Prupe.4G133900_v2.0.a1

Belongs to the phosphoglycerate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0008242
Physical Location & Seq
Forward (+)
7408954 .. 7413177
4224 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G133900.2

Sequence Viewer

Length: 1206 bp
ATGGCGACCAAGAGGAGCGTGAGTACTTTGAAGGAGGCTGAGTTGAAGGGGAAGAGAGTGTTTGTGAGGGTTGATCTGAATGTTCCTTTGGATGACAACTCCAAAATCACTGATGATACTAGAGTCCGTGCTGCTGTGCCCACCATCAAGTACTTGCAGGGCCATGGTGCCAAAGTCATCCTCGCTTCTCACTTGGGACGTCCCAAGGGAGTCACTCCCAAGTACAGTTTGAAGCCTCTTGTGCCGAGGCTGTCTGAGCTCCTTGGAGTTGAGGTTAAGATTGCCAATGACTGTATAGGCGAGGAAGTTGAAAAATTGGTTGCTCAACTTCCAGACGGAGGAGTTTTGCTCCTTGAGAATGTTAGGTTCTACAAGGAGGAAGAGAAGAATGACCCTGAATTTTCCAAGAAGCTTGCTTCACTTGCAGATGTTTATGTGAATGATGCTTTTGGTACTGCTCATAGGGCTCATGCATCAACTGAGGGAGTGGCCAAGTTCTTAAAGCCTTCCGTTGCTGGATTCCTTATGCAGAAGGAACTCGATTATCTTGTTGGTGCTGTGGGAAATCCTAAGAGGCCATTTGCTGCTATTGTTGGTGGTTCAAAGGTGTCATCCAAGATTGGAGTGATAGAATCCTTGTTGGAGAAGGTTAACATTCTCTTGCTAGGTGGAGGAATGATCTTTACTTTCTACAAGGCCCAAGGTTATTCAGTTGGATCATCCCTTGTGGAGGAAGACAAGCTTGATCTTGCAAAATCACTTCTTGAGAAGGCCAAGGCTAAGGGGGTTTCTATTCTGCTCCCAACTGATGTAGTCATTGCTGACAAGTTTGCTGCTGATGCGAACAGCAAGGTTGTGCCAGCGTCTGCTATTCCAGATGGTTGGATGGGATTGGATATCGGACCAGACTCAATCAAAACTTTCAGTGAAGCTCTGGTTACCACTCAAACCATTATTTGGAATGGACCTATGGGTGTTTTTGAGTTTGAAAAGTTTGCTGCTGGGACTGAGGCAATAGCTAAGAAGCTTGCAGAGCTCAGCGACAAGGGGGTGACAACAATCATTGGAGGTGGTGACTCAGTTGCAGCTGTTGAGAAGGCTGGGCTTGCTGAGAAGATGAGCCACATCTCGACTGGAGGTGGTGCAAGCTTAGAGCTTCTCGAAGGGAAATCACTCCCTGGAGTCCTCGCACTTGACGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002237 GO:0003674 GO:0003824 GO:0004618 GO:0004672 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0016020 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016774 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019693 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0034284 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046939 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:0098588 GO:0098805 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PGK

Protein Analysis

402

Amino Acids

42.43

Weight (kDa)

6.29

Isoelectric Point (pI)

