Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016703

Physical Location & Seq

Genomic Coordinates Forward (+)

4413202 .. 4420621

Gene Structure 7420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G061700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAAGAGGAACATATCTCATTGTTTCTTTGGTCTTTTCAAAACTTTGCTGACGGTTTTCTTGGCTGTCACAATTTGTTTTGCTGAAGCTGCTGCTACAGAGTTCCAAGCGGGTGATGATTTGGGATGGCAAGAACCTGACTTAAACAACAGCGCTCTGTATACTCAGTGGGCTTCCAGGAACAGATTTCATGTTGGAGATTCTCTCTCTTTCACGTACAAGAATGATTCAGTTCTTGAGGTTGACAAATGGGATTATTACCACTGCAACACAAGCAATCCCATAATCGCGTTTGATAACGGGAAAAGCATTATGAAACTTGATAGGCCTGGCCCCTTCTATTTTATCAGTGGAGCTCCTGATCACTGCAAGAATGGCCAGCGGATTTTTATCGAAGTGATGGATCCACGCCCGATCTCACAGTCTCCTCCACCCGGTGCAGTCCCACCTGAACCGTATTTGTCTGACTCTCCTGCACCCTCACCAAGCTTAGGAGTTGCCATTGCAGTTGCACCTTGTGCACTTTTTATGGCTCTTATTGTGACATTTTTAGCTTCAGTATGTTCCTCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

192

Amino Acids

20.97

Weight (kDa)

