AT1G79800

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016703
Physical Location & Seq
Forward (+)
30018490 .. 30019315
826 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79800.1

Sequence Viewer

Length: 579 bp
ATGATGATGATGATGATGAGATCTACTTGTAATCTAACACTAATGCTCTGCATTTGTGCCCTTGTGGTGGCTTCCATGGCGGCGGAAGGTCCTAGGGATTTCAAGGTTGGAGACGAGTTCGGGTGGAGAGTCCCACTCCAGAATGATTCAGCGGTTTACAGCCACTGGGCCAGCAGCAACCGCTTCCACATCGGTGATTCACTCTCGTTTGTGTACGACAAGGACTCGGTGATGGAGGTAGACAAATGGGGTTTCTACCACTGCAACGGCAGCGATCCCATTACAGCCTTTGACAATGGAAACAGCACATTCGACCTTGATCGTCCTGGTCTCTTCTACTTCATCAGCGGCTCCAACCAGCACTGCACCAGCGGCCAGCGTCTCATCGTAGAAGTCATGCATATCCACCAACACCATGACCATGACGCTTCCATGCCTCCATCCATGTCGCCTCTTTCTAATTCTGCCTCTCCCTACGCATCCGCATCCGCATCTTCTGCTGCCTCCTCCCTGCCTACGGCTTGTCTTCTTATTCCTCTTTTCTTAACCATTGCTAGCTTTCGTTTCATTTCTTATTAG

Protein Analysis

192

Amino Acids

21.2

Weight (kDa)

