Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003441.1

Orthogroup ID

OG0006572

Physical Location & Seq

Genomic Coordinates Forward (+)

412870 .. 414115

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003441.1_g000099.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atggctgctcctcaatttgaacaacacaatccccatcctcatcagaaaactcccaaacaagaagaagggaaagaaaaggaagcaaacccagatgttcaatccacagagtccttccaatccaatctgtctctctgcaaggatggaagctcatctgatgcagcatcatgcatatcaaccgcaggagatacaactgctagtgtgaaaaaaggtgatgcagatgtagatacagattatgaatccatggcttcctatccaacaaccgcctattatggatatagctatccaggtagttatgatatggaaaaccaaggatactatgtcggtggaagtaccgggatggaagctcaataccctgtcatgcaagcagataatggctcttttgtctacttgatgccaggatatcagcctggctatgatccttacacgcagtacctgcccatgactaccatcagtagtgatggacaatatgtcggtcaacagatgtat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

162

Amino Acids

17.73

Weight (kDa)

4.19

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79270 AT1G79270 AT1G79270 AT1G79270
fragaria_vesca	FvH4_3g13840 FvH4_3g13840 FvH4_3g13840 FvH4_3g13840
malus_domestica	MD05G1240700.v1.1 MD10G1219100.v1.1
prunus_persica	Prupe.4G124900_v2.0.a1 Prupe.4G124900_v2.0.a1
pyrus_communis	pycom05g21690 pycom10g18460
rosa_chinensis	RchiOBHm_Chr5g0023021
rosa_laevigata	RLG00000032691
rosa_multiflora	Rmu_co8478305.1_g000001 Rmu_sc0002675.1_g000016 Rmu_sc0003441.1_g000099
rosa_roxburghii	Rroxscaffold_1G00056290
rosa_rugosa	Rorug05G0076600
rosa_samantha	Rh5AG162900 Rh5BG162100 Rh5CG176800 Rh5DG163400
rosa_wichuraiana	Rw5G014690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	384
AciI	CCGC	2 cut(s)	177, 261
AclWI	GGATC	1 cut(s)	410
AfaI	GTAC	2 cut(s)	331, 431
AgsI	TTSAA	2 cut(s)	20, 98
AhdI	GACNNNNNGTC	1 cut(s)	467
AjnI	CCWGG	3 cut(s)	283, 394, 406
AluBI	AGCT	3 cut(s)	147, 279, 344
AluI	AGCT	3 cut(s)	147, 279, 344
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	410
AlwNI	CAGNNNCTG	1 cut(s)	433
ApeKI	GCWGC	2 cut(s)	5, 158
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	5 cut(s)	42, 134, 331, 452, 455
BciT130I	CCWGG	3 cut(s)	285, 396, 408
BciVI	GTATCC	1 cut(s)	305
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	441
BfuI	GTATCC	1 cut(s)	305
BisI	GCNGC	2 cut(s)	6, 159
BlsI	GCNGC	2 cut(s)	7, 160
Bme1390I	CCNGG	4 cut(s)	285, 334, 396, 408
BmeRI	GACNNNNNGTC	1 cut(s)	467
BmrFI	CCNGG	4 cut(s)	285, 334, 396, 408
BmsI	GCATC	4 cut(s)	145, 170, 202, 381
BpuMI	CCSGG	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	240, 307
BseBI	CCWGG	3 cut(s)	285, 396, 408
BseDI	CCNNGG	2 cut(s)	240, 307
BseGI	GGATG	3 cut(s)	34, 145, 342
BseXI	GCAGC	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	333
BsmAI	GTCTC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	415
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	2 cut(s)	177, 261
BspMI	ACCTGC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	240, 307
BssMI	GATC	1 cut(s)	415
BssT1I	CCWWGG	2 cut(s)	240, 307
Bst2UI	CCWGG	3 cut(s)	285, 396, 408
BstAPI	GCANNNNNTGC	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	363
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	3 cut(s)	34, 145, 342
