FvH4_3g13840

YTH domain-containing family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006572
Physical Location & Seq
Forward (+)
8289863 .. 8294236
4374 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13840.t4

Sequence Viewer

Length: 1725 bp
ATGGCTGCTCCTCAATTTGAACAACACAATCCTCATCCTCATCAGACAACTCCCAAACAAGAAGAAGGGAAAGAAAAGGAAGCAAAACCAGATATTCAATCCACAGAGTCCTTCCAATCCAATCTGGCTCTTAGCAAGGATGGAAGCTCATCTGATGCAGCATCATGTATATCAACTGCAGGAGATACAACTGCTAGTGTGAAAAAAGGTGATGCAGATGTAGATGCAGATTATGAATCCATGGCTTCCTATCCAACCACCGCCTATTATGGATACAGCTATCCAGGTAGTTATGATATGGAAAACCAAGGATACTATGTCGGTGGAAATACTGGGATGGAAGCTCAATACCCTGTCATGCAAGCAGATAATGGCTCTTTTGTCTACTTGATGCCAGGATTTCAGCCTGGCTATGATCCTTACATGCAGTACCTGCCCATGACTACAATCAGTAGTGATGGACAATATGTTGGTCAACAGATGTATTCATCGATCAGCCCCATATACCAATCTCCAATCAACTCCCCTGGATATAATATTCCCTCTCCTCTTCCTTATGGGGAGTTAAGTCCAACACCCTACTTGTGGGACCCATCTCTTGTCGGAGATGGAACATATGGAAATGGCTACAATGGAGTTTTAGAAACACCGAATTCTAAATCTAATTTCTCATCCCCTAGTCACACTCGTGCTCCATTCTCTAAATCTGATACACCACCTTCAGGCAACACTCCTTTAGAGACTAAGAACTTGGGTTATGGTGCACGAAATCAGCCAAAACCAGTGAACAAGACATCACTGCATGCTCCGGCTGTCCAATCGGAAGCAGCAGCGAAAGGTTACTATTCTGTTGCAAAGATCCCAGTCTATAACCAAGGGACAAGTGGTTTGCTGTATCCAAACAACTCGTTAAAAGCAAATCCAAAGAGTTGGGGTGGTCCTGAGAAGGTGAAAACAAGAAGCAAGGCTAATAGTGTCAGAGATATCAATTTGTTTAGCGAGAAAAACCACGGTCCCAGAACAACCAATCCTAAGGGCACCATAGTCTCCGCAGCTGACAAGGAGAATGAAAAATGTGACGGCACAAATTCTATTATCAGGAAGGATCAATATAACCTTCCTGACTTTCCGACCAAATATGAGCAGGCACTGTTCTTTGTCATCAAATCTTACAGTGAAGATGATATTCATAAGAGCATCAAGTATAATGTATGGGCTAGTACTCCTAATGGCAATAGGAGGCTGGACAATGCTTATCAAGATGCACAAGAGAAGGCGGCACATAAAGGCTGCAAATGTCCTGTGTTCCTCTTCTTTTCGGTTAATGCAAGCGGTCAGTTCTGTGGAGTAGCTGAAATGGTTGGCCGTGTTGATTTTAATAAGAACATGGAATTCTGGCAACAGGATAAGTGGAATGGTTATTTCCCAGTCAAGTGGCATATCATAAAAGATGTTCCAAATCCCCAGTTACGACATATAATACTTGAGAATAATGAAAACAAGCCTGTGACCAATAGTCGAGACACGCAAGAGGTTAAATTCCTTCAGGGTGTTGAAATGTTGAACATTTTCAAAAATCATTTGTCAAAGACATCGATATTGGATGACTTTGATTTCTATGAAAGCCGTCAGAAAGTGATGCAAGAGAAGAGGATCAGGCAGTCCACTCCTTACTACGATATGCAGCATAAAATAGAAGAATTAACAATCACTGTCCCGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

575

Amino Acids

64.07

Weight (kDa)

6.0

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 305 - 445 2.3e-48 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 441
