Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8478305.1

Orthogroup ID

OG0006572

Physical Location & Seq

Genomic Coordinates Forward (+)

34 .. 1625

Gene Structure 1592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8478305.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

atgactaccatcagtagtgatggacaatatgtcggtcaacagatgtattcaccgatcagccccatataccaatctccaatcaattcccctggatataatatcccctctcctcatccttatggggagttagtcccaacaccctacttgtgggacccatctcttattgcagatggaacatatggaaatggctacaatggagttttagaaacaccgacttctaaatctaatttctcatcccctagttacactcgtgctccgttctctaaatcttttacaccaccttcaggcaacgctcctttagagactaagagctcaagttatggtgcacgaaatcagccaaaaccagtgaataaggcctcactgcatgctccgactcttcaatcagaagcagcagccaaagggtactattctgttgcaaagtttcctgtctataaccaagggacaggtggtttgctctatccaaacaattcgttaaaagcaaatccaaagagttggggtggtcctgagaagttgaaaacaagaagcaaggctaatagtgttagagatatcaatttgttcagtgagaagaaccatggtcccagaacaaccaatcctaaaggcgccttggtctccctcgctgacaaggagaatggaaaatgtgacagcacaaaatctattatcaggaaggatcaatataaccttcctgactttccaaccaaatatgagcaggcacttttctttgttatcaaatcctacagtgaagacgatattcataagagcattaagtacaatgtatgggctagtactcctaatgggaataggaggctggacaatgcttatcaagatgcacaagagaatgcggcacagaaaggctgcaaatctcctttgttcctcttcttttcggttaatgcaagtggtcagttctgtggagtagctgagatggttggccgtgttgattttaataagaacatggatttctggcaacaggataagtggaatggttatttcccagtcaagtggcatgtcataaaagatgttccaaatcctcagttacgacatataatacttgagaataatgaaaacaagcctgtgaccaatagtcgagacactcaagaggtcaaattccttcagggtatcgaaatgttgaacattttcaaaaattattcgtcaaagacatcaatattggacgactttgatttctatgaaaaccgtcagaaagtgatgcaagagaagagggtcaggcagtctacgccttactatgatttgcaggtttgctactgctcttcttctttacttcaatctttacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

429

Amino Acids

48.23

Weight (kDa)

