Rorug05G0077900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012388
Physical Location & Seq
Forward (+)
6752410 .. 6754007
1598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0077900.1

Sequence Viewer

Length: 1107 bp
ATGAGCTATGGATGGCTCGGTATGAACGTGTATACGCAGACAATGCAGAAAAGGAGAGACGTTTCAAGATATTCAAGGACAATGCGGAATACGTACACAAGTTCAACGATGAAGAGAATAATCACGTACACTTATAAGTTAAGCCTCAACGAATTTGCAGACTTAACCGATGAAGAATTCTCGAGGGCTTATACTGGGTGCAAGAGGTCCATTCGTTCAGCAGGATCATTTAAAACGATCGACCCTATCAAGTACGAAAATCTGACTGATGTTCCATCTAGCATTGACTGGAGAGAGAAAGGAGCTGTTACCCCAGTAAAATATCAAGGCCAATGTCGAAGTTGCTGGGCGTTTTCAGCAGTGGCGGCTGTGGAGGGGATTACGAAAATCAAATCCGGTAAATTGATCTCTTTCTCAGAGCAAGAATTAGTGGACTGTGATAAAGTAATCTGGGGTTCACATCCAAAACCAATTGGCAATGGATGGAGTGGCCCAAACCCTTATAAATCCATAAGCAAGGTCACATGGGAATGTGGGATGTATATATTCTCAACACGCCCCCGCACGTGTGGCGAATTTTCAAGCCATACACGTGGACAACTTTGGGTGACGTGGAGCCCGTGTGGCCGTAAGGCATGCACACGTAGCTATGGTCACCTGGACAGTGCCTTTGCTTACATAGCACATGCCGGCATTTCCAGTGAATCAAATTACCCATACACAGAAAAGGAAGGAACTTGTGATACTAACAAGACAAGGGACTATGCTGCCAAGATCACAAACTATGCCATCGTTGATCTTAACAGCGAGACAGAATTATTAAATGTGGTTTCTAAGCAACCGGTCTCAGCAATGGTTGACAGAAAAGGGAGGGAGTTCAGACTTTACTCCGGTGGAGTCTTCTCTGGAGAATGTGGGACATCACTGGACCATTCTGTAACGGTCATCGGGTATGGGAGGACTGAGGATGGCATCAAGTATTGGCTAGTGAAAAATTCATGGGGTGAGCACTGGGGAGAGAGTGGCTACATGAGAATCCGCAGAGGGGTTGATGCTCCACAAGGTCTTTGTGGTATTGCTATGCAACCTTTATATCCGATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

368

Amino Acids

41.42

Weight (kDa)

9.03

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 91 - 148 4.8e-23 Papain family cysteine protease
Peptidase_C1 PF00112 216 - 367 3.7e-42 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79390
fragaria_vesca FvH4_3g13970
malus_domestica MD05G1239400.v1.1 MD10G1217600.v1.1
prunus_persica Prupe.4G126700_v2.0.a1
pyrus_communis pycom05g21570 pycom10g18350
rosa_chinensis RchiOBHm_Chr5g0023201
rosa_laevigata RLG00000032708
rosa_multiflora Rmu_sc0007300.1_g000013
rosa_roxburghii Rroxscaffold_1G00056150
rosa_rugosa Rorug05G0077700 Rorug05G0077800.1 Rorug05G0077900
rosa_samantha Rh5AG164000 Rh5BG163400 Rh5CG178700 Rh5DG165300
rosa_wichuraiana Rw5G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 135, 504
AccI GTMKAC 1 cut(s) 32
AciI CCGC 4 cut(s) 85, 365, 562, 1039
AclWI GGATC 1 cut(s) 232
AcoI YGGCCR 1 cut(s) 625
AcsI RAATTY 4 cut(s) 152, 176, 575, 994
AcvI CACGTG 2 cut(s) 567, 593
AfaI GTAC 3 cut(s) 95, 128, 254
AfiI CCNNNNNNNGG 1 cut(s) 1045
