Rh5BG163400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012388
Physical Location & Seq
Reverse (-)
17045177 .. 17046552
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG163400.1

Sequence Viewer

Length: 381 bp
ATGTCGATTCTATTGAAGAGCCAAACATGGAGGTGGATAGTGACCAAGACCCGCGACTCCAAGCCCTTCTTCTTCACCTTCGCCACCGTATGCGGCGTCGTTCCGGGAATTATCGGCTACTTCGTTATGCAGACCACCAACTCCGGCAACCCAGAGCTCGAGGCCGAGCTTCGCCGCAAAGCCCGACCCGATACTGTGATGATGGGGCAAACAAATAAAGAACGATTGGCAGAGTACCTAGGGGAGCTGCAGCGGAAAGAGAACACAAATGACCGCTATGTTGCTGCACTGAAAGGACAGACATTGACTAGGAATCCATATGTGAGAATTCAACCAGTTCCAAAGGAAAGCAACACGGAATCTAACAAGGAACAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.52

Weight (kDa)

9.76

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79390
fragaria_vesca FvH4_3g13970
malus_domestica MD05G1239400.v1.1 MD10G1217600.v1.1
prunus_persica Prupe.4G126700_v2.0.a1
pyrus_communis pycom05g21570 pycom10g18350
rosa_chinensis RchiOBHm_Chr5g0023201
rosa_laevigata RLG00000032708
rosa_multiflora Rmu_sc0007300.1_g000013
rosa_roxburghii Rroxscaffold_1G00056150
rosa_rugosa Rorug05G0077700 Rorug05G0077800.1 Rorug05G0077900
rosa_samantha Rh5AG164000 Rh5BG163400 Rh5CG178700 Rh5DG165300
rosa_wichuraiana Rw5G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 54
AciI CCGC 5 cut(s) 52, 93, 175, 253, 274
AcsI RAATTY 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 2 cut(s) 16, 332
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 3 cut(s) 157, 169, 247
AluI AGCT 3 cut(s) 157, 169, 247
Alw21I GWGCWC 1 cut(s) 159
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 3 cut(s) 247, 250, 284
ApoI RAATTY 1 cut(s) 327
AspA2I CCTAGG 1 cut(s) 238
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 158
AvrII CCTAGG 1 cut(s) 238
BanII GRGCYC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 3 cut(s) 234, 262, 271
BccI CCATC 1 cut(s) 196
BcnI CCSGG 1 cut(s) 105
BfaI CTAG 2 cut(s) 239, 309
BfmI CTRYAG 1 cut(s) 248
BisI GCNGC 5 cut(s) 94, 175, 248, 251, 285
BlnI CCTAGG 1 cut(s) 238
BlsI GCNGC 5 cut(s) 95, 176, 249, 252, 286
Bme1390I CCNGG 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 238
BseNI ACTGG 1 cut(s) 335
BseXI GCAGC 3 cut(s) 234, 262, 271
BsgI GTGCAG 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 2 cut(s) 104, 144
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 159
BspACI CCGC 5 cut(s) 52, 93, 175, 253, 274
BspANI GGCC 1 cut(s) 164
BspFNI CGCG 1 cut(s) 54
BspMAI CTGCAG 1 cut(s) 252
BspQI GCTCTTC 1 cut(s) 11
BsrI ACTGG 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 238
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 238
Bst4CI ACNGT 2 cut(s) 88, 196
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 96
BstFNI CGCG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 248
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 3 cut(s) 234, 262, 271
BsuRI GGCC 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 287
CseI GACGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 235
CviAII CATG 1 cut(s) 27
CviJI RGCY 8 cut(s) 21, 64, 117, 157, 164, 169, 182, 247
CviKI_1 RGCY 8 cut(s) 21, 64, 117, 157, 164, 169, 182, 247
CviQI GTAC 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Ecl136II GAGCTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 1 cut(s) 30
FaiI YATR 6 cut(s) 28, 91, 128, 279, 319, 321
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FatI CATG 1 cut(s) 26
FauI CCCGC 1 cut(s) 59
FauNDI CATATG 1 cut(s) 319
Fnu4HI GCNGC 5 cut(s) 94, 175, 248, 251, 285
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 5 cut(s) 94, 175, 248, 251, 285
FspBI CTAG 2 cut(s) 239, 309
GluI GCNGC 5 cut(s) 94, 175, 248, 251, 285
HaeIII GGCC 1 cut(s) 164
HapII CCGG 2 cut(s) 104, 144
HgaI GACGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 1 cut(s) 30
HinfI GANTC 4 cut(s) 7, 56, 313, 359
HpaII CCGG 2 cut(s) 104, 144
HphI GGTGA 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 76, 88
HpyCH4III ACNGT 2 cut(s) 88, 196
HpyCH4V TGCA 3 cut(s) 130, 250, 287
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 30
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 4 cut(s) 117, 157, 165, 348
Lsp1109I GCAGC 3 cut(s) 234, 262, 271
MaeI CTAG 2 cut(s) 239, 309
MaeIII GTNAC 1 cut(s) 40
MboII GAAGA 3 cut(s) 28, 61, 64
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 2 cut(s) 108, 327
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 2 cut(s) 24, 154
MslI CAYNNNNRTG 1 cut(s) 31
MspA1I CMGCKG 1 cut(s) 253
MspI CCGG 2 cut(s) 104, 144
MspR9I CCNGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 54
NciI CCSGG 1 cut(s) 105
NdeI CATATG 1 cut(s) 319
NlaIII CATG 1 cut(s) 30
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 3 cut(s) 7, 313, 359
PfoI TCCNGGA 1 cut(s) 103
PkrI GCNGC 5 cut(s) 95, 176, 249, 252, 286
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 159
PspXI VCTCGAGB 1 cut(s) 158
PstI CTGCAG 1 cut(s) 252
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 31
SacI GAGCTC 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 11
SatI GCNGC 5 cut(s) 94, 175, 248, 251, 285
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 159
SetI ASST 6 cut(s) 35, 80, 159, 171, 240, 249
SfcI CTRYAG 1 cut(s) 248
Sfr274I CTCGAG 1 cut(s) 158
SlaI CTCGAG 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 2 cut(s) 108, 327
SsiI CCGC 5 cut(s) 52, 93, 175, 253, 274
SspMI CTAG 2 cut(s) 239, 309
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 2 cut(s) 88, 196
TaqI TCGA 2 cut(s) 5, 159
TasI AATT 2 cut(s) 108, 327
TauI GCSGC 2 cut(s) 96, 177
TfiI GAWTC 3 cut(s) 7, 313, 359
TscAI CASTG 1 cut(s) 294
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 3 cut(s) 247, 250, 284
Tsp45I GTSAC 1 cut(s) 40
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 1 cut(s) 294
XapI RAATTY 1 cut(s) 327
XhoI CTCGAG 1 cut(s) 158
XmaJI CCTAGG 1 cut(s) 238
XspI CTAG 2 cut(s) 239, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.