 6, 447, 789
CaiI CAGNNNCTG 1 cut(s) 76
CfoI GCGC 1 cut(s) 683
Cfr13I GGNCC 3 cut(s) 232, 581, 656
Csp6I GTAC 4 cut(s) 73, 484, 847, 864
CviAII CATG 6 cut(s) 82, 446, 653, 694, 1030, 1082
CviQI GTAC 4 cut(s) 73, 484, 847, 864
DdeI CTNAG 4 cut(s) 387, 585, 996, 1107
DinI GGCGCC 1 cut(s) 682
DpnI GATC 4 cut(s) 60, 137, 750, 1298
DpnII GATC 4 cut(s) 58, 135, 748, 1296
DriI GACNNNNNGTC 2 cut(s) 110, 1158
EaeI YGGCCR 1 cut(s) 1006
Eam1104I CTCTTC 3 cut(s) 462, 959, 1286
Eam1105I GACNNNNNGTC 2 cut(s) 110, 1158
EarI CTCTTC 3 cut(s) 462, 959, 1286
Ecl136II GAGCTC 1 cut(s) 393
Eco130I CCWWGG 4 cut(s) 517, 652, 684, 693
Eco147I AGGCCT 1 cut(s) 437
Eco24I GRGCYC 1 cut(s) 395
Eco31I GGTCTC 1 cut(s) 694
Eco32I GATATC 2 cut(s) 44, 628
Eco47I GGWCC 3 cut(s) 232, 581, 656
Eco53kI GAGCTC 1 cut(s) 393
Eco57I CTGAAG 3 cut(s) 348, 1172, 1344
Eco88I CYCGRG 1 cut(s) 394
EcoICRI GAGCTC 1 cut(s) 393
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 3 cut(s) 37, 49, 169
EcoRV GATATC 2 cut(s) 44, 628
EcoT14I CCWWGG 4 cut(s) 517, 652, 684, 693
EcoT38I GRGCYC 1 cut(s) 395
EgeI GGCGCC 1 cut(s) 682
EheI GGCGCC 1 cut(s) 682
ErhI CCWWGG 4 cut(s) 517, 652, 684, 693
FaeI CATG 6 cut(s) 85, 449, 656, 697, 1033, 1085
FaqI GGGAC 4 cut(s) 197, 245, 535, 642
FatI CATG 6 cut(s) 81, 445, 652, 693, 1029, 1081
FauNDI CATATG 1 cut(s) 259
FblI GTMKAC 2 cut(s) 27, 1307
Fnu4HI GCNGC 5 cut(s) 471, 474, 921, 934, 1328
FokI GGATG 2 cut(s) 180, 301
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 5 cut(s) 471, 474, 921, 934, 1328
FspBI CTAG 2 cut(s) 321, 861
GlaI GCGC 1 cut(s) 682
GluI GCNGC 5 cut(s) 471, 474, 921, 934, 1328
HaeII RGCGCY 1 cut(s) 684
HaeIII GGCC 2 cut(s) 437, 1008
HhaI GCGC 1 cut(s) 683
Hin1I GRCGYC 1 cut(s) 681
Hin1II CATG 6 cut(s) 85, 449, 656, 697, 1033, 1085
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HincII GTYRAC 1 cut(s) 119
HindII GTYRAC 1 cut(s) 119
HinfI GANTC 1 cut(s) 454
HphI GGTGA 1 cut(s) 123
Hpy166II GTNNAC 5 cut(s) 28, 119, 407, 430, 1308
Hpy188I TCNGA 4 cut(s) 453, 466, 1275, 1363
Hpy188III TCNNGA 6 cut(s) 584, 742, 764, 902, 1163, 1172
Hpy8I GTNNAC 5 cut(s) 28, 119, 407, 430, 1308
HpyAV CCTTC 4 cut(s) 372, 739, 770, 1196
HpyCH4III ACNGT 1 cut(s) 818
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 1309
HpyF3I CTNAG 4 cut(s) 387, 585, 996, 1107
Hsp92I GRCGYC 1 cut(s) 681
Hsp92II CATG 6 cut(s) 85, 449, 656, 697, 1033, 1085
HspAI GCGC 1 cut(s) 681
KasI GGCGCC 1 cut(s) 680
KflI GGGWCCC 1 cut(s) 232
Kzo9I GATC 4 cut(s) 58, 135, 748, 1296
LmnI GCTCC 3 cut(s) 340, 379, 454
Lsp1109I GCAGC 4 cut(s) 482, 485, 920, 1339
LweI GCATC 3 cut(s) 24, 895, 1272
MaeI CTAG 2 cut(s) 321, 861
MaeIII GTNAC 4 cut(s) 323, 719, 1110, 1150
MalI GATC 4 cut(s) 60, 137, 750, 1298
MboI GATC 4 cut(s) 58, 135, 748, 1296
MboII GAAGA 6 cut(s) 449, 658, 833, 946, 1303, 1352
MhlI GDGCHC 3 cut(s) 337, 395, 409
MluCI AATT 7 cut(s) 163, 307, 547, 631, 1181, 1219, 1343
Mly113I GGCGCC 1 cut(s) 681
MlyI GAGTC 1 cut(s) 448
MmeI TCCRAC 2 cut(s) 476, 797
MnlI CCTC 8 cut(s) 196, 201, 448, 876, 962, 1116, 1168, 1287
MroXI GAANNNNTTC 1 cut(s) 1211
