pycom10g18460

YTH domain-containing family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0006572
Physical Location & Seq
Reverse (-)
21737105 .. 21740168
3064 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g18460.1

Sequence Viewer

Length: 1680 bp
ATGGCTGCTGCTGCTGCACCTCAAATTCATCACAACTCTCTTGGAAAAGAGGAGGAAGAAGAGAAAGATTCAAACCCACATGTCCAATCCACAGAATTCTTCAATTCCAATCCGGCTCACAGCAAGGATGGGAGCCCATCTGATACAGCATCATGTATATCGACCGTGGGAGATACAAATGCCAGTGTAAGAAAAAGTGATGCAGATGCAGATTATGAATCCCTGACTTCCTATCCGCCAACTGCATATTACGGATACACATATCCAGGTTATGAAATGGAAAACAATGGATACTATGTCGGTGGAACCGGGATGGAGATGCAATATCCAGTCATGCAAGCAGATAATGGATCTTTTGTCTACTTGATGCCAGGATTTCAGCCTGGTTATGATCCCTACTCACCATACATGCCCATTTCTCCAATCGGTAGTGATGGGAAATATGTTGGTCAACAGATGTATCCCTCCCTGAGCCCTGTGTACCAAGCTCCTATGTCCCCCGGATATAACCCTTCTCTTCTTCCTTATGGGGAGTTCGTCCAATCACCCTACTTGTGGGATCCATCTCTTGTTGTTGGAGATGGAACAGTCGGAAGTCCCCACAATGCAGTCTTAGAAACACCGCACTATAAACCTAATTTCTCTTCCCCTAGTCACACTCGTGCTCCACTCTCTAAATCTCCCAAGCCGTTGGATGTTTCATCAGGTTATGGTGCACAAAATCAGTCAAAACCAGCAAACAAGGCCTCGCTGCGTCCCCCAAGTCTTCAAACAGAAGCACTAGCGAAAGGTTACTTTCCGGTATCAAAGGTTCCGGTCTATAACCAAGGGGCAGGTGGACTGCTCTATCCAAACAATTCTCCGACTTTACAACCAAATGCAAGGGGCTGGGGTGGCTCTGACAAGTTGAAACCAAGAAGTAAGGCTAATGGCGTTAAGGATATTAATCTATTTAATGAGAAGAACCATGGCCCCAGAACAACCAATCCTAAAGGTGCATTGGTGCCTGGAGCTGAGAAGGAGAATGAAAAATCTGATGGCATAGCCTCTGTCATCAGGAAGGATCAATATAACCTCCCCGACTTTCCAACCAAATACAAGCAAGCACTTTTCTTTGTCATCAAATCTTACAGTGAAGATGATATTCATAAAAGCATCAAATACAATGTGTGGGCTAGTACTCCCAATGGAAATAAGAGGTTGGATAGTGCATATCAAGATGCACAAGAGAAGATGGCACAGAAGGGCTACAAGTGTCCCATCTTCCTCTTCTTTTCGGTTAATGCTAGTGGTCAGTTTTGTGGAGTAGCTGAGATGATTGGTCGTGTCGACTTCAATAAGAACATGGATTTCTGGCAGCAGGATAAGTGGAATGGTTATTTTCCGGTCAAGTGGCATATCATAAAAGATGTCCCAAACCCACAATTACGACATATAATACTTGAGAACAACGAGAACAAGCCCGTGACCAATAGTAGAGACACTCAAGAGGTGAAACTTCTTCAGGGTATCGAAATGCTGAACATTTTAAAAACTCATATGTCAAAGACATCAATACTGGATGACTTTGATTTCTACGAAACCCGCCAGAAAATGATGCAGGAGAAGAGGATCACACAATCTACACCCTACTACGAACTGCAGCAGAAAATGAGTGAGTTAAGTGTCAGTGCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

560

Amino Acids

62.23

Weight (kDa)