AccB1I GGYRCC 1 cut(s) 1037
AccI GTMKAC 1 cut(s) 384
AciI CCGC 4 cut(s) 261, 1050, 1277, 1332
AclWI GGATC 4 cut(s) 410, 853, 1113, 1661
AcoI YGGCCR 1 cut(s) 1363
AcsI RAATTY 4 cut(s) 652, 1087, 1391, 1538
AcuI CTGAAG 2 cut(s) 705, 1529
AfaI GTAC 2 cut(s) 431, 1222
AfiI CCNNNNNNNGG 2 cut(s) 585, 722
AgsI TTSAA 5 cut(s) 20, 98, 1556, 1564, 1573
AhdI GACNNNNNGTC 1 cut(s) 1515
AjnI CCWGG 4 cut(s) 283, 394, 406, 526
AleI CACNNNNGTG 1 cut(s) 687
AloI GAACNNNNNNTCC 2 cut(s) 1012, 1044
AluBI AGCT 5 cut(s) 147, 279, 344, 1055, 1352
AluI AGCT 5 cut(s) 147, 279, 344, 1055, 1352
Alw21I GWGCWC 2 cut(s) 694, 766
Alw26I GTCTC 3 cut(s) 734, 1051, 1515
Alw44I GTGCAC 1 cut(s) 762
AlwI GGATC 4 cut(s) 410, 853, 1113, 1661
AlwNI CAGNNNCTG 2 cut(s) 433, 1150
AoxI GGCC 1 cut(s) 1363
ApaLI GTGCAC 1 cut(s) 762
ApeKI GCWGC 7 cut(s) 5, 158, 827, 830, 1052, 1290, 1684
ApoI RAATTY 4 cut(s) 652, 1087, 1391, 1538
ArsI GACNNNNNNTTYG 2 cut(s) 871, 903
Asp700I GAANNNNTTC 1 cut(s) 1568
AspS9I GGNCC 3 cut(s) 589, 938, 1013
AsuC2I CCSGG 1 cut(s) 1718
AsuHPI GGTGA 2 cut(s) 221, 961
AvaII GGWCC 3 cut(s) 589, 938, 1013
AxyI CCTNAGG 1 cut(s) 1032
BaeGI GKGCMC 2 cut(s) 766, 1040
BanI GGYRCC 1 cut(s) 1037
BauI CACGAG 1 cut(s) 687
Bbv12I GWGCWC 2 cut(s) 694, 766
BbvI GCAGC 6 cut(s) 170, 839, 842, 1064, 1277, 1696
BccI CCATC 5 cut(s) 134, 331, 452, 601, 602
BceAI ACGGC 3 cut(s) 1096, 1350, 1611
BciT130I CCWGG 4 cut(s) 285, 396, 408, 528
BciVI GTATCC 3 cut(s) 266, 305, 906
BcnI CCSGG 1 cut(s) 1718
BcoDI GTCTC 3 cut(s) 734, 1051, 1515
BfaI CTAG 3 cut(s) 195, 678, 1218
BfmI CTRYAG 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 441
BfuI GTATCC 3 cut(s) 266, 305, 906
BisI GCNGC 8 cut(s) 6, 159, 828, 831, 1053, 1278, 1291, 1685
BlsI GCNGC 8 cut(s) 7, 160, 829, 832, 1054, 1279, 1292, 1686
BmcAI AGTACT 1 cut(s) 1222
Bme1390I CCNGG 5 cut(s) 285, 396, 408, 528, 1718
Bme18I GGWCC 3 cut(s) 589, 938, 1013
BmeRI GACNNNNNGTC 1 cut(s) 1515
BmgT120I GGNCC 3 cut(s) 589, 938, 1013
BmiI GGNNCC 4 cut(s) 590, 591, 1015, 1039
BmrFI CCNGG 5 cut(s) 285, 396, 408, 528, 1718
BmrI ACTGGG 4 cut(s) 342, 857, 1421, 1459
BmsI GCATC 8 cut(s) 145, 170, 202, 214, 381, 1206, 1252, 1629
BmuI ACTGGG 4 cut(s) 342, 857, 1421, 1459
