AT1G79390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012388
Physical Location & Seq
Reverse (-)
29863225 .. 29864330
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79390.1

Sequence Viewer

Length: 381 bp
ATGTCGTTCATGTATGAGAAGAGCAATACATGGAGATGGCTAGTGATGAAGACGCGAGATTCGAGATCCTTCTTCTTCACGTTCGCTGCTTTATGTGGTGTCATTCCTGGCGTTATTGGCTATGGAGTTATGCAGGTCACCAATTCCAGTAACCCTGAGCTCGAAGCCCGCCTCCGTAAATCTGCTCGCCCAGATACTCTCATGATGGGTAAAGTAAACCAAGAGAGGCTAGCTGAATATCTTGGTGAGTTGAAACAGAAGCAGGATACAAACGACAGATACGTTGCTGCTCTTAGGGGAGAGACTCTTACCAGGAAGCCTTATCAAAGAATCCAACCAATGCCAAAGCCAGATGACACGGTGACAACCAAAACTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.56

Weight (kDa)

9.76

Isoelectric Point (pI)

25.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79390
fragaria_vesca FvH4_3g13970
malus_domestica MD05G1239400.v1.1 MD10G1217600.v1.1
prunus_persica Prupe.4G126700_v2.0.a1
pyrus_communis pycom05g21570 pycom10g18350
rosa_chinensis RchiOBHm_Chr5g0023201
rosa_laevigata RLG00000032708
rosa_multiflora Rmu_sc0007300.1_g000013
rosa_roxburghii Rroxscaffold_1G00056150
rosa_rugosa Rorug05G0077700 Rorug05G0077800.1 Rorug05G0077900
rosa_samantha Rh5AG164000 Rh5BG163400 Rh5CG178700 Rh5DG165300
rosa_wichuraiana Rw5G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 124
AccII CGCG 1 cut(s) 55
AciI CCGC 1 cut(s) 169
AclWI GGATC 1 cut(s) 60
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 2 cut(s) 106, 311
AluBI AGCT 2 cut(s) 160, 233
AluI AGCT 2 cut(s) 160, 233
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 86, 287
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
AsuHPI GGTGA 3 cut(s) 130, 257, 373
AsuNHI GCTAGC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 73, 274
BccI CCATC 2 cut(s) 30, 199
BciT130I CCWGG 2 cut(s) 108, 313
BciVI GTATCC 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 2 cut(s) 41, 230
BfuAI ACCTGC 1 cut(s) 124
BfuI GTATCC 1 cut(s) 259
BisI GCNGC 2 cut(s) 87, 288
BlsI GCNGC 2 cut(s) 88, 289
Bme1390I CCNGG 2 cut(s) 108, 313
BmrFI CCNGG 2 cut(s) 108, 313
BmtI GCTAGC 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 147
BseBI CCWGG 2 cut(s) 108, 313
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 73, 274
Bsh1236I CGCG 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 65
BspACI CCGC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 148
BspFNI CGCG 1 cut(s) 55
BspHI TCATGA 1 cut(s) 201
BspMI ACCTGC 1 cut(s) 124
BspOI GCTAGC 1 cut(s) 233
BspPI GGATC 1 cut(s) 60
BspQI GCTCTTC 1 cut(s) 14
BsrI ACTGG 1 cut(s) 147
BssMI GATC 1 cut(s) 65
Bst2UI CCWGG 2 cut(s) 108, 313
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 3 cut(s) 169, 187, 231
BstDEI CTNAG 3 cut(s) 156, 293, 375
BstEII GGTNACC 1 cut(s) 136
BstFNI CGCG 1 cut(s) 55
BstKTI GATC 1 cut(s) 68
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 65
BstMWI GCNNNNNNNGC 1 cut(s) 117
BstNI CCWGG 2 cut(s) 108, 313
BstPI GGTNACC 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 106, 311
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 73, 274
