RLG00000021459

Belongs to the phosphoglycerate kinase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
75611152 .. 75611839
688 bp
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UTR
Exon/CDS
Intron
RLM00000021459

Sequence Viewer

Length: 600 bp
ATGCAGAAGGAACTTGAACATCTTCTTGTTGCTGTGGGAAATCCCAAGAAACCATTTGCTGCTATTGTTGGTGGCTCGAACCGTTCATCCAAGATTAGAGTGATGAAGTACTTACTGGATAAGGTTTATATCCTATTGTTGGGTGGAGGACTGATCTTTACCTTTTACAGGGCACAAGGACTTTCCATCGGATCTTCCCTTGTTGAGAAAAACATGCTAAATGCTGCAAATTCACTTATGGAGAAGGCAAAGAGTAAGGGAGTTCGTGTTCTGCTCCTAGAGGATGTGGTTATAGCAGATAAGTTTGCTAATGATGCCAATACTCTAGACAATGCTTATTCTGTCATCTGGATTGGACCAATAGGTCTGATCAAGTTTGAAACGTTTGCTGCTAGTTCTGTGGCGATTGCTGAGAAACTTGCACAGCTAAGTAACAAGAAAGTTATGACTATTGTTCGAGGTGGTGACACTGTTGCTGCTGTGAAGAAGGCAGGCTTTGCTGGCATAATGAGCCACGTTTCAATAGGAGATGGTGCAAGCTGCTTGGAGCTTCTTGAAGGGAAAGCCCTCCCTGGAATCCTTGCTTTTGATGATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002237 GO:0003674 GO:0003824 GO:0004618 GO:0004672 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0016020 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016774 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019693 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0034284 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046939 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:0098588 GO:0098805 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901700
Pfam Domains
Protein Families

Protein Analysis

200

Amino Acids

21.13

Weight (kDa)

9.26

Isoelectric Point (pI)