BpuEI CTTGAG 1 cut(s) 1505
BpuMI CCSGG 1 cut(s) 1718
Bsa29I ATCGAT 2 cut(s) 491, 1595
BsaJI CCNNGG 5 cut(s) 240, 307, 526, 874, 1009
BsaXI ACNNNNNCTCC 2 cut(s) 676, 706
Bsc4I CCNNNNNNNGG 2 cut(s) 585, 722
Bse1I ACTGG 5 cut(s) 337, 782, 863, 1427, 1465
Bse21I CCTNAGG 1 cut(s) 1032
BseBI CCWGG 4 cut(s) 285, 396, 408, 528
BseCI ATCGAT 2 cut(s) 491, 1595
BseDI CCNNGG 5 cut(s) 240, 307, 526, 874, 1009
BseGI GGATG 5 cut(s) 34, 145, 342, 671, 1609
BseLI CCNNNNNNNGG 2 cut(s) 585, 722
BseMII CTCAG 1 cut(s) 933
BseNI ACTGG 5 cut(s) 337, 782, 863, 1427, 1465
BseRI GAGGAG 1 cut(s) 537
BseSI GKGCMC 2 cut(s) 766, 1040
BseXI GCAGC 6 cut(s) 170, 839, 842, 1064, 1277, 1696
BshFI GGCC 1 cut(s) 1365
BshNI GGYRCC 1 cut(s) 1037
BshVI ATCGAT 2 cut(s) 491, 1595
BsiHKAI GWGCWC 2 cut(s) 694, 766
BsiSI CCGG 2 cut(s) 809, 1718
BslFI GGGAC 4 cut(s) 602, 892, 999, 1700
BslI CCNNNNNNNGG 2 cut(s) 585, 722
BsmAI GTCTC 3 cut(s) 734, 1051, 1515
BsmFI GGGAC 4 cut(s) 602, 892, 999, 1700
BsnI GGCC 1 cut(s) 1365
Bsp1286I GDGCHC 3 cut(s) 694, 766, 1040
Bsp143I GATC 5 cut(s) 415, 492, 858, 1105, 1653
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 4 cut(s) 261, 1050, 1277, 1332
BspANI GGCC 1 cut(s) 1365
BspCNI CTCAG 1 cut(s) 934
BspDI ATCGAT 2 cut(s) 491, 1595
BspLI GGNNCC 4 cut(s) 590, 591, 1015, 1039
BspMAI CTGCAG 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 441
BspPI GGATC 4 cut(s) 410, 853, 1113, 1661
BspT107I GGYRCC 1 cut(s) 1037
BsrI ACTGG 5 cut(s) 337, 782, 863, 1427, 1465
BssECI CCNNGG 5 cut(s) 240, 307, 526, 874, 1009
BssMI GATC 5 cut(s) 415, 492, 858, 1105, 1653
BssSI CACGAG 1 cut(s) 687
BssT1I CCWWGG 3 cut(s) 240, 307, 874
Bst2BI CACGAG 1 cut(s) 687
Bst2UI CCWGG 4 cut(s) 285, 396, 408, 528
Bst4CI ACNGT 4 cut(s) 1013, 1152, 1175, 1714
Bst6I CTCTTC 3 cut(s) 555, 1316, 1643
BstAPI GCANNNNNTGC 1 cut(s) 433
BstC8I GCNNGC 4 cut(s) 363, 804, 1146, 1330
BstDEI CTNAG 4 cut(s) 131, 744, 942, 1032
BstDSI CCRYGG 2 cut(s) 240, 1009
BstF5I GGATG 5 cut(s) 34, 145, 342, 671, 1609
BstKTI GATC 5 cut(s) 418, 495, 861, 1108, 1656
BstMAI GTCTC 3 cut(s) 734, 1051, 1515
BstMBI GATC 5 cut(s) 415, 492, 858, 1105, 1653
BstMWI GCNNNNNNNGC 1 cut(s) 433