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BsuI GTATCC 1 cut(s) 259
BveI ACCTGC 1 cut(s) 124
Cac8I GCNNGC 3 cut(s) 169, 187, 231
CciI TCATGA 1 cut(s) 201
CseI GACGC 1 cut(s) 61
CviAII CATG 3 cut(s) 10, 30, 202
CviJI RGCY 8 cut(s) 40, 120, 160, 167, 229, 233, 319, 349
CviKI_1 RGCY 8 cut(s) 40, 120, 160, 167, 229, 233, 319, 349
DdeI CTNAG 3 cut(s) 156, 293, 375
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 160
Eco91I GGTNACC 1 cut(s) 136
EcoICRI GAGCTC 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 106, 311
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 3 cut(s) 13, 33, 205
FaiI YATR 7 cut(s) 11, 15, 31, 94, 123, 131, 203
FatI CATG 3 cut(s) 9, 29, 201
FauI CCCGC 1 cut(s) 176
Fnu4HI GCNGC 2 cut(s) 87, 288
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 87, 288
FspBI CTAG 2 cut(s) 41, 230
GluI GCNGC 2 cut(s) 87, 288
HgaI GACGC 1 cut(s) 61
Hin1II CATG 3 cut(s) 13, 33, 205
HinfI GANTC 3 cut(s) 59, 304, 330
HphI GGTGA 3 cut(s) 130, 257, 373
Hpy166II GTNNAC 1 cut(s) 217
Hpy188III TCNNGA 2 cut(s) 63, 202
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 2 cut(s) 80, 282
HpyCH4V TGCA 1 cut(s) 133
HpyF10VI GCNNNNNNNGC 1 cut(s) 117
HpyF3I CTNAG 3 cut(s) 156, 293, 375
HpySE526I ACGT 2 cut(s) 80, 282
Hsp92II CATG 3 cut(s) 13, 33, 205
Kzo9I GATC 1 cut(s) 65
LguI GCTCTTC 1 cut(s) 14
Lsp1109I GCAGC 2 cut(s) 73, 274
MaeI CTAG 2 cut(s) 41, 230
MaeII ACGT 2 cut(s) 80, 282
MaeIII GTNAC 3 cut(s) 136, 149, 361
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 4 cut(s) 31, 61, 64, 67
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 1 cut(s) 142
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 2 cut(s) 182, 219
MslI CAYNNNNRTG 1 cut(s) 34
MspR9I CCNGG 2 cut(s) 108, 313
MvaI CCWGG 2 cut(s) 108, 313
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 117
NdeII GATC 1 cut(s) 65
NheI GCTAGC 1 cut(s) 229
NlaIII CATG 3 cut(s) 13, 33, 205
NmuCI GTSAC 2 cut(s) 136, 361
PagI TCATGA 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 14
PcsI WCGNNNNNNNCGW 2 cut(s) 59, 279
PfeI GAWTC 2 cut(s) 59, 330
PkrI GCNGC 2 cut(s) 88, 289
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 106, 311
PspEI GGTNACC 1 cut(s) 136
PspGI CCWGG 2 cut(s) 106, 311
PsuI RGATCY 1 cut(s) 65
RseI CAYNNNNRTG 1 cut(s) 34
SacI GAGCTC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 14
SatI GCNGC 2 cut(s) 87, 288
Sau3AI GATC 1 cut(s) 65
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 2 cut(s) 108, 313
SduI GDGCHC 1 cut(s) 162
SetI ASST 5 cut(s) 83, 138, 162, 235, 285
SmiMI CAYNNNNRTG 1 cut(s) 34
Sse9I AATT 1 cut(s) 142
SsiI CCGC 1 cut(s) 169
SspMI CTAG 2 cut(s) 41, 230
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 106, 311
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 2 cut(s) 83, 285
TaqI TCGA 2 cut(s) 62, 162
TasI AATT 1 cut(s) 142
TfiI GAWTC 2 cut(s) 59, 330
TseFI GTSAC 2 cut(s) 136, 361
TseI GCWGC 2 cut(s) 86, 287
Tsp45I GTSAC 2 cut(s) 136, 361
TspDTI ATGAA 1 cut(s) 62
TspGWI ACGGA 1 cut(s) 164
XspI CTAG 2 cut(s) 41, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.