AflIII ACRYGT 4 cut(s) 27, 566, 590, 641
AgeI ACCGGT 1 cut(s) 841
AgsI TTSAA 4 cut(s) 66, 75, 105, 582
AjiI CACGTC 1 cut(s) 612
AjnI CCWGG 1 cut(s) 657
AluBI AGCT 3 cut(s) 6, 305, 648
AluI AGCT 3 cut(s) 6, 305, 648
Alw21I GWGCWC 1 cut(s) 1011
Alw26I GTCTC 3 cut(s) 51, 803, 850
AlwI GGATC 1 cut(s) 232
Ama87I CYCGRG 1 cut(s) 181
AoxI GGCC 3 cut(s) 328, 490, 625
ApeKI GCWGC 1 cut(s) 767
ApoI RAATTY 4 cut(s) 152, 176, 575, 994
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
AsiGI ACCGGT 1 cut(s) 841
AspS9I GGNCC 3 cut(s) 207, 491, 928
AsuHPI GGTGA 3 cut(s) 619, 647, 1016
AvaI CYCGRG 1 cut(s) 181
AvaII GGWCC 2 cut(s) 207, 928
BanII GRGCYC 1 cut(s) 620
BbrPI CACGTG 2 cut(s) 567, 593
BbsI GAAGAC 1 cut(s) 892
Bbv12I GWGCWC 1 cut(s) 1011
BbvI GCAGC 1 cut(s) 754
BccI CCATC 5 cut(s) 6, 283, 477, 797, 962
BceAI ACGGC 1 cut(s) 612
BciT130I CCWGG 1 cut(s) 659
BcoDI GTCTC 3 cut(s) 51, 803, 850
BfaI CTAG 2 cut(s) 279, 986
BglI GCCNNNNNGGC 1 cut(s) 624
BisI GCNGC 2 cut(s) 366, 768
BlsI GCNGC 2 cut(s) 367, 769
Bme1390I CCNGG 1 cut(s) 659
Bme18I GGWCC 2 cut(s) 207, 928
BmeT110I CYCGRG 1 cut(s) 181
BmgBI CACGTC 1 cut(s) 612
BmgT120I GGNCC 3 cut(s) 207, 491, 928
BmiI GGNNCC 1 cut(s) 617
BmrFI CCNGG 1 cut(s) 659
BmrI ACTGGG 3 cut(s) 204, 308, 1021
BmsI GCATC 2 cut(s) 981, 1042
BmuI ACTGGG 3 cut(s) 204, 308, 1021
BpiI GAAGAC 1 cut(s) 892
BpmI CTGGAG 2 cut(s) 310, 927
BsaAI YACGTR 5 cut(s) 93, 126, 567, 593, 644
BsaI GGTCTC 1 cut(s) 850
BsaWI WCCGGW 3 cut(s) 395, 841, 890
BsaXI ACNNNNNCTCC 2 cut(s) 607, 637
Bsc4I CCNNNNNNNGG 1 cut(s) 1045
Bse118I RCCGGY 2 cut(s) 689, 841
Bse1I ACTGG 6 cut(s) 199, 293, 314, 699, 930, 1016
Bse3DI GCAATG 2 cut(s) 484, 858
BseBI CCWGG 1 cut(s) 659
BseGI GGATG 5 cut(s) 17, 460, 488, 543, 973
BseLI CCNNNNNNNGG 1 cut(s) 1045
BseMI GCAATG 2 cut(s) 484, 858
BseMII CTCAG 3 cut(s) 429, 861, 954
BseNI ACTGG 6 cut(s) 199, 293, 314, 699, 930, 1016
BseXI GCAGC 1 cut(s) 754
BseYI CCCAGC 1 cut(s) 345
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 3 cut(s) 330, 492, 627
BshTI ACCGGT 1 cut(s) 841
BsiEI CGRYCG 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 1011
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 4 cut(s) 396, 690, 842, 891
BslFI GGGAC 2 cut(s) 773, 931
BslI CCNNNNNNNGG 1 cut(s) 1045
BsmAI GTCTC 3 cut(s) 51, 803, 850
BsmBI CGTCTC 1 cut(s) 51
BsmFI GGGAC 2 cut(s) 773, 931
BsnI GGCC 3 cut(s) 330, 492, 627
