AT1G79550

Phosphoglycerate kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008242
Physical Location & Seq
Reverse (-)
29924023 .. 29926636
2614 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79550.1

Sequence Viewer

Length: 1206 bp
ATGGCGACGAAGAGAAGCGTTGGAACTTTGAAGGAAGCGGATCTGAAGGGAAAGAGTGTGTTCGTGAGGGTTGATCTCAACGTTCCTTTGGATGATAACTCTAACATCACCGATGACACCAGGATTCGTGCCGCTGTTCCCACCATCAAGTACTTGATGGGTAATGGATCTAGGGTTGTTCTCTGCAGTCACTTGGGCCGCCCAAAAGGTGTTACTCCTAAGTACAGCTTAAAGCCTCTTGTGCCCAGATTGTCTGAACTTCTTGGTGTTGAGGTTGTAATGGCAAATGACTCTATTGGTGAGGAAGTCCAGAAGTTGGTTGCAGGACTACCTGAAGGTGGTGTTTTGCTCTTGGAGAATGTGAGGTTCTACGCCGAGGAAGAGAAGAATGATCCTGAATTTGCAAAGAAGCTTGCTGCTCTTGCCGATGTTTACGTTAATGATGCCTTCGGAACTGCTCACAGAGCTCATGCTTCCACTGAGGGAGTTGCCAAATTCTTGAAGCCTTCAGTTGCTGGTTTCCTCATGCAGAAGGAACTTGATTACCTTGTCGGAGCTGTGGCAAACCCCAAGAAGCCTTTTGCTGCCATTGTTGGAGGCTCAAAGGTTTCAACAAAGATTGGTGTCATTGAGTCTCTCTTGAACACAGTTGACATCCTCCTGCTCGGTGGAGGTATGATTTTTACTTTCTACAAGGCACAAGGACTCTCAGTCGGATCTTCCCTTGTGGAGGAGGACAAGCTTGACTTGGCAAAGTCACTCATGGAGAAAGCAAAGGCCAAAGGTGTCTCTCTCTTGCTCCCAACCGATGTGGTTATTGCTGACAAGTTTGCTCCCGATGCTAACAGCAAGATAGTGCCAGCCACTGCCATCCCTGATGGCTGGATGGGTCTAGATATTGGTCCAGACTCCATCAAGACATTCAGCGAAGCTCTGGACACAACCAAAACCATCATCTGGAATGGTCCCATGGGTGTGTTTGAATTCGATAAGTTTGCTGCTGGAACTGAGGCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAAAGGGAGTAACCACAATCATTGGAGGAGGTGACTCTGTTGCTGCCGTCGAGAAGGTTGGTTTGGCAGACAAGATGAGCCACATCTCTACCGGAGGCGGTGCTAGTTTGGAGCTTCTTGAGGGTAAGCCACTTCCAGGAGTCCTCGCTCTCGACGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002237 GO:0003674 GO:0003824 GO:0004618 GO:0004672 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0016020 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016774 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019693 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0034284 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046939 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:0098588 GO:0098805 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PGK

Protein Analysis

401

Amino Acids

42.13

Weight (kDa)

5.49

Isoelectric Point (pI)