6.21

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 371 - 510 3.4e-47 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 824
Acc36I ACCTGC 1 cut(s) 824
AccB1I GGYRCC 1 cut(s) 1003
AccI GTMKAC 2 cut(s) 360, 1329
AciI CCGC 3 cut(s) 236, 623, 1585
AclWI GGATC 6 cut(s) 358, 386, 554, 567, 1071, 1619
AcsI RAATTY 2 cut(s) 24, 95
AcuI CTGAAG 1 cut(s) 1487
AfaI GTAC 2 cut(s) 482, 1180
AfiI CCNNNNNNNGG 1 cut(s) 555
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 5 cut(s) 72, 103, 770, 910, 1336
AjnI CCWGG 4 cut(s) 265, 370, 382, 1006
AleI CACNNNNGTG 1 cut(s) 660
AloI GAACNNNNNNTCC 2 cut(s) 970, 1002
AluBI AGCT 3 cut(s) 488, 1013, 1310
AluI AGCT 3 cut(s) 488, 1013, 1310
Alw21I GWGCWC 2 cut(s) 667, 718
Alw26I GTCTC 1 cut(s) 1473
Alw44I GTGCAC 1 cut(s) 714
AlwI GGATC 6 cut(s) 358, 386, 554, 567, 1071, 1619
AoxI GGCC 2 cut(s) 744, 970
ApaLI GTGCAC 1 cut(s) 714
ApeKI GCWGC 7 cut(s) 5, 8, 11, 14, 751, 1357, 1642
ApoI RAATTY 2 cut(s) 24, 95
AseI ATTAAT 1 cut(s) 945
AspS9I GGNCC 1 cut(s) 971
AsuC2I CCSGG 2 cut(s) 310, 501
AsuHPI GGTGA 3 cut(s) 393, 537, 1504
BaeGI GKGCMC 1 cut(s) 718
BaeI ACNNNNGTAYC 2 cut(s) 443, 476
BamHI GGATCC 1 cut(s) 559
BanI GGYRCC 1 cut(s) 1003
BanII GRGCYC 2 cut(s) 137, 476
BauI CACGAG 1 cut(s) 660
BbsI GAAGAC 1 cut(s) 758
Bbv12I GWGCWC 2 cut(s) 667, 718
BbvI GCAGC 3 cut(s) 738, 1369, 1654
BccI CCATC 9 cut(s) 122, 145, 307, 428, 571, 575, 1031, 1228, 1268
BceAI ACGGC 1 cut(s) 673
BciT130I CCWGG 4 cut(s) 267, 372, 384, 1008
BciVI GTATCC 3 cut(s) 248, 284, 471
BcnI CCSGG 2 cut(s) 310, 501
BcoDI GTCTC 1 cut(s) 1473
BfaI CTAG 4 cut(s) 651, 782, 1176, 1287
BfmI CTRYAG 1 cut(s) 1640
BfuAI ACCTGC 1 cut(s) 824
BfuI GTATCC 3 cut(s) 248, 284, 471
BisI GCNGC 7 cut(s) 6, 9, 12, 15, 752, 1358, 1643
BlsI GCNGC 7 cut(s) 7, 10, 13, 16, 753, 1359, 1644
BmcAI AGTACT 1 cut(s) 1180
Bme1390I CCNGG 6 cut(s) 267, 310, 372, 384, 501, 1008
BmgT120I GGNCC 1 cut(s) 971
BmiI GGNNCC 6 cut(s) 134, 307, 561, 813, 973, 1005
BmrFI CCNGG 6 cut(s) 267, 310, 372, 384, 501, 1008
BmsI GCATC 8 cut(s) 158, 190, 196, 309, 357, 1164, 1210, 1587
BpiI GAAGAC 1 cut(s) 758
BpmI CTGGAG 1 cut(s) 1029
Bpu10I CCTNAGC 1 cut(s) 470
BpuEI CTTGAG 2 cut(s) 1463, 1470
BpuMI CCSGG 2 cut(s) 310, 501
BsaBI GATNNNNATC 1 cut(s) 945
BsaJI CCNNGG 4 cut(s) 165, 499, 826, 967
BsaWI WCCGGW 3 cut(s) 799, 814, 1384
BsaXI ACNNNNNCTCC 2 cut(s) 649, 679
Bsc4I CCNNNNNNNGG 1 cut(s) 555
Bse1I ACTGG 3 cut(s) 183, 329, 1563
Bse8I GATNNNNATC 1 cut(s) 945
BseBI CCWGG 4 cut(s) 267, 372, 384, 1008
BseDI CCNNGG 4 cut(s) 165, 499, 826, 967
BseGI GGATG 4 cut(s) 133, 318, 700, 1567