Bso31I GGTCTC 1 cut(s) 850
BsoBI CYCGRG 1 cut(s) 181
Bsp1286I GDGCHC 2 cut(s) 620, 1011
Bsp143I GATC 5 cut(s) 224, 237, 405, 774, 796
BspACI CCGC 4 cut(s) 85, 365, 562, 1039
BspANI GGCC 3 cut(s) 330, 492, 627
BspCNI CTCAG 3 cut(s) 428, 860, 955
BspLI GGNNCC 1 cut(s) 617
BspPI GGATC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 850
BsrDI GCAATG 2 cut(s) 484, 858
BsrFI RCCGGY 2 cut(s) 689, 841
BsrI ACTGG 6 cut(s) 199, 293, 314, 699, 930, 1016
BssAI RCCGGY 2 cut(s) 689, 841
BssMI GATC 5 cut(s) 224, 237, 405, 774, 796
BssNAI GTATAC 1 cut(s) 33
Bst1107I GTATAC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 3 cut(s) 437, 665, 943
Bst6I CTCTTC 1 cut(s) 107
BstAPI GCANNNNNTGC 1 cut(s) 43
BstBAI YACGTR 5 cut(s) 93, 126, 567, 593, 644
BstC8I GCNNGC 2 cut(s) 637, 691
BstDEI CTNAG 4 cut(s) 415, 834, 847, 963
BstEII GGTNACC 1 cut(s) 653
BstF5I GGATG 5 cut(s) 17, 460, 488, 543, 973
BstKTI GATC 5 cut(s) 227, 240, 408, 777, 799
BstMAI GTCTC 3 cut(s) 51, 803, 850
BstMBI GATC 5 cut(s) 224, 237, 405, 774, 796
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 7 cut(s) 43, 356, 365, 570, 624, 645, 680
BstNI CCWGG 1 cut(s) 659
BstNSI RCATGY 2 cut(s) 639, 689
BstPI GGTNACC 1 cut(s) 653
BstSCI CCNGG 1 cut(s) 657
BstSNI TACGTA 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 754
BstV2I GAAGAC 1 cut(s) 892
BstXI CCANNNNNNTGG 1 cut(s) 593
BstZ17I GTATAC 1 cut(s) 33
BsuRI GGCC 3 cut(s) 330, 492, 627
BtrI CACGTC 1 cut(s) 612
BtsCI GGATG 5 cut(s) 17, 460, 488, 543, 973
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 5 cut(s) 366, 670, 706, 923, 1009
Cac8I GCNNGC 2 cut(s) 637, 691
Cfr10I RCCGGY 2 cut(s) 689, 841
Cfr13I GGNCC 3 cut(s) 207, 491, 928
Csp6I GTAC 3 cut(s) 94, 127, 253
CspAI ACCGGT 1 cut(s) 841
CviAII CATG 5 cut(s) 525, 636, 686, 999, 1030
CviQI GTAC 3 cut(s) 94, 127, 253
DdeI CTNAG 4 cut(s) 415, 834, 847, 963
DpnI GATC 5 cut(s) 226, 239, 407, 776, 798
DpnII GATC 5 cut(s) 224, 237, 405, 774, 796
DraI TTTAAA 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 625
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Eco105I TACGTA 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 620
Eco31I GGTCTC 1 cut(s) 850
Eco47I GGWCC 2 cut(s) 207, 928
Eco72I CACGTG 2 cut(s) 567, 593
Eco88I CYCGRG 1 cut(s) 181
Eco91I GGTNACC 1 cut(s) 653
EcoO65I GGTNACC 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 620