27.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 167
AccB7I CCANNNNNTGG 1 cut(s) 957
AclWI GGATC 1 cut(s) 724
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 1 cut(s) 398
AcyI GRCGYC 1 cut(s) 199
AfaI GTAC 4 cut(s) 25, 152, 224, 454
AfiI CCNNNNNNNGG 3 cut(s) 338, 730, 957
AgsI TTSAA 6 cut(s) 31, 46, 232, 311, 603, 989
AjnI CCWGG 1 cut(s) 1177
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
Alw21I GWGCWC 2 cut(s) 261, 1038
AlwI GGATC 1 cut(s) 724
AlwNI CAGNNNCTG 1 cut(s) 866
AoxI GGCC 5 cut(s) 160, 489, 575, 696, 771
ApeKI GCWGC 5 cut(s) 131, 584, 833, 998, 1085
ApoI RAATTY 1 cut(s) 398
AspS9I GGNCC 4 cut(s) 160, 697, 902, 965
AsuHPI GGTGA 2 cut(s) 1063, 1085
AvaII GGWCC 2 cut(s) 902, 965
BaeGI GKGCMC 1 cut(s) 141
BaeI ACNNNNGTAYC 2 cut(s) 108, 141
BalI TGGCCA 1 cut(s) 491
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 3 cut(s) 261, 469, 1038
BbsI GAAGAC 1 cut(s) 741
Bbv12I GWGCWC 2 cut(s) 261, 1038
BbvI GCAGC 5 cut(s) 118, 571, 820, 985, 1097
BccI CCATC 3 cut(s) 152, 872, 880
BciT130I CCWGG 1 cut(s) 1179
BfaI CTAG 2 cut(s) 120, 665
BisI GCNGC 5 cut(s) 132, 585, 834, 999, 1086
BlpI GCTNAGC 1 cut(s) 1037
BlsI GCNGC 5 cut(s) 133, 586, 835, 1000, 1087
BmcAI AGTACT 2 cut(s) 25, 152
Bme1390I CCNGG 1 cut(s) 1179
Bme18I GGWCC 2 cut(s) 902, 965
BmgT120I GGNCC 4 cut(s) 160, 697, 902, 965
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 1179
BmsI GCATC 4 cut(s) 433, 482, 829, 1189
BpiI GAAGAC 1 cut(s) 741
BplI GAGNNNNNCTC 2 cut(s) 333, 365
BpmI CTGGAG 2 cut(s) 1155, 1200
Bpu10I CCTNAGC 1 cut(s) 780
Bpu1102I GCTNAGC 1 cut(s) 1037
BpuEI CTTGAG 2 cut(s) 374, 785
BsaHI GRCGYC 1 cut(s) 199
BsaJI CCNNGG 7 cut(s) 163, 204, 245, 262, 700, 774, 1177
BsaXI ACNNNNNCTCC 6 cut(s) 7, 26, 37, 56, 258, 288
Bsc4I CCNNNNNNNGG 3 cut(s) 338, 730, 957
Bse1I ACTGG 1 cut(s) 1138
Bse3DI GCAATG 1 cut(s) 816
BseBI CCWGG 1 cut(s) 1179
BseDI CCNNGG 7 cut(s) 163, 204, 245, 262, 700, 774, 1177
BseGI GGATG 5 cut(s) 97, 177, 611, 719, 891
BseLI CCNNNNNNNGG 3 cut(s) 338, 730, 957
BseMI GCAATG 1 cut(s) 816
BseMII CTCAG 7 cut(s) 30, 246, 471, 999, 1051, 1092, 1101
BseNI ACTGG 1 cut(s) 1138
BseRI GAGGAG 2 cut(s) 28, 354
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 5 cut(s) 118, 571, 820, 985, 1097
BseYI CCCAGC 2 cut(s) 1001, 1100
BshFI GGCC 5 cut(s) 162, 491, 577, 698, 773
BshNI GGYRCC 1 cut(s) 167