BstNI CCWGG 4 cut(s) 285, 396, 408, 528
BstNSI RCATGY 2 cut(s) 427, 806
BstSCI CCNGG 5 cut(s) 283, 394, 406, 526, 1716
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 2 cut(s) 766, 1040
BstV1I GCAGC 6 cut(s) 170, 839, 842, 1064, 1277, 1696
BstX2I RGATCY 1 cut(s) 858
BstXI CCANNNNNNTGG 2 cut(s) 930, 1434
BstYI RGATCY 1 cut(s) 858
Bsu15I ATCGAT 2 cut(s) 491, 1595
Bsu36I CCTNAGG 1 cut(s) 1032
BsuI GTATCC 3 cut(s) 266, 305, 906
BsuRI GGCC 1 cut(s) 1365
BsuTUI ATCGAT 2 cut(s) 491, 1595
BtgI CCRYGG 2 cut(s) 240, 1009
BtsCI GGATG 5 cut(s) 34, 145, 342, 671, 1609
BtsI GCAGTG 1 cut(s) 797
BtsIMutI CAGTG 5 cut(s) 789, 797, 1148, 1180, 1710
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 4 cut(s) 363, 804, 1146, 1330
CaiI CAGNNNCTG 2 cut(s) 433, 1150
Cfr13I GGNCC 3 cut(s) 589, 938, 1013
ClaI ATCGAT 2 cut(s) 491, 1595
Csp6I GTAC 2 cut(s) 430, 1221
CviAII CATG 7 cut(s) 165, 241, 358, 424, 439, 803, 1387
CviQI GTAC 2 cut(s) 430, 1221
DdeI CTNAG 4 cut(s) 131, 744, 942, 1032
DpnI GATC 5 cut(s) 417, 494, 860, 1107, 1655
DpnII GATC 5 cut(s) 415, 492, 858, 1105, 1653
DriI GACNNNNNGTC 1 cut(s) 1515
EaeI YGGCCR 1 cut(s) 1363
Eam1104I CTCTTC 3 cut(s) 555, 1316, 1643
Eam1105I GACNNNNNGTC 1 cut(s) 1515
EarI CTCTTC 3 cut(s) 555, 1316, 1643
Eco130I CCWWGG 3 cut(s) 240, 307, 874
Eco32I GATATC 1 cut(s) 985
Eco47I GGWCC 3 cut(s) 589, 938, 1013
Eco57I CTGAAG 2 cut(s) 705, 1529
Eco81I CCTNAGG 1 cut(s) 1032
EcoO109I RGGNCCY 1 cut(s) 589
EcoRI GAATTC 2 cut(s) 652, 1391
EcoRII CCWGG 4 cut(s) 283, 394, 406, 526
EcoRV GATATC 1 cut(s) 985
EcoT14I CCWWGG 3 cut(s) 240, 307, 874
ErhI CCWWGG 3 cut(s) 240, 307, 874
FaeI CATG 7 cut(s) 168, 244, 361, 427, 442, 806, 1390
FaqI GGGAC 4 cut(s) 602, 892, 999, 1700
FatI CATG 7 cut(s) 164, 240, 357, 423, 438, 802, 1386
FauNDI CATATG 1 cut(s) 616
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 8 cut(s) 6, 159, 828, 831, 1053, 1278, 1291, 1685
FokI GGATG 5 cut(s) 21, 152, 349, 658, 1616
Fsp4HI GCNGC 8 cut(s) 6, 159, 828, 831, 1053, 1278, 1291, 1685
FspBI CTAG 3 cut(s) 195, 678, 1218
GluI GCNGC 8 cut(s) 6, 159, 828, 831, 1053, 1278, 1291, 1685
HaeIII GGCC 1 cut(s) 1365
HapII CCGG 2 cut(s) 809, 1718
Hin1II CATG 7 cut(s) 168, 244, 361, 427, 442, 806, 1390
