MD05G1239400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0012388
Physical Location & Seq
Forward (+)
37031433 .. 37033265
1833 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1239400.v1.1.491

Sequence Viewer

Length: 366 bp
ATGCCGATGCTGTGGAGGTGGATAGTGAACAAGACCCGTGACTCGACGCCCTTCTTCTTGGCCTTCGCCACCGTCTGCGGCGTCGTTCCGGGCGTTATTGGTTACTTCGTTATGCAGACGACCAACTCCGGAAACCAACAGCTGGAGGCCGAGCTCCGCCGCAACGCCCGACCCGAATCCATGAGGATGGGGCAAGTAAATAAAGAAAGATTGGCAGAATTCCTTGGGGAGTTGCAGCGAAAGGAGAACACAAACGACCGCTATGTTGCTGCACTGAAAGGAGAGACATTGACTAGGAATCCATATGTGAGAATTCAACCAATTCCGAAGCCAAGCAATACTGAATCTGAGAAAGAACAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.95

Weight (kDa)

9.66

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79390
fragaria_vesca FvH4_3g13970
malus_domestica MD05G1239400.v1.1 MD10G1217600.v1.1
prunus_persica Prupe.4G126700_v2.0.a1
pyrus_communis pycom05g21570 pycom10g18350
rosa_chinensis RchiOBHm_Chr5g0023201
rosa_laevigata RLG00000032708
rosa_multiflora Rmu_sc0007300.1_g000013
rosa_roxburghii Rroxscaffold_1G00056150
rosa_rugosa Rorug05G0077700 Rorug05G0077800.1 Rorug05G0077900
rosa_samantha Rh5AG164000 Rh5BG163400 Rh5CG178700 Rh5DG165300
rosa_wichuraiana Rw5G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 142
AccIII TCCGGA 1 cut(s) 128
AciI CCGC 4 cut(s) 78, 157, 160, 259
AcsI RAATTY 2 cut(s) 218, 312
AcyI GRCGYC 2 cut(s) 47, 81
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 1 cut(s) 317
AluBI AGCT 2 cut(s) 142, 154
AluI AGCT 2 cut(s) 142, 154
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 278
Aor13HI TCCGGA 1 cut(s) 128
AoxI GGCC 2 cut(s) 60, 147
ApeKI GCWGC 2 cut(s) 235, 269
ApoI RAATTY 2 cut(s) 218, 312
AsuC2I CCSGG 1 cut(s) 90
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 247, 256
BccI CCATC 1 cut(s) 181
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 294
BisI GCNGC 4 cut(s) 79, 160, 236, 270
BlsI GCNGC 4 cut(s) 80, 161, 237, 271
Bme1390I CCNGG 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 90
BsaHI GRCGYC 2 cut(s) 47, 81
BsaJI CCNNGG 1 cut(s) 223
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 142
BseAI TCCGGA 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 339
BseXI GCAGC 2 cut(s) 247, 256
BsgI GTGCAG 1 cut(s) 255
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 2 cut(s) 62, 149
BsiEI CGRYCG 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 2 cut(s) 89, 129
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 278
BsnI GGCC 2 cut(s) 62, 149
Bsp1286I GDGCHC 1 cut(s) 156
Bsp13I TCCGGA 1 cut(s) 128
BspACI CCGC 4 cut(s) 78, 157, 160, 259
BspANI GGCC 2 cut(s) 62, 149
BspCNI CTCAG 1 cut(s) 340
BspEI TCCGGA 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 223
BssNI GRCGYC 2 cut(s) 47, 81
BssT1I CCWWGG 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 73
BstACI GRCGYC 2 cut(s) 47, 81
BstDEI CTNAG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 278
BstMCI CGRYCG 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 247, 256
BstXI CCANNNNNNTGG 1 cut(s) 187
BsuRI GGCC 2 cut(s) 62, 149
BtsCI GGATG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 272
CseI GACGC 2 cut(s) 55, 70
CviAII CATG 1 cut(s) 181
CviJI RGCY 5 cut(s) 62, 142, 149, 154, 331
CviKI_1 RGCY 5 cut(s) 62, 142, 149, 154, 331
DdeI CTNAG 1 cut(s) 348
EciI GGCGGA 1 cut(s) 146
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 154
EcoRI GAATTC 2 cut(s) 218, 312
EcoT14I CCWWGG 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 1 cut(s) 184
FaiI YATR 5 cut(s) 113, 182, 264, 304, 306
FatI CATG 1 cut(s) 180
FauNDI CATATG 1 cut(s) 304
Fnu4HI GCNGC 4 cut(s) 79, 160, 236, 270
FokI GGATG 1 cut(s) 199
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 4 cut(s) 79, 160, 236, 270
FspBI CTAG 1 cut(s) 294
GluI GCNGC 4 cut(s) 79, 160, 236, 270
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 2 cut(s) 62, 149
HapII CCGG 2 cut(s) 89, 129
HgaI GACGC 2 cut(s) 55, 70
Hin1I GRCGYC 2 cut(s) 47, 81
Hin1II CATG 1 cut(s) 184
HinfI GANTC 4 cut(s) 41, 176, 298, 344
HpaII CCGG 2 cut(s) 89, 129
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 327, 349
Hpy188III TCNNGA 1 cut(s) 129
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 2 cut(s) 49, 86
HpyAV CCTTC 2 cut(s) 61, 73
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 3 cut(s) 115, 235, 272
HpyF3I CTNAG 1 cut(s) 348
Hsp92I GRCGYC 2 cut(s) 47, 81
Hsp92II CATG 1 cut(s) 184
Kpn2I TCCGGA 1 cut(s) 128
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 3 cut(s) 102, 128, 142
Lsp1109I GCAGC 2 cut(s) 247, 256
MaeI CTAG 1 cut(s) 294
MaeIII GTNAC 2 cut(s) 38, 101
MboII GAAGA 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 3 cut(s) 218, 312, 321
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 3 cut(s) 9, 139, 177
MroI TCCGGA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 2 cut(s) 89, 129
MspR9I CCNGG 1 cut(s) 90
NciI CCSGG 1 cut(s) 90
NdeI CATATG 1 cut(s) 304
NlaIII CATG 1 cut(s) 184
NmeAIII GCCGAG 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 38
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 171
PfeI GAWTC 3 cut(s) 176, 298, 344
PflMI CCANNNNNTGG 1 cut(s) 142
PkrI GCNGC 4 cut(s) 80, 161, 237, 271
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 156
PvuII CAGCTG 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 156
SatI GCNGC 4 cut(s) 79, 160, 236, 270
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 1 cut(s) 156
SetI ASST 3 cut(s) 20, 144, 156
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 3 cut(s) 218, 312, 321
SsiI CCGC 4 cut(s) 78, 157, 160, 259
SspMI CTAG 1 cut(s) 294
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 44
TasI AATT 3 cut(s) 218, 312, 321
TauI GCSGC 2 cut(s) 81, 162
TfiI GAWTC 3 cut(s) 176, 298, 344
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 2 cut(s) 235, 269
Tsp45I GTSAC 1 cut(s) 38
TspRI CASTG 1 cut(s) 279
Van91I CCANNNNNTGG 1 cut(s) 142
XapI RAATTY 2 cut(s) 218, 312
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.