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 5 cut(s) 528, 639, 689, 1002, 1033
FaqI GGGAC 2 cut(s) 773, 931
FatI CATG 5 cut(s) 524, 635, 685, 998, 1029
FauI CCCGC 1 cut(s) 569
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 2 cut(s) 366, 768
FokI GGATG 5 cut(s) 24, 447, 495, 550, 980
FriOI GRGCYC 1 cut(s) 620
Fsp4HI GCNGC 2 cut(s) 366, 768
FspBI CTAG 2 cut(s) 279, 986
GluI GCNGC 2 cut(s) 366, 768
GsaI CCCAGC 1 cut(s) 349
GsuI CTGGAG 2 cut(s) 310, 927
HaeIII GGCC 3 cut(s) 330, 492, 627
HapII CCGG 4 cut(s) 396, 690, 842, 891
Hin1II CATG 5 cut(s) 528, 639, 689, 1002, 1033
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HinfI GANTC 3 cut(s) 704, 897, 1035
HpaII CCGG 4 cut(s) 396, 690, 842, 891
HphI GGTGA 3 cut(s) 619, 647, 1016
Hpy166II GTNNAC 7 cut(s) 33, 96, 129, 433, 458, 596, 859
Hpy188I TCNGA 4 cut(s) 264, 418, 881, 1098
Hpy188III TCNNGA 3 cut(s) 66, 181, 906
Hpy8I GTNNAC 7 cut(s) 33, 96, 129, 433, 458, 596, 859
HpyAV CCTTC 1 cut(s) 725
HpyCH4III ACNGT 3 cut(s) 437, 665, 943
HpyCH4IV ACGT 8 cut(s) 27, 60, 92, 125, 566, 592, 611, 643
HpyCH4V TGCA 5 cut(s) 46, 158, 201, 639, 1084
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 356, 365, 570, 624, 645, 680
HpyF3I CTNAG 4 cut(s) 415, 834, 847, 963
HpySE526I ACGT 8 cut(s) 27, 60, 92, 125, 566, 592, 611, 643
Hsp92II CATG 5 cut(s) 528, 639, 689, 1002, 1033
KroI GCCGGC 1 cut(s) 689
KroNI GCCGGC 1 cut(s) 691
Kzo9I GATC 5 cut(s) 224, 237, 405, 774, 796
LmnI GCTCC 3 cut(s) 302, 615, 1060
Lsp1109I GCAGC 1 cut(s) 754
LweI GCATC 2 cut(s) 981, 1042
MaeI CTAG 2 cut(s) 279, 986
MaeII ACGT 8 cut(s) 27, 60, 92, 125, 566, 592, 611, 643
MaeIII GTNAC 5 cut(s) 307, 520, 607, 653, 937
MalI GATC 5 cut(s) 226, 239, 407, 776, 798
MboI GATC 5 cut(s) 224, 237, 405, 774, 796
MboII GAAGA 3 cut(s) 124, 185, 892
MfeI CAATTG 1 cut(s) 471
MhlI GDGCHC 2 cut(s) 620, 1011
MluCI AATT 9 cut(s) 152, 176, 401, 425, 471, 575, 709, 815, 994
MlyI GAGTC 1 cut(s) 906
MnlI CCTC 8 cut(s) 155, 177, 198, 367, 864, 951, 958, 1037
MroNI GCCGGC 1 cut(s) 689
MseI TTAA 6 cut(s) 140, 164, 231, 801, 821, 1105
MslI CAYNNNNRTG 2 cut(s) 529, 591
MspI CCGG 4 cut(s) 396, 690, 842, 891
MspR9I CCNGG 1 cut(s) 659
MunI CAATTG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 659
MwoI GCNNNNNNNGC 7 cut(s) 43, 356, 365, 570, 624, 645, 680
NaeI GCCGGC 1 cut(s) 691
NdeII GATC 5 cut(s) 224, 237, 405, 774, 796
NgoMIV GCCGGC 1 cut(s) 689