19.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGK PF00162 1 - 106 1.8e-28 Phosphoglycerate kinase
PGK PF00162 107 - 188 4.8e-19 Phosphoglycerate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 363
AclI AACGTT 1 cut(s) 383
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 229
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 139, 168
AgsI TTSAA 4 cut(s) 17, 380, 522, 557
AjnI CCWGG 1 cut(s) 571
AloI GAACNNNNNNTCC 4 cut(s) 71, 103, 252, 284
AluBI AGCT 3 cut(s) 427, 540, 550
AluI AGCT 3 cut(s) 427, 540, 550
AlwI GGATC 1 cut(s) 199
ApeKI GCWGC 5 cut(s) 59, 224, 389, 476, 540
ApoI RAATTY 1 cut(s) 229
Asp700I GAANNNNTTC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 356
AsuHPI GGTGA 1 cut(s) 476
AvaII GGWCC 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 175
BbvI GCAGC 5 cut(s) 46, 211, 376, 463, 527
BccI CCATC 2 cut(s) 194, 524
BciT130I CCWGG 1 cut(s) 573
BclI TGATCA 1 cut(s) 369
BfaI CTAG 3 cut(s) 278, 326, 393
BisI GCNGC 5 cut(s) 60, 225, 390, 477, 541
BlsI GCNGC 5 cut(s) 61, 226, 391, 478, 542
BmcAI AGTACT 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 573
Bme18I GGWCC 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 356
BmrFI CCNGG 1 cut(s) 573
BmsI GCATC 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 571
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 168
Bse1I ACTGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 1 cut(s) 571
BseGI GGATG 2 cut(s) 86, 289
BseLI CCNNNNNNNGG 2 cut(s) 139, 168
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 120
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 5 cut(s) 46, 211, 376, 463, 527
BslI CCNNNNNNNGG 2 cut(s) 139, 168
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 3 cut(s) 153, 191, 369
BspCNI CTCAG 1 cut(s) 403
BspPI GGATC 1 cut(s) 199
BsrI ACTGG 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 571
BssMI GATC 3 cut(s) 153, 191, 369
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 2 cut(s) 83, 472
BstAPI GCANNNNNTGC 1 cut(s) 497
BstC8I GCNNGC 3 cut(s) 493, 502, 538
BstDEI CTNAG 2 cut(s) 411, 428
BstENI CCTNNNNNAGG 1 cut(s) 166
BstF5I GGATG 2 cut(s) 86, 289
BstKTI GATC 3 cut(s) 156, 194, 372
BstMBI GATC 3 cut(s) 153, 191, 369
BstMWI GCNNNNNNNGC 4 cut(s) 314, 497, 501, 510
BstNI CCWGG 1 cut(s) 573
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 571
BstSLI GKGCMC 1 cut(s) 175
BstV1I GCAGC 5 cut(s) 46, 211, 376, 463, 527
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BtsCI GGATG 2 cut(s) 86, 289
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 3 cut(s) 493, 502, 538
Cfr13I GGNCC 1 cut(s) 356
Csp6I GTAC 1 cut(s) 109
CviAII CATG 1 cut(s) 214
CviJI RGCY 7 cut(s) 75, 427, 495, 513, 540, 550, 566
CviKI_1 RGCY 7 cut(s) 75, 427, 495, 513, 540, 550, 566
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 2 cut(s) 411, 428
DpnI GATC 3 cut(s) 155, 193, 371
DpnII GATC 3 cut(s) 153, 191, 369
DrdI GACNNNNNNGTC 1 cut(s) 363
DseDI GACNNNNNNGTC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 356
EcoNI CCTNNNNNAGG 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 571
FaeI CATG 1 cut(s) 217
FaiI YATR 6 cut(s) 129, 215, 239, 293, 446, 506
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FatI CATG 1 cut(s) 213
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 5 cut(s) 60, 225, 390, 477, 541
FokI GGATG 2 cut(s) 73, 296
Fsp4HI GCNGC 5 cut(s) 60, 225, 390, 477, 541
FspBI CTAG 3 cut(s) 278, 326, 393
GluI GCNGC 5 cut(s) 60, 225, 390, 477, 541
Hin1II CATG 1 cut(s) 217
HinfI GANTC 1 cut(s) 576
HphI GGTGA 1 cut(s) 476
Hpy188I TCNGA 2 cut(s) 191, 369
Hpy188III TCNNGA 3 cut(s) 326, 349, 554
HpyAV CCTTC 3 cut(s) 238, 481, 551
HpyCH4III ACNGT 2 cut(s) 83, 472
HpyCH4IV ACGT 2 cut(s) 383, 516
HpyCH4V TGCA 4 cut(s) 4, 227, 422, 536
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 497, 501, 510
HpyF3I CTNAG 2 cut(s) 411, 428
HpySE526I ACGT 2 cut(s) 383, 516
Hsp92II CATG 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 3 cut(s) 153, 191, 369
LmnI GCTCC 2 cut(s) 279, 547
LpnPI CCDG 7 cut(s) 101, 154, 334, 477, 486, 558, 585
Lsp1109I GCAGC 5 cut(s) 46, 211, 376, 463, 527
LweI GCATC 1 cut(s) 304
MaeI CTAG 3 cut(s) 278, 326, 393
MaeII ACGT 2 cut(s) 383, 516
MaeIII GTNAC 2 cut(s) 431, 464
MalI GATC 3 cut(s) 155, 193, 371
MboI GATC 3 cut(s) 153, 191, 369
MboII GAAGA 3 cut(s) 14, 186, 496
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 1 cut(s) 229
MnlI CCTC 4 cut(s) 140, 274, 452, 578
MroXI GAANNNNTTC 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 573
MvaI CCWGG 1 cut(s) 573
MwoI GCNNNNNNNGC 4 cut(s) 314, 497, 501, 510
NdeII GATC 3 cut(s) 153, 191, 369
NlaIII CATG 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 464
NspI RCATGY 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 576
PkrI GCNGC 5 cut(s) 61, 226, 391, 478, 542
Psp1406I AACGTT 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 571
PspGI CCWGG 1 cut(s) 571
PspPI GGNCC 1 cut(s) 356
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SatI GCNGC 5 cut(s) 60, 225, 390, 477, 541
Sau3AI GATC 3 cut(s) 153, 191, 369
Sau96I GGNCC 1 cut(s) 356
ScaI AGTACT 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 573
SduI GDGCHC 1 cut(s) 175
SetI ASST 9 cut(s) 126, 164, 367, 386, 429, 463, 519, 542, 552
SfaNI GCATC 1 cut(s) 304
SinI GGWCC 1 cut(s) 356
Sse9I AATT 1 cut(s) 229
SspMI CTAG 3 cut(s) 278, 326, 393
StyD4I CCNGG 1 cut(s) 571
TaaI ACNGT 2 cut(s) 83, 472
TaiI ACGT 2 cut(s) 386, 519
TaqI TCGA 2 cut(s) 77, 457
TasI AATT 1 cut(s) 229
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 1 cut(s) 576
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 5 cut(s) 59, 224, 389, 476, 540
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 2 cut(s) 75, 119
TspRI CASTG 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 356
XagI CCTNNNNNAGG 1 cut(s) 166
XapI RAATTY 1 cut(s) 229
XbaI TCTAGA 1 cut(s) 325
XceI RCATGY 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 3 cut(s) 278, 326, 393
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.