9.08

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79270 AT1G79270 AT1G79270 AT1G79270
fragaria_vesca	FvH4_3g13840 FvH4_3g13840 FvH4_3g13840 FvH4_3g13840
malus_domestica	MD05G1240700.v1.1 MD10G1219100.v1.1
prunus_persica	Prupe.4G124900_v2.0.a1 Prupe.4G124900_v2.0.a1
pyrus_communis	pycom05g21690 pycom10g18460
rosa_chinensis	RchiOBHm_Chr5g0023021
rosa_laevigata	RLG00000032691
rosa_multiflora	Rmu_co8478305.1_g000001 Rmu_sc0002675.1_g000016 Rmu_sc0003441.1_g000099
rosa_roxburghii	Rroxscaffold_1G00056290
rosa_rugosa	Rorug05G0076600
rosa_samantha	Rh5AG162900 Rh5BG162100 Rh5CG176800 Rh5DG163400
rosa_wichuraiana	Rw5G014690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1237
AccB1I	GGYRCC	1 cut(s)	599
AccI	GTMKAC	1 cut(s)	1226
AciI	CCGC	1 cut(s)	839
AclWI	GGATC	1 cut(s)	675
AcoI	YGGCCR	1 cut(s)	925
AcsI	RAATTY	1 cut(s)	1100
AcuI	CTGAAG	2 cut(s)	267, 1091
AcyI	GRCGYC	1 cut(s)	600
AfaI	GTAC	3 cut(s)	404, 767, 784
AfiI	CCNNNNNNNGG	2 cut(s)	147, 284
AgsI	TTSAA	5 cut(s)	380, 514, 1126, 1135, 1277
AhdI	GACNNNNNGTC	2 cut(s)	29, 1077
AjnI	CCWGG	1 cut(s)	88
AloI	GAACNNNNNNTCC	2 cut(s)	574, 606
AluBI	AGCT	2 cut(s)	312, 914
AluI	AGCT	2 cut(s)	312, 914
Alw21I	GWGCWC	3 cut(s)	256, 314, 328
Alw26I	GTCTC	3 cut(s)	296, 613, 1077
Alw44I	GTGCAC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	675
AoxI	GGCC	2 cut(s)	354, 925
ApaLI	GTGCAC	1 cut(s)	324
ApeKI	GCWGC	3 cut(s)	389, 392, 852
ApoI	RAATTY	1 cut(s)	1100
ArsI	GACNNNNNNTTYG	2 cut(s)	433, 465
Asp700I	GAANNNNTTC	1 cut(s)	1130
AspLEI	GCGC	1 cut(s)	602
AspS9I	GGNCC	3 cut(s)	151, 500, 575
AsuHPI	GGTGA	1 cut(s)	42
AvaII	GGWCC	3 cut(s)	151, 500, 575
BaeGI	GKGCMC	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	314
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	747
Bbv12I	GWGCWC	3 cut(s)	256, 314, 328
BbvI	GCAGC	3 cut(s)	401, 404, 839
BccI	CCATC	5 cut(s)	14, 17, 163, 164, 913
BceAI	ACGGC	1 cut(s)	912
BciT130I	CCWGG	1 cut(s)	90
BcoDI	GTCTC	3 cut(s)	296, 613, 1077
BfaI	CTAG	2 cut(s)	240, 780
BfmI	CTRYAG	1 cut(s)	733
BfoI	RGCGCY	1 cut(s)	603
BfuAI	ACCTGC	1 cut(s)	1237
BisI	GCNGC	4 cut(s)	390, 393, 840, 853
BlsI	GCNGC	4 cut(s)	391, 394, 841, 854
BmcAI	AGTACT	1 cut(s)	784
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	3 cut(s)	151, 500, 575
BmeRI	GACNNNNNGTC	2 cut(s)	29, 1077
BmgT120I	GGNCC	3 cut(s)	151, 500, 575
BmiI	GGNNCC	4 cut(s)	152, 153, 577, 601
BmrFI	CCNGG	1 cut(s)	90
BmrI	ACTGGG	1 cut(s)	983
BmsI	GCATC	2 cut(s)	814, 1191
BmuI	ACTGGG	1 cut(s)	983
BpiI	GAAGAC	1 cut(s)	747
BpuEI	CTTGAG	3 cut(s)	298, 1067, 1074
BsaHI	GRCGYC	1 cut(s)	600
BsaI	GGTCTC	1 cut(s)	613
BsaJI	CCNNGG	4 cut(s)	88, 436, 571, 603
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 284
Bse1I	ACTGG	2 cut(s)	344, 989
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	4 cut(s)	88, 436, 571, 603
BseGI	GGATG	2 cut(s)	112, 233
BseLI	CCNNNNNNNGG	2 cut(s)	147, 284
BseMII	CTCAG	3 cut(s)	495, 906, 1040
BseNI	ACTGG	2 cut(s)	344, 989
BseRI	GAGGAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	3 cut(s)	401, 404, 839
BshFI	GGCC	2 cut(s)	356, 927
BshNI	GGYRCC	1 cut(s)	599
BsiHKAI	GWGCWC	3 cut(s)	256, 314, 328
BslFI	GGGAC	4 cut(s)	116, 164, 454, 561
BslI	CCNNNNNNNGG	2 cut(s)	147, 284
BsmAI	GTCTC	3 cut(s)	296, 613, 1077
BsmFI	GGGAC	4 cut(s)	116, 164, 454, 561
BsmI	GAATGC	1 cut(s)	841
BsnI	GGCC	2 cut(s)	356, 927
Bso31I	GGTCTC	1 cut(s)	613
Bsp1286I	GDGCHC	3 cut(s)	256, 314, 328
Bsp143I	GATC	2 cut(s)	54, 667
Bsp19I	CCATGG	1 cut(s)	571
BspACI	CCGC	1 cut(s)	839
BspANI	GGCC	2 cut(s)	356, 927
BspCNI	CTCAG	3 cut(s)	496, 907, 1039