26.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGK PF00162 10 - 390 1.1e-168 Phosphoglycerate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 316, 957
AciI CCGC 5 cut(s) 38, 132, 199, 1041, 1140
AclI AACGTT 1 cut(s) 81
AclWI GGATC 4 cut(s) 48, 175, 386, 724
AcsI RAATTY 3 cut(s) 398, 494, 983
AcuI CTGAAG 3 cut(s) 65, 354, 492
AfaI GTAC 2 cut(s) 152, 224
AfiI CCNNNNNNNGG 5 cut(s) 316, 338, 730, 957, 1178
AgsI TTSAA 5 cut(s) 31, 502, 612, 643, 983
AhdI GACNNNNNGTC 1 cut(s) 710
AjnI CCWGG 2 cut(s) 119, 1177
AjuI GAANNNNNNNTTGG 2 cut(s) 1088, 1120
AluBI AGCT 9 cut(s) 228, 412, 467, 557, 742, 932, 1027, 1156, 1202
AluI AGCT 9 cut(s) 228, 412, 467, 557, 742, 932, 1027, 1156, 1202
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 2 cut(s) 639, 793
AlwI GGATC 4 cut(s) 48, 175, 386, 724
AlwNI CAGNNNCTG 2 cut(s) 515, 866
AoxI GGCC 3 cut(s) 196, 777, 1011
ApeKI GCWGC 5 cut(s) 416, 584, 998, 1024, 1085
ApoI RAATTY 3 cut(s) 398, 494, 983
AspS9I GGNCC 3 cut(s) 196, 902, 965
AsuHPI GGTGA 3 cut(s) 100, 311, 1085
AvaII GGWCC 2 cut(s) 902, 965
BaeGI GKGCMC 1 cut(s) 246
BanII GRGCYC 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 5 cut(s) 403, 571, 985, 1036, 1072
BccI CCATC 7 cut(s) 151, 152, 872, 878, 880, 920, 959
BceAI ACGGC 2 cut(s) 998, 1073
BcgI CGANNNNNNTGC 2 cut(s) 977, 1011
BciT130I CCWGG 2 cut(s) 121, 1179
BcoDI GTCTC 2 cut(s) 639, 793
BfaI CTAG 3 cut(s) 171, 893, 1146
BfmI CTRYAG 1 cut(s) 184
BisI GCNGC 7 cut(s) 132, 199, 417, 585, 999, 1025, 1086
BlsI GCNGC 7 cut(s) 133, 200, 418, 586, 1000, 1026, 1087
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 2 cut(s) 121, 1179
Bme18I GGWCC 2 cut(s) 902, 965
BmeRI GACNNNNNGTC 1 cut(s) 710
BmgT120I GGNCC 3 cut(s) 196, 902, 965
BmiI GGNNCC 1 cut(s) 967
BmrFI CCNGG 2 cut(s) 121, 1179
BmsI GCATC 2 cut(s) 433, 829
BpuEI CTTGAG 1 cut(s) 1181
BsaJI CCNNGG 2 cut(s) 375, 969
BsaWI WCCGGW 1 cut(s) 1133
Bsc4I CCNNNNNNNGG 5 cut(s) 316, 338, 730, 957, 1178
BseBI CCWGG 2 cut(s) 121, 1179
BseDI CCNNGG 2 cut(s) 375, 969
BseGI GGATG 4 cut(s) 97, 654, 870, 891
BseLI CCNNNNNNNGG 5 cut(s) 316, 338, 730, 957, 1178
BseMII CTCAG 3 cut(s) 471, 723, 999
BseRI GAGGAG 2 cut(s) 746, 1083
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 5 cut(s) 403, 571, 985, 1036, 1072
BshFI GGCC 3 cut(s) 198, 779, 1013
BsiHKAI GWGCWC 1 cut(s) 469
BsiSI CCGG 1 cut(s) 1134
BslFI GGGAC 1 cut(s) 951
BslI CCNNNNNNNGG 5 cut(s) 316, 338, 730, 957, 1178
BsmAI GTCTC 2 cut(s) 639, 793
BsmFI GGGAC 1 cut(s) 951
BsnI GGCC 3 cut(s) 198, 779, 1013
Bsp1286I GDGCHC 2 cut(s) 246, 469
Bsp143I GATC 5 cut(s) 40, 73, 167, 391, 716
Bsp19I CCATGG 1 cut(s) 969
BspACI CCGC 5 cut(s) 38, 132, 199, 1041, 1140
BspANI GGCC 3 cut(s) 198, 779, 1013
BspCNI CTCAG 3 cut(s) 472, 722, 1000
BspLI GGNNCC 1 cut(s) 967
BspMAI CTGCAG 1 cut(s) 188
BspPI GGATC 4 cut(s) 48, 175, 386, 724
BssECI CCNNGG 2 cut(s) 375, 969
BssMI GATC 5 cut(s) 40, 73, 167, 391, 716
BssT1I CCWWGG 1 cut(s) 969
Bst2UI CCWGG 2 cut(s) 121, 1179
Bst4CI ACNGT 1 cut(s) 649