NlaIII CATG 5 cut(s) 528, 639, 689, 1002, 1033
NlaIV GGNNCC 1 cut(s) 617
NmuCI GTSAC 3 cut(s) 520, 607, 653
NspI RCATGY 2 cut(s) 639, 689
PaeI GCATGC 1 cut(s) 639
PaeR7I CTCGAG 1 cut(s) 181
PcsI WCGNNNNNNNCGW 2 cut(s) 24, 617
PdiI GCCGGC 1 cut(s) 691
PfeI GAWTC 2 cut(s) 704, 1035
PinAI ACCGGT 1 cut(s) 841
PkrI GCNGC 2 cut(s) 367, 769
Ple19I CGATCG 1 cut(s) 240
PleI GAGTC 1 cut(s) 905
PmaCI CACGTG 2 cut(s) 567, 593
PmlI CACGTG 2 cut(s) 567, 593
PpsI GAGTC 1 cut(s) 905
Ppu21I YACGTR 5 cut(s) 93, 126, 567, 593, 644
PsiI TTATAA 2 cut(s) 135, 504
Psp6I CCWGG 1 cut(s) 657
PspCI CACGTG 2 cut(s) 567, 593
PspEI GGTNACC 1 cut(s) 653
PspFI CCCAGC 1 cut(s) 345
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 1 cut(s) 617
PspPI GGNCC 3 cut(s) 207, 491, 928
PsrI GAACNNNNNNTAC 2 cut(s) 727, 759
PvuI CGATCG 1 cut(s) 240
RsaI GTAC 3 cut(s) 95, 128, 254
RsaNI GTAC 3 cut(s) 94, 127, 253
RseI CAYNNNNRTG 2 cut(s) 529, 591
SaqAI TTAA 6 cut(s) 140, 164, 231, 801, 821, 1105
SatI GCNGC 2 cut(s) 366, 768
Sau3AI GATC 5 cut(s) 224, 237, 405, 774, 796
Sau96I GGNCC 3 cut(s) 207, 491, 928
SchI GAGTC 1 cut(s) 906
ScrFI CCNGG 1 cut(s) 659
SduI GDGCHC 2 cut(s) 620, 1011
SfaNI GCATC 2 cut(s) 981, 1042
Sfr274I CTCGAG 1 cut(s) 181
SinI GGWCC 2 cut(s) 207, 928
SlaI CTCGAG 1 cut(s) 181
SmiMI CAYNNNNRTG 2 cut(s) 529, 591
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
SnaBI TACGTA 1 cut(s) 93
SphI GCATGC 1 cut(s) 639
Sse9I AATT 9 cut(s) 152, 176, 401, 425, 471, 575, 709, 815, 994
SsiI CCGC 4 cut(s) 85, 365, 562, 1039
SspMI CTAG 2 cut(s) 279, 986
StyD4I CCNGG 1 cut(s) 657
TaaI ACNGT 3 cut(s) 437, 665, 943
TaiI ACGT 8 cut(s) 30, 63, 95, 128, 569, 595, 614, 646
TaqI TCGA 3 cut(s) 182, 240, 337
TasI AATT 9 cut(s) 152, 176, 401, 425, 471, 575, 709, 815, 994
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 2 cut(s) 704, 1035
Tru1I TTAA 6 cut(s) 140, 164, 231, 801, 821, 1105
Tru9I TTAA 6 cut(s) 140, 164, 231, 801, 821, 1105
TscAI CASTG 5 cut(s) 366, 670, 706, 930, 1016
TseFI GTSAC 3 cut(s) 520, 607, 653
TseI GCWGC 1 cut(s) 767
Tsp45I GTSAC 3 cut(s) 520, 607, 653
TspDTI ATGAA 4 cut(s) 38, 125, 186, 987
TspRI CASTG 5 cut(s) 366, 670, 706, 930, 1016
VpaK11BI GGWCC 2 cut(s) 207, 928
XapI RAATTY 4 cut(s) 152, 176, 575, 994
XceI RCATGY 2 cut(s) 639, 689
XhoI CTCGAG 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 32
XspI CTAG 2 cut(s) 279, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.