BseJI GATNNNNATC 1 cut(s) 945
BseLI CCNNNNNNNGG 1 cut(s) 555
BseMII CTCAG 4 cut(s) 461, 1005, 1302, 1665
BseNI ACTGG 3 cut(s) 183, 329, 1563
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 718
BseXI GCAGC 3 cut(s) 738, 1369, 1654
BseYI CCCAGC 1 cut(s) 888
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 2 cut(s) 746, 972
BshNI GGYRCC 1 cut(s) 1003
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 2 cut(s) 667, 718
BsiSI CCGG 6 cut(s) 113, 309, 501, 800, 815, 1385
BslFI GGGAC 5 cut(s) 481, 582, 741, 1242, 1397
BslI CCNNNNNNNGG 1 cut(s) 555
BsmAI GTCTC 1 cut(s) 1473
BsmFI GGGAC 5 cut(s) 481, 582, 741, 1242, 1397
BsnI GGCC 2 cut(s) 746, 972
Bsp1286I GDGCHC 4 cut(s) 137, 476, 667, 718
Bsp143I GATC 5 cut(s) 350, 391, 559, 1063, 1611
Bsp19I CCATGG 1 cut(s) 967
BspACI CCGC 3 cut(s) 236, 623, 1585
BspANI GGCC 2 cut(s) 746, 972
BspCNI CTCAG 4 cut(s) 462, 1006, 1303, 1666
BspLI GGNNCC 6 cut(s) 134, 307, 561, 813, 973, 1005
BspMAI CTGCAG 1 cut(s) 1644
BspMI ACCTGC 1 cut(s) 824
BspPI GGATC 6 cut(s) 358, 386, 554, 567, 1071, 1619
BspT107I GGYRCC 1 cut(s) 1003
BsrI ACTGG 3 cut(s) 183, 329, 1563
BssECI CCNNGG 4 cut(s) 165, 499, 826, 967
BssMI GATC 5 cut(s) 350, 391, 559, 1063, 1611
BssSI CACGAG 1 cut(s) 660
BssT1I CCWWGG 2 cut(s) 826, 967
Bst2BI CACGAG 1 cut(s) 660
Bst2UI CCWGG 4 cut(s) 267, 372, 384, 1008
Bst4CI ACNGT 3 cut(s) 166, 589, 1133
Bst6I CTCTTC 5 cut(s) 54, 522, 649, 1274, 1601
BstC8I GCNNGC 2 cut(s) 339, 1104
BstDEI CTNAG 5 cut(s) 470, 613, 1014, 1311, 1674
BstDSI CCRYGG 2 cut(s) 165, 967
BstF5I GGATG 4 cut(s) 133, 318, 700, 1567
BstKTI GATC 5 cut(s) 353, 394, 562, 1066, 1614
BstMAI GTCTC 1 cut(s) 1473
BstMBI GATC 5 cut(s) 350, 391, 559, 1063, 1611
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 4 cut(s) 11, 14, 743, 894
BstNI CCWGG 4 cut(s) 267, 372, 384, 1008
BstNSI RCATGY 2 cut(s) 83, 412
BstSCI CCNGG 6 cut(s) 265, 308, 370, 382, 499, 1006
BstSFI CTRYAG 1 cut(s) 1640
BstSLI GKGCMC 1 cut(s) 718
BstV1I GCAGC 3 cut(s) 738, 1369, 1654
BstV2I GAAGAC 1 cut(s) 758
BstX2I RGATCY 2 cut(s) 350, 559
BstXI CCANNNNNNTGG 1 cut(s) 691
BstYI RGATCY 2 cut(s) 350, 559
BsuI GTATCC 3 cut(s) 248, 284, 471
BsuRI GGCC 2 cut(s) 746, 972
BtgI CCRYGG 2 cut(s) 165, 967
BtsCI GGATG 4 cut(s) 133, 318, 700, 1567
BtsIMutI CAGTG 3 cut(s) 190, 1138, 1675
BveI ACCTGC 1 cut(s) 824
Cac8I GCNNGC 2 cut(s) 339, 1104
Cfr13I GGNCC 1 cut(s) 971
CseI GACGC 1 cut(s) 743
Csp6I GTAC 2 cut(s) 481, 1179
CviAII CATG 6 cut(s) 80, 153, 334, 409, 968, 1345
CviQI GTAC 2 cut(s) 481, 1179
DdeI CTNAG 5 cut(s) 470, 613, 1014, 1311, 1674