Bst6I CTCTTC 2 cut(s) 5, 375
BstC8I GCNNGC 3 cut(s) 414, 861, 1029
BstDEI CTNAG 5 cut(s) 219, 480, 709, 1008, 1037
BstDSI CCRYGG 1 cut(s) 969
BstENI CCTNNNNNAGG 1 cut(s) 728
BstF5I GGATG 4 cut(s) 97, 654, 870, 891
BstKTI GATC 5 cut(s) 43, 76, 170, 394, 719
BstMAI GTCTC 2 cut(s) 639, 793
BstMBI GATC 5 cut(s) 40, 73, 167, 391, 716
BstMWI GCNNNNNNNGC 4 cut(s) 241, 422, 464, 839
BstNI CCWGG 2 cut(s) 121, 1179
BstSCI CCNGG 2 cut(s) 119, 1177
BstSFI CTRYAG 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 246
BstV1I GCAGC 5 cut(s) 403, 571, 985, 1036, 1072
BstX2I RGATCY 3 cut(s) 40, 167, 716
BstYI RGATCY 3 cut(s) 40, 167, 716
BsuRI GGCC 3 cut(s) 198, 779, 1013
BtgI CCRYGG 1 cut(s) 969
BtsCI GGATG 4 cut(s) 97, 654, 870, 891
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 2 cut(s) 477, 864
Cac8I GCNNGC 3 cut(s) 414, 861, 1029
CaiI CAGNNNCTG 2 cut(s) 515, 866
Cfr13I GGNCC 3 cut(s) 196, 902, 965
Csp6I GTAC 2 cut(s) 151, 223
CspCI CAANNNNNGTGG 4 cut(s) 792, 827, 1045, 1080
CviAII CATG 4 cut(s) 470, 526, 763, 970
CviQI GTAC 2 cut(s) 151, 223
DdeI CTNAG 5 cut(s) 219, 480, 709, 1008, 1037
DpnI GATC 5 cut(s) 42, 75, 169, 393, 718
DpnII GATC 5 cut(s) 40, 73, 167, 391, 716
DriI GACNNNNNGTC 1 cut(s) 710
Eam1104I CTCTTC 2 cut(s) 5, 375
Eam1105I GACNNNNNGTC 1 cut(s) 710
EarI CTCTTC 2 cut(s) 5, 375
Ecl136II GAGCTC 1 cut(s) 467
Eco130I CCWWGG 1 cut(s) 969
Eco24I GRGCYC 1 cut(s) 469
Eco47I GGWCC 2 cut(s) 902, 965
Eco53kI GAGCTC 1 cut(s) 467
Eco57I CTGAAG 3 cut(s) 65, 354, 492
EcoICRI GAGCTC 1 cut(s) 467
EcoNI CCTNNNNNAGG 1 cut(s) 728
EcoRI GAATTC 1 cut(s) 983
EcoRII CCWGG 2 cut(s) 119, 1177
EcoT14I CCWWGG 1 cut(s) 969
EcoT38I GRGCYC 1 cut(s) 469
ErhI CCWWGG 1 cut(s) 969
FaeI CATG 4 cut(s) 473, 529, 766, 973
FaiI YATR 5 cut(s) 471, 527, 677, 764, 971
FalI AAGNNNNNCTT 4 cut(s) 212, 244, 731, 763
FaqI GGGAC 1 cut(s) 951
FatI CATG 4 cut(s) 469, 525, 762, 969
Fnu4HI GCNGC 7 cut(s) 132, 199, 417, 585, 999, 1025, 1086
FokI GGATG 4 cut(s) 104, 641, 857, 898
FriOI GRGCYC 1 cut(s) 469
Fsp4HI GCNGC 7 cut(s) 132, 199, 417, 585, 999, 1025, 1086
FspBI CTAG 3 cut(s) 171, 893, 1146
GluI GCNGC 7 cut(s) 132, 199, 417, 585, 999, 1025, 1086
HaeIII GGCC 3 cut(s) 198, 779, 1013
HapII CCGG 1 cut(s) 1134
Hin1II CATG 4 cut(s) 473, 529, 766, 973
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HindIII AAGCTT 3 cut(s) 410, 740, 1200
HinfI GANTC 7 cut(s) 124, 290, 632, 705, 908, 1076, 1182
HpaII CCGG 1 cut(s) 1134
HphI GGTGA 3 cut(s) 100, 311, 1085
Hpy166II GTNNAC 2 cut(s) 433, 652
Hpy188I TCNGA 5 cut(s) 45, 256, 452, 554, 716
Hpy8I GTNNAC 2 cut(s) 433, 652
Hpy99I CGWCG 3 cut(s) 10, 1094, 1199
HpyAV CCTTC 7 cut(s) 25, 40, 329, 457, 516, 526, 1090
HpyCH4III ACNGT 1 cut(s) 649
HpyCH4IV ACGT 2 cut(s) 81, 435
HpyCH4V TGCA 5 cut(s) 186, 323, 404, 529, 1031
HpyF10VI GCNNNNNNNGC 4 cut(s) 241, 422, 464, 839
HpyF3I CTNAG 5 cut(s) 219, 480, 709, 1008, 1037
HpySE526I ACGT 2 cut(s) 81, 435
Hsp92II CATG 4 cut(s) 473, 529, 766, 973
Kzo9I GATC 5 cut(s) 40, 73, 167, 391, 716
LmnI GCTCC 4 cut(s) 554, 804, 838, 1153