BsiHKAI GWGCWC 2 cut(s) 261, 1038
BslFI GGGAC 3 cut(s) 186, 210, 1018
BslI CCNNNNNNNGG 3 cut(s) 338, 730, 957
BsmFI GGGAC 3 cut(s) 186, 210, 1018
BsnI GGCC 5 cut(s) 162, 491, 577, 698, 773
Bsp1286I GDGCHC 4 cut(s) 141, 261, 469, 1038
Bsp143I GATC 4 cut(s) 73, 678, 716, 745
Bsp1720I GCTNAGC 1 cut(s) 1037
Bsp19I CCATGG 1 cut(s) 163
BspANI GGCC 5 cut(s) 162, 491, 577, 698, 773
BspCNI CTCAG 7 cut(s) 31, 247, 472, 1000, 1050, 1091, 1102
BspLI GGNNCC 1 cut(s) 169
BspPI GGATC 1 cut(s) 724
BspT107I GGYRCC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 816
BsrI ACTGG 1 cut(s) 1138
BssECI CCNNGG 7 cut(s) 163, 204, 245, 262, 700, 774, 1177
BssMI GATC 4 cut(s) 73, 678, 716, 745
BssNI GRCGYC 1 cut(s) 199
BssT1I CCWWGG 5 cut(s) 163, 204, 262, 700, 774
Bst2UI CCWGG 1 cut(s) 1179
Bst4CI ACNGT 2 cut(s) 227, 293
Bst6I CTCTTC 2 cut(s) 47, 375
BstACI GRCGYC 1 cut(s) 199
BstC8I GCNNGC 5 cut(s) 414, 861, 1029, 1107, 1147
BstDSI CCRYGG 1 cut(s) 163
BstEII GGTNACC 1 cut(s) 937
BstENI CCTNNNNNAGG 1 cut(s) 728
BstF5I GGATG 5 cut(s) 97, 177, 611, 719, 891
BstKTI GATC 4 cut(s) 76, 681, 719, 748
BstMBI GATC 4 cut(s) 73, 678, 716, 745
BstMWI GCNNNNNNNGC 7 cut(s) 241, 256, 422, 464, 839, 1033, 1106
BstNI CCWGG 1 cut(s) 1179
BstPI GGTNACC 1 cut(s) 937
BstSCI CCNGG 1 cut(s) 1177
BstSLI GKGCMC 1 cut(s) 141
BstV1I GCAGC 5 cut(s) 118, 571, 820, 985, 1097
BstV2I GAAGAC 1 cut(s) 741
BstXI CCANNNNNNTGG 1 cut(s) 882
BsuRI GGCC 5 cut(s) 162, 491, 577, 698, 773
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 5 cut(s) 97, 177, 611, 719, 891
BtsIMutI CAGTG 2 cut(s) 108, 931
Cac8I GCNNGC 5 cut(s) 414, 861, 1029, 1107, 1147
CaiI CAGNNNCTG 1 cut(s) 866
Cfr13I GGNCC 4 cut(s) 160, 697, 902, 965
CseI GACGC 1 cut(s) 852
Csp6I GTAC 4 cut(s) 24, 151, 223, 453
CviAII CATG 2 cut(s) 164, 470
CviQI GTAC 4 cut(s) 24, 151, 223, 453
DpnI GATC 4 cut(s) 75, 680, 718, 747
DpnII GATC 4 cut(s) 73, 678, 716, 745
EaeI YGGCCR 1 cut(s) 489
Eam1104I CTCTTC 2 cut(s) 47, 375
EarI CTCTTC 2 cut(s) 47, 375
Ecl136II GAGCTC 2 cut(s) 259, 1036
Eco130I CCWWGG 5 cut(s) 163, 204, 262, 700, 774
Eco24I GRGCYC 3 cut(s) 261, 469, 1038
Eco32I GATATC 1 cut(s) 898
Eco47I GGWCC 2 cut(s) 902, 965
Eco53kI GAGCTC 2 cut(s) 259, 1036
Eco91I GGTNACC 1 cut(s) 937
EcoICRI GAGCTC 2 cut(s) 259, 1036
EcoNI CCTNNNNNAGG 1 cut(s) 728
EcoO65I GGTNACC 1 cut(s) 937