5.59

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 47 - 126 3.7e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016703)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79800
fragaria_vesca FvH4_6g32140
malus_domestica MD09G1206100.v1.1
prunus_persica Prupe.3G061700_v2.0.a1 Prupe.3G062100_v2.0.a1
pyrus_communis pycom09g12290
rosa_laevigata RLG00000019843
rosa_roxburghii Rroxscaffold_2G00105130
rosa_rugosa Rorug02G0360500
rosa_samantha Rh2AG411200 Rh2BG421400 Rh2CG397300 Rh2DG430900
rosa_wichuraiana Rw2G033680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 240
AciI CCGC 8 cut(s) 80, 83, 152, 181, 348, 372, 483, 489
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 1 cut(s) 373
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 67, 517
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 1 cut(s) 325
AleI CACNNNNGTG 1 cut(s) 192
AluBI AGCT 1 cut(s) 558
AluI AGCT 1 cut(s) 558
Alw26I GTCTC 3 cut(s) 105, 335, 386
AlwI GGATC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 165
AoxI GGCC 2 cut(s) 168, 373
ApeKI GCWGC 3 cut(s) 174, 270, 500
AspA2I CCTAGG 1 cut(s) 92
AspS9I GGNCC 2 cut(s) 89, 168
AsuHPI GGTGA 2 cut(s) 206, 241
AsuNHI GCTAGC 1 cut(s) 554
AvaII GGWCC 1 cut(s) 89
AvrII CCTAGG 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 518
BbvI GCAGC 3 cut(s) 186, 282, 487
BccI CCATC 2 cut(s) 226, 448
BceAI ACGGC 2 cut(s) 283, 534
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 3 cut(s) 105, 335, 386
BfaI CTAG 2 cut(s) 93, 555
BglII AGATCT 1 cut(s) 20
BisI GCNGC 6 cut(s) 81, 175, 271, 349, 373, 501
BlnI CCTAGG 1 cut(s) 92
BlsI GCNGC 6 cut(s) 82, 176, 272, 350, 374, 502
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 2 cut(s) 89, 168
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 327
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 3 cut(s) 488, 494, 500
BmtI GCTAGC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 518
BplI GAGNNNNNCTC 2 cut(s) 120, 152
BpmI CTGGAG 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 75, 92
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 517
Bse1I ACTGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 549
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 75, 92
BseGI GGATG 3 cut(s) 440, 479, 485
BseLI CCNNNNNNNGG 2 cut(s) 67, 517
BseMI GCAATG 1 cut(s) 549
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 496
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 3 cut(s) 186, 282, 487
BsgI GTGCAG 1 cut(s) 349
BshFI GGCC 2 cut(s) 170, 375
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 67, 517
BsmAI GTCTC 3 cut(s) 105, 335, 386
BsmBI CGTCTC 2 cut(s) 105, 386
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 2 cut(s) 170, 375
Bso31I GGTCTC 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 3 cut(s) 20, 274, 319
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 8 cut(s) 80, 83, 152, 181, 348, 372, 483, 489
BspANI GGCC 2 cut(s) 170, 375
BspLI GGNNCC 1 cut(s) 352
BspOI GCTAGC 1 cut(s) 558
BspPI GGATC 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 549
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 75, 92
BssMI GATC 3 cut(s) 20, 274, 319
BssT1I CCWWGG 2 cut(s) 75, 92
Bst2UI CCWGG 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 338
BstAPI GCANNNNNTGC 1 cut(s) 497
BstC8I GCNNGC 3 cut(s) 172, 377, 556
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 3 cut(s) 440, 479, 485
BstKTI GATC 3 cut(s) 23, 277, 322
BstMAI GTCTC 3 cut(s) 105, 335, 386
BstMBI GATC 3 cut(s) 20, 274, 319
BstMWI GCNNNNNNNGC 5 cut(s) 77, 180, 270, 372, 497
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstSLI GKGCMC 1 cut(s) 61
BstV1I GCAGC 3 cut(s) 186, 282, 487
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 2 cut(s) 170, 375
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 3 cut(s) 440, 479, 485
BtsI GCAGTG 2 cut(s) 259, 361
BtsIMutI CAGTG 3 cut(s) 163, 259, 361
Cac8I GCNNGC 3 cut(s) 172, 377, 556
CaiI CAGNNNCTG 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 89, 168
CseI GACGC 2 cut(s) 368, 434
Csp6I GTAC 1 cut(s) 214
CviAII CATG 6 cut(s) 76, 397, 416, 422, 433, 445
CviJI RGCY 8 cut(s) 71, 162, 170, 287, 351, 375, 521, 558
CviKI_1 RGCY 8 cut(s) 71, 162, 170, 287, 351, 375, 521, 558
CviQI GTAC 1 cut(s) 214
DpnI GATC 3 cut(s) 22, 276, 321
DpnII GATC 3 cut(s) 20, 274, 319
EaeI YGGCCR 1 cut(s) 373
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
EciI GGCGGA 1 cut(s) 98
Eco130I CCWWGG 2 cut(s) 75, 92
Eco31I GGTCTC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 2 cut(s) 75, 92
EcoT22I ATGCAT 1 cut(s) 402
ErhI CCWWGG 2 cut(s) 75, 92
Esp3I CGTCTC 2 cut(s) 105, 386
FaeI CATG 6 cut(s) 79, 400, 419, 425, 436, 448
FaiI YATR 7 cut(s) 77, 398, 402, 417, 423, 434, 446
FaqI GGGAC 1 cut(s) 116
FatI CATG 6 cut(s) 75, 396, 415, 421, 432, 444
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 6 cut(s) 81, 175, 271, 349, 373, 501
FokI GGATG 3 cut(s) 427, 466, 472
Fsp4HI GCNGC 6 cut(s) 81, 175, 271, 349, 373, 501
FspBI CTAG 2 cut(s) 93, 555
GluI GCNGC 6 cut(s) 81, 175, 271, 349, 373, 501
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 2 cut(s) 170, 375
HgaI GACGC 2 cut(s) 368, 434
Hin1II CATG 6 cut(s) 79, 400, 419, 425, 436, 448
HinfI GANTC 4 cut(s) 129, 146, 197, 224
HphI GGTGA 2 cut(s) 206, 241
Hpy166II GTNNAC 3 cut(s) 157, 214, 241
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 3 cut(s) 157, 214, 241
HpyAV CCTTC 1 cut(s) 80
HpyCH4V TGCA 4 cut(s) 51, 264, 366, 400
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 180, 270, 372, 497
Hsp92II CATG 6 cut(s) 79, 400, 419, 425, 436, 448
Kzo9I GATC 3 cut(s) 20, 274, 319
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 9 cut(s) 151, 152, 184, 312, 339, 371, 382, 389, 524
Lsp1109I GCAGC 3 cut(s) 186, 282, 487
LweI GCATC 3 cut(s) 488, 494, 500
MaeI CTAG 2 cut(s) 93, 555
MalI GATC 3 cut(s) 22, 276, 321
MboI GATC 3 cut(s) 20, 274, 319
MboII GAAGA 3 cut(s) 325, 486, 518
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 1 cut(s) 460
MlyI GAGTC 2 cut(s) 138, 218
MmeI TCCRAC 2 cut(s) 88, 378
MnlI CCTC 7 cut(s) 229, 447, 462, 478, 514, 517, 546
Mph1103I ATGCAT 1 cut(s) 402
MseI TTAA 1 cut(s) 545
MslI CAYNNNNRTG 2 cut(s) 192, 420
MspA1I CMGCKG 3 cut(s) 152, 348, 372
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 5 cut(s) 77, 180, 270, 372, 497
NcoI CCATGG 1 cut(s) 75
NdeII GATC 3 cut(s) 20, 274, 319
NheI GCTAGC 1 cut(s) 554
NlaIII CATG 6 cut(s) 79, 400, 419, 425, 436, 448
NlaIV GGNNCC 1 cut(s) 352
NsiI ATGCAT 1 cut(s) 402
OliI CACNNNNGTG 1 cut(s) 192
PfeI GAWTC 2 cut(s) 146, 197
PkrI GCNGC 6 cut(s) 82, 176, 272, 350, 374, 502
PleI GAGTC 2 cut(s) 137, 218
PpsI GAGTC 2 cut(s) 137, 218
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 2 cut(s) 89, 168
PspPPI RGGWCCY 1 cut(s) 89
PstNI CAGNNNCTG 1 cut(s) 165
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 2 cut(s) 192, 420
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 6 cut(s) 81, 175, 271, 349, 373, 501
Sau3AI GATC 3 cut(s) 20, 274, 319
Sau96I GGNCC 2 cut(s) 89, 168
SchI GAGTC 2 cut(s) 138, 218
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 1 cut(s) 61
SetI ASST 5 cut(s) 91, 108, 240, 318, 560
SfaNI GCATC 3 cut(s) 488, 494, 500
SinI GGWCC 1 cut(s) 89
SmiMI CAYNNNNRTG 2 cut(s) 192, 420
Sse9I AATT 1 cut(s) 460
SsiI CCGC 8 cut(s) 80, 83, 152, 181, 348, 372, 483, 489
SspMI CTAG 2 cut(s) 93, 555
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 2 cut(s) 75, 92
TaqI TCGA 1 cut(s) 312
TasI AATT 1 cut(s) 460
TauI GCSGC 3 cut(s) 83, 351, 375
TfiI GAWTC 2 cut(s) 146, 197
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TscAI CASTG 3 cut(s) 170, 266, 368
TseI GCWGC 3 cut(s) 174, 270, 500
TspDTI ATGAA 2 cut(s) 331, 556
TspRI CASTG 3 cut(s) 170, 266, 368
VpaK11BI GGWCC 1 cut(s) 89
XmaJI CCTAGG 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 2 cut(s) 93, 555
Zsp2I ATGCAT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.