DpnI GATC 5 cut(s) 352, 393, 561, 1065, 1613
DpnII GATC 5 cut(s) 350, 391, 559, 1063, 1611
DraI TTTAAA 1 cut(s) 1530
Eam1104I CTCTTC 5 cut(s) 54, 522, 649, 1274, 1601
EarI CTCTTC 5 cut(s) 54, 522, 649, 1274, 1601
EciI GGCGGA 1 cut(s) 225
Eco130I CCWWGG 2 cut(s) 826, 967
Eco147I AGGCCT 1 cut(s) 746
Eco24I GRGCYC 2 cut(s) 137, 476
Eco57I CTGAAG 1 cut(s) 1487
EcoRI GAATTC 1 cut(s) 95
EcoRII CCWGG 4 cut(s) 265, 370, 382, 1006
EcoT14I CCWWGG 2 cut(s) 826, 967
EcoT38I GRGCYC 2 cut(s) 137, 476
ErhI CCWWGG 2 cut(s) 826, 967
FaeI CATG 6 cut(s) 83, 156, 337, 412, 971, 1348
FaqI GGGAC 5 cut(s) 481, 582, 741, 1242, 1397
FatI CATG 6 cut(s) 79, 152, 333, 408, 967, 1344
FauI CCCGC 1 cut(s) 1592
FauNDI CATATG 1 cut(s) 1539
FblI GTMKAC 2 cut(s) 360, 1329
Fnu4HI GCNGC 7 cut(s) 6, 9, 12, 15, 752, 1358, 1643
FokI GGATG 4 cut(s) 140, 325, 707, 1574
FriOI GRGCYC 2 cut(s) 137, 476
Fsp4HI GCNGC 7 cut(s) 6, 9, 12, 15, 752, 1358, 1643
FspBI CTAG 4 cut(s) 651, 782, 1176, 1287
GluI GCNGC 7 cut(s) 6, 9, 12, 15, 752, 1358, 1643
GsaI CCCAGC 1 cut(s) 892
GsuI CTGGAG 1 cut(s) 1029
HaeIII GGCC 2 cut(s) 746, 972
HapII CCGG 6 cut(s) 113, 309, 501, 800, 815, 1385
HgaI GACGC 1 cut(s) 743
Hin1II CATG 6 cut(s) 83, 156, 337, 412, 971, 1348
HincII GTYRAC 2 cut(s) 452, 1330
HindII GTYRAC 2 cut(s) 452, 1330
HinfI GANTC 2 cut(s) 68, 218
HpaII CCGG 6 cut(s) 113, 309, 501, 800, 815, 1385
HphI GGTGA 3 cut(s) 393, 537, 1504
Hpy166II GTNNAC 6 cut(s) 361, 452, 481, 716, 839, 1330
Hpy188I TCNGA 5 cut(s) 142, 593, 864, 901, 1036
Hpy188III TCNNGA 3 cut(s) 1057, 1217, 1487
Hpy8I GTNNAC 6 cut(s) 361, 452, 481, 716, 839, 1330
HpyAV CCTTC 4 cut(s) 522, 1012, 1054, 1237
HpyCH4III ACNGT 3 cut(s) 166, 589, 1133
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 14, 743, 894
HpyF3I CTNAG 5 cut(s) 470, 613, 1014, 1311, 1674
Hsp92II CATG 6 cut(s) 83, 156, 337, 412, 971, 1348
Kzo9I GATC 5 cut(s) 350, 391, 559, 1063, 1611
LmnI GCTCC 4 cut(s) 132, 493, 670, 1010
Lsp1109I GCAGC 3 cut(s) 738, 1369, 1654
LweI GCATC 8 cut(s) 158, 190, 196, 309, 357, 1164, 1210, 1587
MaeI CTAG 4 cut(s) 651, 782, 1176, 1287
MaeIII GTNAC 3 cut(s) 653, 791, 1465
MalI GATC 5 cut(s) 352, 393, 561, 1065, 1613
MboI GATC 5 cut(s) 350, 391, 559, 1063, 1611
MflI RGATCY 2 cut(s) 350, 559
MhlI GDGCHC 4 cut(s) 137, 476, 667, 718
MluCI AATT 6 cut(s) 24, 95, 103, 637, 856, 1424
MmeI TCCRAC 6 cut(s) 556, 571, 672, 887, 1112, 1182
MseI TTAA 6 cut(s) 936, 945, 954, 1281, 1529, 1661
MslI CAYNNNNRTG 1 cut(s) 660
MspI CCGG 6 cut(s) 113, 309, 501, 800, 815, 1385
MspR9I CCNGG 6 cut(s) 267, 310, 372, 384, 501, 1008
