Prupe.4G126700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012388
Physical Location & Seq
Reverse (-)
6957912 .. 6959695
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G126700.1

Sequence Viewer

Length: 384 bp
ATGTCGATACTGTGGGAGAAGAGCGGGACATGGCGGTGGATAGTGAACAAGACCCGTGACTCGAAGCCCTTCTTCTTGGCCTTCGCTACCGTATGCGGCGTCGTTCCGGGTGTCATTGGCTACTTCGTTATGCAGACCACCAACTCCCGAAATGAACAGCTCGAGGCCGAACTCCGCCGCAACGCCCGACCCGAATCCATCAGGATGGGGCAAGTAAATAAAGAAAGATTGGCTGAATTCCTTGGTGAGTTGCAGCGGAAAGAAAATACAAATGATCGCTATGTTGCTGCACTGAAAGGAGAGACATTGACTAGGAATCCATATGTGAGAATTCAACCGATTCCGAAGCCAAGCAACACCGAAGCTGACAAGGAACAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.69

Weight (kDa)

9.72

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79390
fragaria_vesca FvH4_3g13970
malus_domestica MD05G1239400.v1.1 MD10G1217600.v1.1
prunus_persica Prupe.4G126700_v2.0.a1
pyrus_communis pycom05g21570 pycom10g18350
rosa_chinensis RchiOBHm_Chr5g0023201
rosa_laevigata RLG00000032708
rosa_multiflora Rmu_sc0007300.1_g000013
rosa_roxburghii Rroxscaffold_1G00056150
rosa_rugosa Rorug05G0077700 Rorug05G0077800.1 Rorug05G0077900
rosa_samantha Rh5AG164000 Rh5BG163400 Rh5CG178700 Rh5DG165300
rosa_wichuraiana Rw5G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 24
AciI CCGC 6 cut(s) 24, 34, 96, 175, 178, 256
AcsI RAATTY 2 cut(s) 236, 330
AcyI GRCGYC 1 cut(s) 99
AgsI TTSAA 1 cut(s) 335
AluBI AGCT 2 cut(s) 160, 365
AluI AGCT 2 cut(s) 160, 365
Alw26I GTCTC 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 2 cut(s) 78, 165
ApeKI GCWGC 2 cut(s) 253, 287
ApoI RAATTY 2 cut(s) 236, 330
Asp700I GAANNNNTTC 1 cut(s) 68
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 161
BbvI GCAGC 2 cut(s) 265, 274
BccI CCATC 2 cut(s) 199, 206
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 1 cut(s) 312
BisI GCNGC 4 cut(s) 97, 178, 254, 288
BlsI GCNGC 4 cut(s) 98, 179, 255, 289
Bme1390I CCNGG 1 cut(s) 108
BmeT110I CYCGRG 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 210
BseXI GCAGC 2 cut(s) 265, 274
BsgI GTGCAG 1 cut(s) 273
BshFI GGCC 2 cut(s) 80, 167
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 2 cut(s) 80, 167
BsoBI CYCGRG 1 cut(s) 161
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 6 cut(s) 24, 34, 96, 175, 178, 256
BspANI GGCC 2 cut(s) 80, 167
BspQI GCTCTTC 1 cut(s) 14
BsrBI CCGCTC 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 241
Bst4CI ACNGT 2 cut(s) 12, 91
Bst6I CTCTTC 1 cut(s) 14
BstACI GRCGYC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 265, 274
BstXI CCANNNNNNTGG 1 cut(s) 205
BsuRI GGCC 2 cut(s) 80, 167
BtsCI GGATG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 290
CseI GACGC 1 cut(s) 88
CviAII CATG 1 cut(s) 30
CviJI RGCY 8 cut(s) 67, 80, 120, 160, 167, 233, 349, 365
CviKI_1 RGCY 8 cut(s) 67, 80, 120, 160, 167, 233, 349, 365
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EciI GGCGGA 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 161
EcoRI GAATTC 2 cut(s) 236, 330
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 1 cut(s) 33
FaiI YATR 6 cut(s) 31, 94, 131, 282, 322, 324
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FaqI GGGAC 1 cut(s) 40
FatI CATG 1 cut(s) 29
FauI CCCGC 1 cut(s) 17
FauNDI CATATG 1 cut(s) 322
Fnu4HI GCNGC 4 cut(s) 97, 178, 254, 288
FokI GGATG 1 cut(s) 217
Fsp4HI GCNGC 4 cut(s) 97, 178, 254, 288
FspBI CTAG 1 cut(s) 312
GluI GCNGC 4 cut(s) 97, 178, 254, 288
HaeIII GGCC 2 cut(s) 80, 167
HapII CCGG 1 cut(s) 107
HgaI GACGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 33
HinfI GANTC 4 cut(s) 59, 194, 316, 340
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 2 cut(s) 147, 202
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 79, 91
HpyCH4III ACNGT 2 cut(s) 12, 91
HpyCH4V TGCA 3 cut(s) 133, 253, 290
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 33
Kzo9I GATC 1 cut(s) 274
LguI GCTCTTC 1 cut(s) 14
LpnPI CCDG 2 cut(s) 120, 187
Lsp1109I GCAGC 2 cut(s) 265, 274
MaeI CTAG 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 276
MbiI CCGCTC 1 cut(s) 24
MboI GATC 1 cut(s) 274
MboII GAAGA 2 cut(s) 31, 64
MluCI AATT 2 cut(s) 236, 330
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 1 cut(s) 157
MroXI GAANNNNTTC 1 cut(s) 68
MslI CAYNNNNRTG 2 cut(s) 34, 203
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 108
NciI CCSGG 1 cut(s) 108
NdeI CATATG 1 cut(s) 322
NdeII GATC 1 cut(s) 274
NlaIII CATG 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 56
PaeR7I CTCGAG 1 cut(s) 161
PciSI GCTCTTC 1 cut(s) 14
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 3 cut(s) 194, 316, 340
PkrI GCNGC 4 cut(s) 98, 179, 255, 289
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PspXI VCTCGAGB 1 cut(s) 161
RseI CAYNNNNRTG 2 cut(s) 34, 203
SapI GCTCTTC 1 cut(s) 14
SatI GCNGC 4 cut(s) 97, 178, 254, 288
Sau3AI GATC 1 cut(s) 274
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 108
SetI ASST 2 cut(s) 162, 367
Sfr274I CTCGAG 1 cut(s) 161
SlaI CTCGAG 1 cut(s) 161
SmiMI CAYNNNNRTG 2 cut(s) 34, 203
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 2 cut(s) 236, 330
SsiI CCGC 6 cut(s) 24, 34, 96, 175, 178, 256
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 12, 91
TaqI TCGA 3 cut(s) 5, 62, 162
TasI AATT 2 cut(s) 236, 330
TauI GCSGC 2 cut(s) 99, 180
TfiI GAWTC 3 cut(s) 194, 316, 340
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 2 cut(s) 253, 287
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 1 cut(s) 297
XapI RAATTY 2 cut(s) 236, 330
XhoI CTCGAG 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.