Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008242

Physical Location & Seq

Genomic Coordinates Forward (+)

82982037 .. 82982396

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG597500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCAGAAGGAACTTGAACATCTTCTTGTTGCTGTGGCGAATCCCAAGAAACCATTTGCTGCTATTGTTGGTGGCACGAACCTTTCATCCAAGATTGGAGTGATGGAGTACTTACTGGATAAGGTTGATATCCTATTGTTGGGTGGAGGACTGATCTTTACCTTTTACAGGGCACAAGGACTTTCCATCGGATCTTCCCTTGTTGAGAAAAACATGCTAGATGCTGCAAATTCACTTATAGAGAAGGCAAAGAATAAGGGAGTTCGTGTTCTGCTCCCAGAGGATGTGGTTATAGCAGATAAGTTTGATGCTTATGGCAACAGTGCGGTGGTGTCAATGTCTGCCATTCCAGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0004618 GO:0004672 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0016020 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016774 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019693 GO:0019752 GO:0030054 GO:0031090 GO:0032787 GO:0034284 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046939 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:0098588 GO:0098805 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PGK

Protein Analysis

119

Amino Acids

12.69

Weight (kDa)

5.34

Isoelectric Point (pI)

23.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGK	PF00162	1 - 119	3e-34	Phosphoglycerate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79550 AT1G79550
fragaria_vesca	FvH4_3g14961 FvH4_3g14961 FvH4_3g14961
malus_domestica	MD05G1234200.v1.1 MD10G1210600.v1.1
prunus_persica	Prupe.4G133900_v2.0.a1 Prupe.4G133900_v2.0.a1
pyrus_communis	pycom05g21160 pycom10g17880
rosa_chinensis	RchiOBHm_Chr5g0024551
rosa_laevigata	RLG00000021459 RLG00000032806
rosa_multiflora	Rmu_sc0005699.1_g000008
rosa_roxburghii	Rroxscaffold_1G00054690
rosa_rugosa	Rorug05G0083900
rosa_samantha	Rh2DG597500 Rh5AG175600 Rh5BG173000 Rh5CG189000 Rh5DG174700
rosa_wichuraiana	Rw5G015870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	229
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	139, 168
AgsI	TTSAA	1 cut(s)	17
AloI	GAACNNNNNNTCC	4 cut(s)	71, 103, 252, 284
AlwI	GGATC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	59, 224
ApoI	RAATTY	1 cut(s)	229
Asp700I	GAANNNNTTC	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	46, 211
BccI	CCATC	2 cut(s)	97, 194
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	2 cut(s)	60, 225
BlsI	GCNGC	2 cut(s)	61, 226
BmcAI	AGTACT	1 cut(s)	110
BmsI	GCATC	2 cut(s)	211, 298
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 168
Bse1I	ACTGG	1 cut(s)	120
BseGI	GGATG	2 cut(s)	86, 289
BseLI	CCNNNNNNNGG	2 cut(s)	139, 168
BseNI	ACTGG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	46, 211
BslI	CCNNNNNNNGG	2 cut(s)	139, 168
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	153, 191
BspACI	CCGC	1 cut(s)	326
BspPI	GGATC	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	120
BssMI	GATC	2 cut(s)	153, 191
Bst4CI	ACNGT	1 cut(s)	323
BstENI	CCTNNNNNAGG	1 cut(s)	166
BstF5I	GGATG	2 cut(s)	86, 289
BstKTI	GATC	2 cut(s)	156, 194
BstMBI	GATC	2 cut(s)	153, 191
BstNSI	RCATGY	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	2 cut(s)	46, 211
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	86, 289
BtsIMutI	CAGTG	1 cut(s)	328
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	1 cut(s)	214
CviQI	GTAC	1 cut(s)	109
DpnI	GATC	2 cut(s)	155, 193
DpnII	GATC	2 cut(s)	153, 191
Eco32I	GATATC	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	166
EcoRV	GATATC	1 cut(s)	130
FaeI	CATG	1 cut(s)	217
FaiI	YATR	4 cut(s)	215, 239, 293, 315
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	60, 225
FokI	GGATG	2 cut(s)	73, 296
Fsp4HI	GCNGC	2 cut(s)	60, 225
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	2 cut(s)	60, 225
Hin1II	CATG	1 cut(s)	217
HinfI	GANTC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	1 cut(s)	350
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4V	TGCA	2 cut(s)	4, 227
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	153, 191
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	3 cut(s)	101, 154, 291
Lsp1109I	GCAGC	2 cut(s)	46, 211
LweI	GCATC	2 cut(s)	211, 298
MaeI	CTAG	1 cut(s)	218
MalI	GATC	2 cut(s)	155, 193
MboI	GATC	2 cut(s)	153, 191
MboII	GAAGA	2 cut(s)	14, 186
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	1 cut(s)	229
MnlI	CCTC	2 cut(s)	140, 274
MroXI	GAANNNNTTC	1 cut(s)	21
NdeII	GATC	2 cut(s)	153, 191
NlaIII	CATG	1 cut(s)	217
NspI	RCATGY	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	61, 226
PsuI	RGATCY	1 cut(s)	191
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SatI	GCNGC	2 cut(s)	60, 225
Sau3AI	GATC	2 cut(s)	153, 191
ScaI	AGTACT	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	3 cut(s)	84, 126, 164
SfaNI	GCATC	2 cut(s)	211, 298
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	1 cut(s)	326
SspMI	CTAG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	323
TasI	AATT	1 cut(s)	229
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	40
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	2 cut(s)	59, 224
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	328
XagI	CCTNNNNNAGG	1 cut(s)	166
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	21
XspI	CTAG	1 cut(s)	218
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.