Lsp1109I GCAGC 5 cut(s) 403, 571, 985, 1036, 1072
LweI GCATC 2 cut(s) 433, 829
MaeI CTAG 3 cut(s) 171, 893, 1146
MaeII ACGT 2 cut(s) 81, 435
MaeIII GTNAC 5 cut(s) 188, 211, 756, 1051, 1073
MalI GATC 5 cut(s) 42, 75, 169, 393, 718
MboI GATC 5 cut(s) 40, 73, 167, 391, 716
MboII GAAGA 4 cut(s) 22, 392, 397, 711
MflI RGATCY 3 cut(s) 40, 167, 716
MhlI GDGCHC 2 cut(s) 246, 469
MluCI AATT 3 cut(s) 398, 494, 983
MlyI GAGTC 6 cut(s) 284, 641, 699, 902, 1070, 1191
MmeI TCCRAC 3 cut(s) 532, 574, 694
MseI TTAA 2 cut(s) 230, 438
MslI CAYNNNNRTG 1 cut(s) 974
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 1 cut(s) 1134
MspR9I CCNGG 2 cut(s) 121, 1179
MvaI CCWGG 2 cut(s) 121, 1179
MwoI GCNNNNNNNGC 4 cut(s) 241, 422, 464, 839
NcoI CCATGG 1 cut(s) 969
NdeII GATC 5 cut(s) 40, 73, 167, 391, 716
NlaIII CATG 4 cut(s) 473, 529, 766, 973
NlaIV GGNNCC 1 cut(s) 967
NmeAIII GCCGAG 1 cut(s) 400
NmuCI GTSAC 3 cut(s) 188, 756, 1073
PcsI WCGNNNNNNNCGW 1 cut(s) 1194
PfeI GAWTC 1 cut(s) 124
PflMI CCANNNNNTGG 2 cut(s) 316, 957
PfoI TCCNGGA 1 cut(s) 1177
PkrI GCNGC 7 cut(s) 133, 200, 418, 586, 1000, 1026, 1087
PleI GAGTC 6 cut(s) 284, 640, 699, 902, 1070, 1190
PpsI GAGTC 6 cut(s) 284, 640, 699, 902, 1070, 1190
Psp124BI GAGCTC 1 cut(s) 469
Psp1406I AACGTT 1 cut(s) 81
Psp6I CCWGG 2 cut(s) 119, 1177
PspGI CCWGG 2 cut(s) 119, 1177
PspN4I GGNNCC 1 cut(s) 967
PspPI GGNCC 3 cut(s) 196, 902, 965
PstI CTGCAG 1 cut(s) 188
PstNI CAGNNNCTG 2 cut(s) 515, 866
PsuI RGATCY 3 cut(s) 40, 167, 716
RsaI GTAC 2 cut(s) 152, 224
RsaNI GTAC 2 cut(s) 151, 223
RseI CAYNNNNRTG 1 cut(s) 974
SacI GAGCTC 1 cut(s) 469
SaqAI TTAA 2 cut(s) 230, 438
SatI GCNGC 7 cut(s) 132, 199, 417, 585, 999, 1025, 1086
Sau3AI GATC 5 cut(s) 40, 73, 167, 391, 716
Sau96I GGNCC 3 cut(s) 196, 902, 965
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 6 cut(s) 284, 641, 699, 902, 1070, 1191
ScrFI CCNGG 2 cut(s) 121, 1179
SduI GDGCHC 2 cut(s) 246, 469
SfaNI GCATC 2 cut(s) 433, 829
SfcI CTRYAG 1 cut(s) 184
SinI GGWCC 2 cut(s) 902, 965
SmiMI CAYNNNNRTG 1 cut(s) 974
SmlI CTYRAG 1 cut(s) 1160
SmoI CTYRAG 1 cut(s) 1160
Sse9I AATT 3 cut(s) 398, 494, 983
SsiI CCGC 5 cut(s) 38, 132, 199, 1041, 1140
SspMI CTAG 3 cut(s) 171, 893, 1146
SstI GAGCTC 1 cut(s) 469
StyD4I CCNGG 2 cut(s) 119, 1177
StyI CCWWGG 1 cut(s) 969
TaaI ACNGT 1 cut(s) 649
TaiI ACGT 2 cut(s) 84, 438
TaqI TCGA 3 cut(s) 987, 1092, 1194
TasI AATT 3 cut(s) 398, 494, 983
TatI WGTACW 2 cut(s) 150, 222
TauI GCSGC 2 cut(s) 134, 201
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 2 cut(s) 230, 438
Tru9I TTAA 2 cut(s) 230, 438
TscAI CASTG 2 cut(s) 484, 871
TseFI GTSAC 3 cut(s) 188, 756, 1073
TseI GCWGC 5 cut(s) 416, 584, 998, 1024, 1085
Tsp45I GTSAC 3 cut(s) 188, 756, 1073
TspRI CASTG 2 cut(s) 484, 871
Van91I CCANNNNNTGG 2 cut(s) 316, 957
VpaK11BI GGWCC 2 cut(s) 902, 965
XagI CCTNNNNNAGG 1 cut(s) 728
XapI RAATTY 3 cut(s) 398, 494, 983
XbaI TCTAGA 1 cut(s) 892
XspI CTAG 3 cut(s) 171, 893, 1146
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.