HincII GTYRAC 1 cut(s) 476
HindII GTYRAC 1 cut(s) 476
HinfI GANTC 2 cut(s) 107, 236
HpaII CCGG 2 cut(s) 809, 1718
HphI GGTGA 2 cut(s) 221, 961
Hpy166II GTNNAC 5 cut(s) 385, 476, 764, 787, 1665
Hpy188I TCNGA 8 cut(s) 45, 154, 605, 709, 823, 980, 1131, 1632
Hpy188III TCNNGA 5 cut(s) 941, 1099, 1121, 1259, 1520
Hpy8I GTNNAC 5 cut(s) 385, 476, 764, 787, 1665
HpyAV CCTTC 8 cut(s) 59, 121, 729, 940, 1096, 1127, 1267, 1553
HpyCH4III ACNGT 4 cut(s) 1013, 1152, 1175, 1714
HpyF10VI GCNNNNNNNGC 1 cut(s) 433
HpyF3I CTNAG 4 cut(s) 131, 744, 942, 1032
Hsp92II CATG 7 cut(s) 168, 244, 361, 427, 442, 806, 1390
KflI GGGWCCC 1 cut(s) 589
Kzo9I GATC 5 cut(s) 415, 492, 858, 1105, 1653
LmnI GCTCC 3 cut(s) 13, 697, 811
Lsp1109I GCAGC 6 cut(s) 170, 839, 842, 1064, 1277, 1696
LweI GCATC 8 cut(s) 145, 170, 202, 214, 381, 1206, 1252, 1629
MaeI CTAG 3 cut(s) 195, 678, 1218
MaeIII GTNAC 5 cut(s) 680, 839, 1076, 1467, 1507
MalI GATC 5 cut(s) 417, 494, 860, 1107, 1655
MboI GATC 5 cut(s) 415, 492, 858, 1105, 1653
MboII GAAGA 6 cut(s) 74, 542, 1190, 1303, 1660, 1709
MflI RGATCY 1 cut(s) 858
MhlI GDGCHC 3 cut(s) 694, 766, 1040
MluCI AATT 8 cut(s) 14, 652, 664, 988, 1087, 1391, 1538, 1700
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 4 cut(s) 278, 583, 596, 1154
MnlI CCTC 9 cut(s) 21, 42, 48, 553, 558, 1233, 1319, 1525, 1644
MroXI GAANNNNTTC 1 cut(s) 1568
MseI TTAA 6 cut(s) 566, 911, 1323, 1377, 1536, 1703
MslI CAYNNNNRTG 1 cut(s) 687
MspA1I CMGCKG 1 cut(s) 1055
MspI CCGG 2 cut(s) 809, 1718
MspR9I CCNGG 5 cut(s) 285, 396, 408, 528, 1718
MvaI CCWGG 4 cut(s) 285, 396, 408, 528
MwoI GCNNNNNNNGC 1 cut(s) 433
NciI CCSGG 1 cut(s) 1718
NcoI CCATGG 1 cut(s) 240
NdeI CATATG 1 cut(s) 616
NdeII GATC 5 cut(s) 415, 492, 858, 1105, 1653
NlaIII CATG 7 cut(s) 168, 244, 361, 427, 442, 806, 1390
NlaIV GGNNCC 4 cut(s) 590, 591, 1015, 1039
NmuCI GTSAC 3 cut(s) 680, 1076, 1507
NspI RCATGY 2 cut(s) 427, 806
OliI CACNNNNGTG 1 cut(s) 687
PaeI GCATGC 1 cut(s) 806
PdmI GAANNNNTTC 1 cut(s) 1568
PfeI GAWTC 1 cut(s) 236
PfoI TCCNGGA 1 cut(s) 1716
PkrI GCNGC 8 cut(s) 7, 160, 829, 832, 1054, 1279, 1292, 1686
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 589
Psp5II RGGWCCY 1 cut(s) 589