MvaI CCWGG 4 cut(s) 267, 372, 384, 1008
MwoI GCNNNNNNNGC 4 cut(s) 11, 14, 743, 894
NciI CCSGG 2 cut(s) 310, 501
NcoI CCATGG 1 cut(s) 967
NdeI CATATG 1 cut(s) 1539
NdeII GATC 5 cut(s) 350, 391, 559, 1063, 1611
NlaIII CATG 6 cut(s) 83, 156, 337, 412, 971, 1348
NlaIV GGNNCC 6 cut(s) 134, 307, 561, 813, 973, 1005
NmuCI GTSAC 2 cut(s) 653, 1465
NspI RCATGY 2 cut(s) 83, 412
OliI CACNNNNGTG 1 cut(s) 660
PaqCI CACCTGC 1 cut(s) 824
PceI AGGCCT 1 cut(s) 746
PciI ACATGT 1 cut(s) 79
PfeI GAWTC 2 cut(s) 68, 218
PkrI GCNGC 7 cut(s) 7, 10, 13, 16, 753, 1359, 1644
PscI ACATGT 1 cut(s) 79
PshBI ATTAAT 1 cut(s) 945
Psp6I CCWGG 4 cut(s) 265, 370, 382, 1006
PspFI CCCAGC 1 cut(s) 888
PspGI CCWGG 4 cut(s) 265, 370, 382, 1006
PspN4I GGNNCC 6 cut(s) 134, 307, 561, 813, 973, 1005
PspPI GGNCC 1 cut(s) 971
PsrI GAACNNNNNNTAC 2 cut(s) 795, 827
PstI CTGCAG 1 cut(s) 1644
PsuI RGATCY 2 cut(s) 350, 559
RsaI GTAC 2 cut(s) 482, 1180
RsaNI GTAC 2 cut(s) 481, 1179
RseI CAYNNNNRTG 1 cut(s) 660
SalI GTCGAC 1 cut(s) 1328
SaqAI TTAA 6 cut(s) 936, 945, 954, 1281, 1529, 1661
SatI GCNGC 7 cut(s) 6, 9, 12, 15, 752, 1358, 1643
Sau3AI GATC 5 cut(s) 350, 391, 559, 1063, 1611
Sau96I GGNCC 1 cut(s) 971
ScaI AGTACT 1 cut(s) 1180
ScrFI CCNGG 6 cut(s) 267, 310, 372, 384, 501, 1008
SduI GDGCHC 4 cut(s) 137, 476, 667, 718
SfaNI GCATC 8 cut(s) 158, 190, 196, 309, 357, 1164, 1210, 1587
SfcI CTRYAG 1 cut(s) 1640
SmiMI CAYNNNNRTG 1 cut(s) 660
SmlI CTYRAG 2 cut(s) 1442, 1485
SmoI CTYRAG 2 cut(s) 1442, 1485
Sse9I AATT 6 cut(s) 24, 95, 103, 637, 856, 1424
SseBI AGGCCT 1 cut(s) 746
SsiI CCGC 3 cut(s) 236, 623, 1585
SspMI CTAG 4 cut(s) 651, 782, 1176, 1287
StuI AGGCCT 1 cut(s) 746
StyD4I CCNGG 6 cut(s) 265, 308, 370, 382, 499, 1006
StyI CCWWGG 2 cut(s) 826, 967
TaaI ACNGT 3 cut(s) 166, 589, 1133
TaqI TCGA 3 cut(s) 161, 1329, 1512
TasI AATT 6 cut(s) 24, 95, 103, 637, 856, 1424
TatI WGTACW 1 cut(s) 1178
TfiI GAWTC 2 cut(s) 68, 218
Tru1I TTAA 6 cut(s) 936, 945, 954, 1281, 1529, 1661
Tru9I TTAA 6 cut(s) 936, 945, 954, 1281, 1529, 1661
TscAI CASTG 3 cut(s) 190, 1138, 1675
TseFI GTSAC 2 cut(s) 653, 1465
TseI GCWGC 7 cut(s) 5, 8, 11, 14, 751, 1357, 1642
Tsp45I GTSAC 2 cut(s) 653, 1465
TspDTI ATGAA 6 cut(s) 17, 231, 288, 690, 1041, 1136
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 3 cut(s) 190, 1138, 1675
VneI GTGCAC 1 cut(s) 714
VspI ATTAAT 1 cut(s) 945
XapI RAATTY 2 cut(s) 24, 95
XceI RCATGY 2 cut(s) 83, 412
XcmI CCANNNNNNNNNTGG 1 cut(s) 833
XmiI GTMKAC 2 cut(s) 360, 1329
XspI CTAG 4 cut(s) 651, 782, 1176, 1287
ZrmI AGTACT 1 cut(s) 1180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.