BstKTI	GATC	1 cut(s)	418
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	1 cut(s)	433
BstNI	CCWGG	3 cut(s)	285, 396, 408
BstSCI	CCNGG	4 cut(s)	283, 332, 394, 406
BstV1I	GCAGC	1 cut(s)	170
BsuI	GTATCC	1 cut(s)	305
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	3 cut(s)	34, 145, 342
BveI	ACCTGC	1 cut(s)	441
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	1 cut(s)	433
Csp6I	GTAC	2 cut(s)	330, 430
CviAII	CATG	4 cut(s)	165, 241, 358, 439
CviJI	RGCY	8 cut(s)	5, 147, 245, 279, 344, 375, 406, 411
CviKI_1	RGCY	8 cut(s)	5, 147, 245, 279, 344, 375, 406, 411
CviQI	GTAC	2 cut(s)	330, 430
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
DriI	GACNNNNNGTC	1 cut(s)	467
Eam1105I	GACNNNNNGTC	1 cut(s)	467
Eco130I	CCWWGG	2 cut(s)	240, 307
Eco32I	GATATC	1 cut(s)	401
EcoRII	CCWGG	3 cut(s)	283, 394, 406
EcoRV	GATATC	1 cut(s)	401
EcoT14I	CCWWGG	2 cut(s)	240, 307
EcoT22I	ATGCAT	1 cut(s)	170
ErhI	CCWWGG	2 cut(s)	240, 307
FaeI	CATG	4 cut(s)	168, 244, 361, 442
FatI	CATG	4 cut(s)	164, 240, 357, 438
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	6, 159
FokI	GGATG	3 cut(s)	21, 152, 349
Fsp4HI	GCNGC	2 cut(s)	6, 159
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	2 cut(s)	6, 159
HapII	CCGG	1 cut(s)	333
Hin1II	CATG	4 cut(s)	168, 244, 361, 442
HincII	GTYRAC	1 cut(s)	476
HindII	GTYRAC	1 cut(s)	476
HinfI	GANTC	2 cut(s)	107, 236
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	385, 476
Hpy188I	TCNGA	2 cut(s)	45, 154
Hpy8I	GTNNAC	2 cut(s)	385, 476
HpyAV	CCTTC	2 cut(s)	59, 121
HpyCH4V	TGCA	5 cut(s)	135, 158, 168, 215, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	433
Hsp92II	CATG	4 cut(s)	168, 244, 361, 442
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	4 cut(s)	145, 170, 202, 381
MaeI	CTAG	1 cut(s)	195
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	1 cut(s)	74
MluCI	AATT	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	2 cut(s)	21, 48
Mph1103I	ATGCAT	1 cut(s)	170
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	4 cut(s)	285, 334, 396, 408
MvaI	CCWGG	3 cut(s)	285, 396, 408
MwoI	GCNNNNNNNGC	1 cut(s)	433
NciI	CCSGG	1 cut(s)	334
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	1 cut(s)	415
NlaIII	CATG	4 cut(s)	168, 244, 361, 442
NsiI	ATGCAT	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	7, 160
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp6I	CCWGG	3 cut(s)	283, 394, 406
PspGI	CCWGG	3 cut(s)	283, 394, 406
PstNI	CAGNNNCTG	1 cut(s)	433
RsaI	GTAC	2 cut(s)	331, 431
RsaNI	GTAC	2 cut(s)	330, 430
SatI	GCNGC	2 cut(s)	6, 159
Sau3AI	GATC	1 cut(s)	415
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	4 cut(s)	285, 334, 396, 408
SetI	ASST	6 cut(s)	149, 211, 281, 289, 346, 435
SfaNI	GCATC	4 cut(s)	145, 170, 202, 381
Sse9I	AATT	1 cut(s)	14
SsiI	CCGC	2 cut(s)	177, 261
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	4 cut(s)	283, 332, 394, 406
StyI	CCWWGG	2 cut(s)	240, 307
TaqII	GACCGA	1 cut(s)	461
TasI	AATT	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	5, 158
TspDTI	ATGAA	1 cut(s)	249
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.