Psp6I CCWGG 4 cut(s) 283, 394, 406, 526
PspGI CCWGG 4 cut(s) 283, 394, 406, 526
PspN4I GGNNCC 4 cut(s) 590, 591, 1015, 1039
PspPI GGNCC 3 cut(s) 589, 938, 1013
PspPPI RGGWCCY 1 cut(s) 589
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 2 cut(s) 433, 1150
PsuI RGATCY 1 cut(s) 858
PvuII CAGCTG 1 cut(s) 1055
RsaI GTAC 2 cut(s) 431, 1222
RsaNI GTAC 2 cut(s) 430, 1221
RseI CAYNNNNRTG 1 cut(s) 687
SaqAI TTAA 6 cut(s) 566, 911, 1323, 1377, 1536, 1703
SatI GCNGC 8 cut(s) 6, 159, 828, 831, 1053, 1278, 1291, 1685
Sau3AI GATC 5 cut(s) 415, 492, 858, 1105, 1653
Sau96I GGNCC 3 cut(s) 589, 938, 1013
ScaI AGTACT 1 cut(s) 1222
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 5 cut(s) 285, 396, 408, 528, 1718
SduI GDGCHC 3 cut(s) 694, 766, 1040
SfaNI GCATC 8 cut(s) 145, 170, 202, 214, 381, 1206, 1252, 1629
SfcI CTRYAG 1 cut(s) 177
SinI GGWCC 3 cut(s) 589, 938, 1013
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 1 cut(s) 1484
SmoI CTYRAG 1 cut(s) 1484
SphI GCATGC 1 cut(s) 806
Sse9I AATT 8 cut(s) 14, 652, 664, 988, 1087, 1391, 1538, 1700
SsiI CCGC 4 cut(s) 261, 1050, 1277, 1332
SspI AATATT 1 cut(s) 538
SspMI CTAG 3 cut(s) 195, 678, 1218
StyD4I CCNGG 5 cut(s) 283, 394, 406, 526, 1716
StyI CCWWGG 3 cut(s) 240, 307, 874
TaaI ACNGT 4 cut(s) 1013, 1152, 1175, 1714
TaqI TCGA 3 cut(s) 491, 1519, 1595
TasI AATT 8 cut(s) 14, 652, 664, 988, 1087, 1391, 1538, 1700
TatI WGTACW 1 cut(s) 1220
TauI GCSGC 1 cut(s) 1280
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 6 cut(s) 566, 911, 1323, 1377, 1536, 1703
Tru9I TTAA 6 cut(s) 566, 911, 1323, 1377, 1536, 1703
TscAI CASTG 5 cut(s) 789, 804, 1155, 1180, 1717
TseFI GTSAC 3 cut(s) 680, 1076, 1507
TseI GCWGC 7 cut(s) 5, 158, 827, 830, 1052, 1290, 1684
Tsp45I GTSAC 3 cut(s) 680, 1076, 1507
TspDTI ATGAA 6 cut(s) 249, 477, 1083, 1178, 1509, 1635
TspRI CASTG 5 cut(s) 789, 804, 1155, 1180, 1717
VneI GTGCAC 1 cut(s) 762
VpaK11BI GGWCC 3 cut(s) 589, 938, 1013
XapI RAATTY 4 cut(s) 652, 1087, 1391, 1538
XceI RCATGY 2 cut(s) 427, 806
XcmI CCANNNNNNNNNTGG 1 cut(s) 881
XmiI GTMKAC 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 1568
XspI CTAG 3 cut(s) 195, 678, 1218
ZrmI AGTACT 1 cut(s) 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.