EcoRII CCWGG 1 cut(s) 1177
EcoRV GATATC 1 cut(s) 898
EcoT14I CCWWGG 5 cut(s) 163, 204, 262, 700, 774
EcoT22I ATGCAT 1 cut(s) 475
EcoT38I GRGCYC 3 cut(s) 261, 469, 1038
ErhI CCWWGG 5 cut(s) 163, 204, 262, 700, 774
FaeI CATG 2 cut(s) 167, 473
FaiI YATR 7 cut(s) 165, 296, 435, 462, 471, 527, 971
FalI AAGNNNNNCTT 2 cut(s) 726, 758
FaqI GGGAC 3 cut(s) 186, 210, 1018
FatI CATG 2 cut(s) 163, 469
Fnu4HI GCNGC 5 cut(s) 132, 585, 834, 999, 1086
FokI GGATG 5 cut(s) 104, 164, 598, 706, 898
FriOI GRGCYC 3 cut(s) 261, 469, 1038
Fsp4HI GCNGC 5 cut(s) 132, 585, 834, 999, 1086
FspBI CTAG 2 cut(s) 120, 665
GluI GCNGC 5 cut(s) 132, 585, 834, 999, 1086
GsaI CCCAGC 2 cut(s) 1005, 1104
GsuI CTGGAG 2 cut(s) 1155, 1200
HaeIII GGCC 5 cut(s) 162, 491, 577, 698, 773
HgaI GACGC 1 cut(s) 852
Hin1I GRCGYC 1 cut(s) 199
Hin1II CATG 2 cut(s) 167, 473
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HindIII AAGCTT 4 cut(s) 410, 740, 1025, 1147
HinfI GANTC 7 cut(s) 123, 210, 519, 632, 908, 1076, 1182
HpaI GTTAAC 1 cut(s) 652
HphI GGTGA 2 cut(s) 1063, 1085
Hpy166II GTNNAC 1 cut(s) 652
Hpy188I TCNGA 3 cut(s) 78, 256, 902
Hpy188III TCNNGA 5 cut(s) 332, 764, 875, 1129, 1160
Hpy8I GTNNAC 1 cut(s) 652
HpyAV CCTTC 8 cut(s) 25, 40, 516, 526, 640, 763, 1090, 1157
HpyCH4III ACNGT 2 cut(s) 227, 293
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 8 cut(s) 157, 425, 473, 529, 752, 1031, 1085, 1145
HpyF10VI GCNNNNNNNGC 7 cut(s) 241, 256, 422, 464, 839, 1033, 1106
HpySE526I ACGT 1 cut(s) 199
Hsp92I GRCGYC 1 cut(s) 199
Hsp92II CATG 2 cut(s) 167, 473
KspAI GTTAAC 1 cut(s) 652
Kzo9I GATC 4 cut(s) 73, 678, 716, 745
LmnI GCTCC 4 cut(s) 15, 264, 354, 804
Lsp1109I GCAGC 5 cut(s) 118, 571, 820, 985, 1097
LweI GCATC 4 cut(s) 433, 482, 829, 1189
MaeI CTAG 2 cut(s) 120, 665
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 4 cut(s) 211, 937, 1051, 1073
MalI GATC 4 cut(s) 75, 680, 718, 747
MboI GATC 4 cut(s) 73, 678, 716, 745
MboII GAAGA 5 cut(s) 64, 392, 397, 746, 1126
MhlI GDGCHC 4 cut(s) 141, 261, 469, 1038
MlsI TGGCCA 1 cut(s) 491
MluCI AATT 2 cut(s) 314, 398
MluNI TGGCCA 1 cut(s) 491
MlyI GAGTC 5 cut(s) 132, 219, 902, 1070, 1191
MmeI TCCRAC 3 cut(s) 621, 694, 863
Mox20I TGGCCA 1 cut(s) 491
Mph1103I ATGCAT 1 cut(s) 475
MscI TGGCCA 1 cut(s) 491
MseI TTAA 3 cut(s) 276, 500, 651
Msp20I TGGCCA 1 cut(s) 491
MspA1I CMGCKG 1 cut(s) 1088