BspLI	GGNNCC	4 cut(s)	152, 153, 577, 601
BspMI	ACCTGC	1 cut(s)	1237
BspPI	GGATC	1 cut(s)	675
BspQI	GCTCTTC	1 cut(s)	1267
BspT107I	GGYRCC	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	344, 989
BssECI	CCNNGG	4 cut(s)	88, 436, 571, 603
BssMI	GATC	2 cut(s)	54, 667
BssNI	GRCGYC	1 cut(s)	600
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	3 cut(s)	436, 571, 603
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	3 cut(s)	737, 1190, 1287
Bst6I	CTCTTC	4 cut(s)	381, 878, 1205, 1267
BstACI	GRCGYC	1 cut(s)	600
BstC8I	GCNNGC	2 cut(s)	366, 708
BstDEI	CTNAG	4 cut(s)	306, 504, 915, 1026
BstDSI	CCRYGG	1 cut(s)	571
BstF5I	GGATG	2 cut(s)	112, 233
BstH2I	RGCGCY	1 cut(s)	603
BstHHI	GCGC	1 cut(s)	602
BstKTI	GATC	2 cut(s)	57, 670
BstMAI	GTCTC	3 cut(s)	296, 613, 1077
BstMBI	GATC	2 cut(s)	54, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	1228
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	2 cut(s)	368, 1004
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	733
BstSLI	GKGCMC	1 cut(s)	328
BstV1I	GCAGC	3 cut(s)	401, 404, 839
BstV2I	GAAGAC	1 cut(s)	747
BstXI	CCANNNNNNTGG	2 cut(s)	492, 996
BsuRI	GGCC	2 cut(s)	356, 927
BtgI	CCRYGG	1 cut(s)	571
BtsCI	GGATG	2 cut(s)	112, 233
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	4 cut(s)	351, 359, 565, 742
BveI	ACCTGC	1 cut(s)	1237
Cac8I	GCNNGC	2 cut(s)	366, 708
CfoI	GCGC	1 cut(s)	602
Cfr13I	GGNCC	3 cut(s)	151, 500, 575
Csp6I	GTAC	3 cut(s)	403, 766, 783
CviAII	CATG	4 cut(s)	365, 572, 949, 1001
CviQI	GTAC	3 cut(s)	403, 766, 783
DdeI	CTNAG	4 cut(s)	306, 504, 915, 1026
DinI	GGCGCC	1 cut(s)	601
DpnI	GATC	2 cut(s)	56, 669
DpnII	GATC	2 cut(s)	54, 667
DriI	GACNNNNNGTC	2 cut(s)	29, 1077
EaeI	YGGCCR	1 cut(s)	925
Eam1104I	CTCTTC	4 cut(s)	381, 878, 1205, 1267
Eam1105I	GACNNNNNGTC	2 cut(s)	29, 1077
EarI	CTCTTC	4 cut(s)	381, 878, 1205, 1267
Ecl136II	GAGCTC	1 cut(s)	312
Eco130I	CCWWGG	3 cut(s)	436, 571, 603
Eco147I	AGGCCT	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	613
Eco32I	GATATC	1 cut(s)	547
Eco47I	GGWCC	3 cut(s)	151, 500, 575
Eco53kI	GAGCTC	1 cut(s)	312
Eco57I	CTGAAG	2 cut(s)	267, 1091
EcoICRI	GAGCTC	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	88
EcoRV	GATATC	1 cut(s)	547
EcoT14I	CCWWGG	3 cut(s)	436, 571, 603
EcoT38I	GRGCYC	1 cut(s)	314
EgeI	GGCGCC	1 cut(s)	601
EheI	GGCGCC	1 cut(s)	601
ErhI	CCWWGG	3 cut(s)	436, 571, 603
FaeI	CATG	4 cut(s)	368, 575, 952, 1004
FaqI	GGGAC	4 cut(s)	116, 164, 454, 561
FatI	CATG	4 cut(s)	364, 571, 948, 1000
FauNDI	CATATG	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	1226
Fnu4HI	GCNGC	4 cut(s)	390, 393, 840, 853
FokI	GGATG	2 cut(s)	99, 220
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	4 cut(s)	390, 393, 840, 853
FspBI	CTAG	2 cut(s)	240, 780
GlaI	GCGC	1 cut(s)	601
GluI	GCNGC	4 cut(s)	390, 393, 840, 853
HaeII	RGCGCY	1 cut(s)	603
HaeIII	GGCC	2 cut(s)	356, 927
HhaI	GCGC	1 cut(s)	602
Hin1I	GRCGYC	1 cut(s)	600
Hin1II	CATG	4 cut(s)	368, 575, 952, 1004
Hin6I	GCGC	1 cut(s)	600
HinP1I	GCGC	1 cut(s)	600
HincII	GTYRAC	1 cut(s)	38
HindII	GTYRAC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	373
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	3 cut(s)	38, 326, 1227
Hpy188I	TCNGA	3 cut(s)	372, 385, 1194
Hpy188III	TCNNGA	6 cut(s)	503, 661, 683, 821, 1082, 1091
Hpy8I	GTNNAC	3 cut(s)	38, 326, 1227
HpyAV	CCTTC	4 cut(s)	291, 658, 689, 1115
HpyCH4III	ACNGT	3 cut(s)	737, 1190, 1287
HpyCH4V	TGCA	9 cut(s)	167, 326, 364, 416, 827, 855, 890, 1204, 1246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1228
HpyF3I	CTNAG	4 cut(s)	306, 504, 915, 1026
Hsp92I	GRCGYC	1 cut(s)	600