5.23

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79800
fragaria_vesca	FvH4_6g32140
malus_domestica	MD09G1206100.v1.1
prunus_persica	Prupe.3G061700_v2.0.a1 Prupe.3G062100_v2.0.a1
pyrus_communis	pycom09g12290
rosa_laevigata	RLG00000019843
rosa_roxburghii	Rroxscaffold_2G00105130
rosa_rugosa	Rorug02G0360500
rosa_samantha	Rh2AG411200 Rh2BG421400 Rh2CG397300 Rh2DG430900
rosa_wichuraiana	Rw2G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	161
AccII	CGCG	1 cut(s)	290
AciI	CCGC	2 cut(s)	110, 382
AclWI	GGATC	2 cut(s)	398, 411
AcoI	YGGCCR	1 cut(s)	376
AcuI	CTGAAG	2 cut(s)	105, 540
AdeI	CACNNNGTG	2 cut(s)	437, 518
AfaI	GTAC	1 cut(s)	218
AfeI	AGCGCT	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	434, 491
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	176, 328
AluBI	AGCT	4 cut(s)	89, 356, 489, 554
AluI	AGCT	4 cut(s)	89, 356, 489, 554
Alw21I	GWGCWC	2 cut(s)	358, 523
Alw26I	GTCTC	1 cut(s)	429
Alw44I	GTGCAC	1 cut(s)	519
AlwI	GGATC	2 cut(s)	398, 411
Aor51HI	AGCGCT	1 cut(s)	154
AoxI	GGCC	3 cut(s)	326, 331, 376
ApaLI	GTGCAC	1 cut(s)	519
ApeKI	GCWGC	2 cut(s)	89, 92
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	3 cut(s)	125, 474, 561
BaeGI	GKGCMC	1 cut(s)	523
BalI	TGGCCA	1 cut(s)	378
BamHI	GGATCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	358
Bbv12I	GWGCWC	2 cut(s)	358, 523
BbvI	GCAGC	2 cut(s)	76, 79
BccI	CCATC	2 cut(s)	120, 394
BciT130I	CCWGG	2 cut(s)	178, 330
BclI	TGATCA	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	2 cut(s)	90, 93
BlsI	GCNGC	2 cut(s)	91, 94
Bme1390I	CCNGG	3 cut(s)	178, 330, 435
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	2 cut(s)	334, 405
BmrFI	CCNGG	3 cut(s)	178, 330, 435
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
Bpu10I	CCTNAGC	1 cut(s)	490
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	435
BsaAI	YACGTR	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 491
Bse3DI	GCAATG	1 cut(s)	501
Bse8I	GATNNNNATC	1 cut(s)	389
BseBI	CCWGG	2 cut(s)	178, 330
BseGI	GGATG	1 cut(s)	131
BseJI	GATNNNNATC	1 cut(s)	389
BseLI	CCNNNNNNNGG	2 cut(s)	434, 491
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	523
BseXI	GCAGC	2 cut(s)	76, 79
BsgI	GTGCAG	2 cut(s)	459, 459
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	3 cut(s)	328, 333, 378
BsiHKAI	GWGCWC	2 cut(s)	358, 523
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	434, 491
BsmAI	GTCTC	1 cut(s)	429
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	3 cut(s)	328, 333, 378
Bsp1286I	GDGCHC	2 cut(s)	358, 523
Bsp143I	GATC	3 cut(s)	361, 403, 414
BspACI	CCGC	2 cut(s)	110, 382
BspANI	GGCC	3 cut(s)	328, 333, 378
BspCNI	CTCAG	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	334, 405
BspPI	GGATC	2 cut(s)	398, 411
BsrDI	GCAATG	1 cut(s)	501
BssMI	GATC	3 cut(s)	361, 403, 414
BssNAI	GTATAC	1 cut(s)	162
Bst1107I	GTATAC	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	178, 330
Bst4CI	ACNGT	3 cut(s)	55, 423, 456
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstBAI	YACGTR	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	2 cut(s)	165, 490
BstF5I	GGATG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	290
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	3 cut(s)	364, 406, 417
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	3 cut(s)	361, 403, 414
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 273, 375, 518
BstNI	CCWGG	2 cut(s)	178, 330
BstSCI	CCNGG	3 cut(s)	176, 328, 433
BstSFI	CTRYAG	1 cut(s)	96
BstSLI	GKGCMC	1 cut(s)	523
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	76, 79
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BstZ17I	GTATAC	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	328, 333, 378
BtsCI	GGATG	1 cut(s)	131
BtsI	GCAGTG	2 cut(s)	262, 364
BtsIMutI	CAGTG	4 cut(s)	173, 262, 355, 364
Cac8I	GCNNGC	1 cut(s)	380
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	1 cut(s)	191
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	165, 490
DpnI	GATC	3 cut(s)	363, 405, 416
DpnII	GATC	3 cut(s)	361, 403, 414
DraIII	CACNNNGTG	2 cut(s)	437, 518
EaeI	YGGCCR	1 cut(s)	376
Ecl136II	GAGCTC	1 cut(s)	356
Eco147I	AGGCCT	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	358
Eco47III	AGCGCT	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	356
Eco57I	CTGAAG	2 cut(s)	105, 540
EcoICRI	GAGCTC	1 cut(s)	356
EcoRII	CCWGG	2 cut(s)	176, 328
EcoT38I	GRGCYC	1 cut(s)	358
FaeI	CATG	1 cut(s)	194
FaiI	YATR	8 cut(s)	14, 162, 192, 284, 314, 530, 562, 574
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	1 cut(s)	190
FauI	CCCGC	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	2 cut(s)	90, 93
FokI	GGATG	1 cut(s)	138
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	2 cut(s)	90, 93
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	2 cut(s)	90, 93
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	3 cut(s)	328, 333, 378
HapII	CCGG	1 cut(s)	435
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	194
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	3 cut(s)	200, 227, 467
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	3 cut(s)	125, 474, 561
Hpy166II	GTNNAC	3 cut(s)	162, 244, 521
Hpy188I	TCNGA	1 cut(s)	466
Hpy188III	TCNNGA	2 cut(s)	236, 359
Hpy8I	GTNNAC	3 cut(s)	162, 244, 521
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	3 cut(s)	55, 423, 456
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	7 cut(s)	267, 369, 440, 476, 506, 512, 521
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 273, 375, 518
HpyF3I	CTNAG	2 cut(s)	165, 490
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	194
HspAI	GCGC	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	361, 403, 414
LmnI	GCTCC	2 cut(s)	353, 361
Lsp1109I	GCAGC	2 cut(s)	76, 79
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	67, 541
MalI	GATC	3 cut(s)	363, 405, 416
MboI	GATC	3 cut(s)	361, 403, 414
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	358, 523
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	1 cut(s)	72
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	3 cut(s)	232, 438, 490
Mox20I	TGGCCA	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	3 cut(s)	178, 330, 435
MvaI	CCWGG	2 cut(s)	178, 330
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	4 cut(s)	89, 273, 375, 518
NciI	CCSGG	1 cut(s)	435
NdeII	GATC	3 cut(s)	361, 403, 414
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	2 cut(s)	334, 405
NmuCI	GTSAC	2 cut(s)	67, 541
PceI	AGGCCT	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	200, 227
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	2 cut(s)	91, 94
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
Ppu21I	YACGTR	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	358
Psp6I	CCWGG	2 cut(s)	176, 328
PspGI	CCWGG	2 cut(s)	176, 328
PspN4I	GGNNCC	2 cut(s)	334, 405
PspPI	GGNCC	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SacI	GAGCTC	1 cut(s)	358
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	2 cut(s)	90, 93
Sau3AI	GATC	3 cut(s)	361, 403, 414
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	3 cut(s)	178, 330, 435
SduI	GDGCHC	2 cut(s)	358, 523
SetI	ASST	9 cut(s)	91, 139, 218, 243, 358, 451, 491, 517, 556
SfcI	CTRYAG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	72
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	2 cut(s)	110, 382
SstI	GAGCTC	1 cut(s)	358
StuI	AGGCCT	1 cut(s)	328
StyD4I	CCNGG	3 cut(s)	176, 328, 433
TaaI	ACNGT	3 cut(s)	55, 423, 456
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	1 cut(s)	393
TasI	AATT	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	200, 227
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	4 cut(s)	173, 269, 355, 371
TseFI	GTSAC	2 cut(s)	67, 541
TseI	GCWGC	2 cut(s)	89, 92
Tsp45I	GTSAC	2 cut(s)	67, 541
TspDTI	ATGAA	3 cut(s)	17, 179, 329
TspRI	CASTG	4 cut(s)	173, 269, 355, 371
VneI	GTGCAC	1 cut(s)	519
XmiI	GTMKAC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.