MspR9I CCNGG 1 cut(s) 1179
MvaI CCWGG 1 cut(s) 1179
MwoI GCNNNNNNNGC 7 cut(s) 241, 256, 422, 464, 839, 1033, 1106
NcoI CCATGG 1 cut(s) 163
NdeII GATC 4 cut(s) 73, 678, 716, 745
NlaIII CATG 2 cut(s) 167, 473
NlaIV GGNNCC 1 cut(s) 169
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 3 cut(s) 211, 1051, 1073
NsiI ATGCAT 1 cut(s) 475
PcsI WCGNNNNNNNCGW 1 cut(s) 1194
PfeI GAWTC 2 cut(s) 519, 632
PflMI CCANNNNNTGG 1 cut(s) 957
PkrI GCNGC 5 cut(s) 133, 586, 835, 1000, 1087
PleI GAGTC 5 cut(s) 131, 218, 902, 1070, 1190
PpsI GAGTC 5 cut(s) 131, 218, 902, 1070, 1190
Psp124BI GAGCTC 2 cut(s) 261, 1038
Psp6I CCWGG 1 cut(s) 1177
PspEI GGTNACC 1 cut(s) 937
PspFI CCCAGC 2 cut(s) 1001, 1100
PspGI CCWGG 1 cut(s) 1177
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 4 cut(s) 160, 697, 902, 965
PstNI CAGNNNCTG 1 cut(s) 866
PvuII CAGCTG 1 cut(s) 1088
RsaI GTAC 4 cut(s) 25, 152, 224, 454
RsaNI GTAC 4 cut(s) 24, 151, 223, 453
SacI GAGCTC 2 cut(s) 261, 1038
SaqAI TTAA 3 cut(s) 276, 500, 651
SatI GCNGC 5 cut(s) 132, 585, 834, 999, 1086
Sau3AI GATC 4 cut(s) 73, 678, 716, 745
Sau96I GGNCC 4 cut(s) 160, 697, 902, 965
ScaI AGTACT 2 cut(s) 25, 152
SchI GAGTC 5 cut(s) 132, 219, 902, 1070, 1191
ScrFI CCNGG 1 cut(s) 1179
SduI GDGCHC 4 cut(s) 141, 261, 469, 1038
SfaNI GCATC 4 cut(s) 433, 482, 829, 1189
SinI GGWCC 2 cut(s) 902, 965
SmlI CTYRAG 2 cut(s) 353, 764
SmoI CTYRAG 2 cut(s) 353, 764
Sse9I AATT 2 cut(s) 314, 398
SspMI CTAG 2 cut(s) 120, 665
SstI GAGCTC 2 cut(s) 261, 1038
StyD4I CCNGG 1 cut(s) 1177
StyI CCWWGG 5 cut(s) 163, 204, 262, 700, 774
TaaI ACNGT 2 cut(s) 227, 293
TaiI ACGT 1 cut(s) 202
TaqI TCGA 3 cut(s) 540, 1130, 1161
TasI AATT 2 cut(s) 314, 398
TatI WGTACW 3 cut(s) 23, 150, 222
TfiI GAWTC 2 cut(s) 519, 632
Tru1I TTAA 3 cut(s) 276, 500, 651
Tru9I TTAA 3 cut(s) 276, 500, 651
TscAI CASTG 2 cut(s) 115, 931
TseFI GTSAC 3 cut(s) 211, 1051, 1073
TseI GCWGC 5 cut(s) 131, 584, 833, 998, 1085
Tsp45I GTSAC 3 cut(s) 211, 1051, 1073
TspGWI ACGGA 3 cut(s) 116, 351, 499
TspRI CASTG 2 cut(s) 115, 931
Van91I CCANNNNNTGG 1 cut(s) 957
VpaK11BI GGWCC 2 cut(s) 902, 965
XagI CCTNNNNNAGG 1 cut(s) 728
XapI RAATTY 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 1130
XspI CTAG 2 cut(s) 120, 665
ZraI GACGTC 1 cut(s) 200
ZrmI AGTACT 2 cut(s) 25, 152
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.