MseI TTAA 4 cut(s) 554, 843, 966, 1020
MslI CAYNNNNRTG 1 cut(s) 198
MspR9I CCNGG 3 cut(s) 39, 51, 171
Mva1269I GAATGC 1 cut(s) 922
MvaI CCWGG 3 cut(s) 39, 51, 171
MwoI GCNNNNNNNGC 2 cut(s) 76, 1309
NarI GGCGCC 1 cut(s) 681
NcoI CCATGG 2 cut(s) 652, 693
NdeI CATATG 1 cut(s) 259
NdeII GATC 4 cut(s) 58, 135, 748, 1296
NlaIII CATG 6 cut(s) 85, 449, 656, 697, 1033, 1085
NlaIV GGNNCC 4 cut(s) 233, 234, 658, 682
NmuCI GTSAC 2 cut(s) 719, 1150
NspI RCATGY 2 cut(s) 449, 1085
PaeI GCATGC 1 cut(s) 449
PaeR7I CTCGAG 1 cut(s) 394
PceI AGGCCT 1 cut(s) 437
PctI GAATGC 1 cut(s) 922
PdmI GAANNNNTTC 1 cut(s) 1211
PkrI GCNGC 5 cut(s) 472, 475, 922, 935, 1329
PleI GAGTC 1 cut(s) 448
PluTI GGCGCC 1 cut(s) 684
PpsI GAGTC 1 cut(s) 448
PpuMI RGGWCCY 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 395
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 3 cut(s) 37, 49, 169
PspGI CCWGG 3 cut(s) 37, 49, 169
PspN4I GGNNCC 4 cut(s) 233, 234, 658, 682
PspPI GGNCC 3 cut(s) 232, 581, 656
PspPPI RGGWCCY 1 cut(s) 232
PspXI VCTCGAGB 1 cut(s) 394
PstNI CAGNNNCTG 1 cut(s) 76
RsaI GTAC 4 cut(s) 74, 485, 848, 865
RsaNI GTAC 4 cut(s) 73, 484, 847, 864
RseI CAYNNNNRTG 1 cut(s) 198
SacI GAGCTC 1 cut(s) 395
SaqAI TTAA 4 cut(s) 554, 843, 966, 1020
SatI GCNGC 5 cut(s) 471, 474, 921, 934, 1328
Sau3AI GATC 4 cut(s) 58, 135, 748, 1296
Sau96I GGNCC 3 cut(s) 232, 581, 656
ScaI AGTACT 1 cut(s) 865
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 3 cut(s) 39, 51, 171
SduI GDGCHC 3 cut(s) 337, 395, 409
SetI ASST 7 cut(s) 78, 364, 395, 529, 762, 997, 1179
SfaNI GCATC 3 cut(s) 24, 895, 1272
SfcI CTRYAG 1 cut(s) 814
SfoI GGCGCC 1 cut(s) 682
Sfr274I CTCGAG 1 cut(s) 394
SinI GGWCC 3 cut(s) 232, 581, 656
SlaI CTCGAG 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 3 cut(s) 394, 1127, 1170
SmoI CTYRAG 3 cut(s) 394, 1127, 1170
SphI GCATGC 1 cut(s) 449
Sse9I AATT 7 cut(s) 163, 307, 547, 631, 1181, 1219, 1343
SseBI AGGCCT 1 cut(s) 437
SsiI CCGC 1 cut(s) 920
SspDI GGCGCC 1 cut(s) 680
SspI AATATT 1 cut(s) 1242
SspMI CTAG 2 cut(s) 321, 861
SstI GAGCTC 1 cut(s) 395
StuI AGGCCT 1 cut(s) 437
StyD4I CCNGG 3 cut(s) 37, 49, 169
StyI CCWWGG 4 cut(s) 517, 652, 684, 693
TaaI ACNGT 1 cut(s) 818
TaqI TCGA 4 cut(s) 395, 1162, 1197, 1338
TaqII GACCGA 1 cut(s) 104
TasI AATT 7 cut(s) 163, 307, 547, 631, 1181, 1219, 1343
TatI WGTACW 2 cut(s) 846, 863
TauI GCSGC 1 cut(s) 923
Tru1I TTAA 4 cut(s) 554, 843, 966, 1020
Tru9I TTAA 4 cut(s) 554, 843, 966, 1020
TscAI CASTG 5 cut(s) 432, 447, 646, 823, 1360
TseFI GTSAC 2 cut(s) 719, 1150
TseI GCWGC 4 cut(s) 470, 473, 933, 1327
Tsp45I GTSAC 2 cut(s) 719, 1150
TspDTI ATGAA 4 cut(s) 821, 1152, 1215, 1278
TspGWI ACGGA 2 cut(s) 327, 481
TspRI CASTG 5 cut(s) 432, 447, 646, 823, 1360
VneI GTGCAC 1 cut(s) 405
VpaK11BI GGWCC 3 cut(s) 232, 581, 656
XapI RAATTY 1 cut(s) 1181
XceI RCATGY 2 cut(s) 449, 1085
XcmI CCANNNNNNNNNTGG 1 cut(s) 524
XhoI CTCGAG 1 cut(s) 394
XmiI GTMKAC 2 cut(s) 27, 1307
XmnI GAANNNNTTC 1 cut(s) 1211
XspI CTAG 2 cut(s) 321, 861
ZrmI AGTACT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.