Hsp92II	CATG	4 cut(s)	368, 575, 952, 1004
HspAI	GCGC	1 cut(s)	600
KasI	GGCGCC	1 cut(s)	599
KflI	GGGWCCC	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	54, 667
LguI	GCTCTTC	1 cut(s)	1267
LmnI	GCTCC	3 cut(s)	259, 298, 373
Lsp1109I	GCAGC	3 cut(s)	401, 404, 839
LweI	GCATC	2 cut(s)	814, 1191
MaeI	CTAG	2 cut(s)	240, 780
MaeIII	GTNAC	4 cut(s)	242, 638, 1029, 1069
MalI	GATC	2 cut(s)	56, 669
MboI	GATC	2 cut(s)	54, 667
MboII	GAAGA	7 cut(s)	368, 577, 752, 865, 1222, 1254, 1257
MhlI	GDGCHC	3 cut(s)	256, 314, 328
MluCI	AATT	6 cut(s)	82, 226, 466, 550, 1100, 1138
Mly113I	GGCGCC	1 cut(s)	600
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	2 cut(s)	395, 716
MnlI	CCTC	9 cut(s)	115, 120, 367, 623, 795, 881, 1035, 1087, 1206
MroXI	GAANNNNTTC	1 cut(s)	1130
MseI	TTAA	4 cut(s)	473, 762, 885, 939
MslI	CAYNNNNRTG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	841
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	1228
NarI	GGCGCC	1 cut(s)	600
NcoI	CCATGG	1 cut(s)	571
NdeI	CATATG	1 cut(s)	178
NdeII	GATC	2 cut(s)	54, 667
NlaIII	CATG	4 cut(s)	368, 575, 952, 1004
NlaIV	GGNNCC	4 cut(s)	152, 153, 577, 601
NmuCI	GTSAC	2 cut(s)	638, 1069
NspI	RCATGY	2 cut(s)	368, 1004
PaeI	GCATGC	1 cut(s)	368
PceI	AGGCCT	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	1267
PctI	GAATGC	1 cut(s)	841
PdmI	GAANNNNTTC	1 cut(s)	1130
PkrI	GCNGC	4 cut(s)	391, 394, 841, 854
PleI	GAGTC	1 cut(s)	367
PluTI	GGCGCC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	367
PpuMI	RGGWCCY	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	314
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	4 cut(s)	152, 153, 577, 601
PspPI	GGNCC	3 cut(s)	151, 500, 575
PspPPI	RGGWCCY	1 cut(s)	151
RsaI	GTAC	3 cut(s)	404, 767, 784
RsaNI	GTAC	3 cut(s)	403, 766, 783
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	1267
SaqAI	TTAA	4 cut(s)	473, 762, 885, 939
SatI	GCNGC	4 cut(s)	390, 393, 840, 853
Sau3AI	GATC	2 cut(s)	54, 667
Sau96I	GGNCC	3 cut(s)	151, 500, 575
ScaI	AGTACT	1 cut(s)	784
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	3 cut(s)	256, 314, 328
SetI	ASST	7 cut(s)	283, 314, 448, 681, 916, 1098, 1251
SfaNI	GCATC	2 cut(s)	814, 1191
SfcI	CTRYAG	1 cut(s)	733
SfoI	GGCGCC	1 cut(s)	601
SinI	GGWCC	3 cut(s)	151, 500, 575
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	3 cut(s)	313, 1046, 1089
SmoI	CTYRAG	3 cut(s)	313, 1046, 1089
SphI	GCATGC	1 cut(s)	368
Sse9I	AATT	6 cut(s)	82, 226, 466, 550, 1100, 1138
SseBI	AGGCCT	1 cut(s)	356
SsiI	CCGC	1 cut(s)	839
SspDI	GGCGCC	1 cut(s)	599
SspI	AATATT	1 cut(s)	1161
SspMI	CTAG	2 cut(s)	240, 780
SstI	GAGCTC	1 cut(s)	314
StuI	AGGCCT	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	3 cut(s)	436, 571, 603
TaaI	ACNGT	3 cut(s)	737, 1190, 1287
TaqI	TCGA	2 cut(s)	1081, 1116
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	6 cut(s)	82, 226, 466, 550, 1100, 1138
TatI	WGTACW	2 cut(s)	765, 782
TauI	GCSGC	1 cut(s)	842
Tru1I	TTAA	4 cut(s)	473, 762, 885, 939
Tru9I	TTAA	4 cut(s)	473, 762, 885, 939
TscAI	CASTG	4 cut(s)	351, 366, 565, 742
TseFI	GTSAC	2 cut(s)	638, 1069
TseI	GCWGC	3 cut(s)	389, 392, 852
Tsp45I	GTSAC	2 cut(s)	638, 1069
TspDTI	ATGAA	3 cut(s)	740, 1071, 1197
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	4 cut(s)	351, 366, 565, 742
VneI	GTGCAC	1 cut(s)	324
VpaK11BI	GGWCC	3 cut(s)	151, 500, 575
XapI	RAATTY	1 cut(s)	1100
XceI	RCATGY	2 cut(s)	368, 1004
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	1226
XmnI	GAANNNNTTC	1 cut(s)	1130
XspI	CTAG	2 cut(s)	240, 780
ZrmI	AGTACT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.